BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62320.1
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951000 jgi|Araly1|951000|scaffold_802887.1 1147 0.0
> Ahg951000 jgi|Araly1|951000|scaffold_802887.1
Length=779
Score = 1147 bits (621), Expect = 0.0
Identities = 730/782 (93%), Gaps = 9/782 (1%)
Strand=Plus/Plus
Query 124 tttttAAACCATATAATATAAATAATGGGTGGTCGTAAACCATGTTGTGATGAGGTTGGA 183
|||||||||| || |||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1 TTTTTAAACC--AT-ATATAAATTATGGGTGGTCGTAAACCATGTTGTGACGAAGTTGGA 57
Query 184 TTAAGAAAGGGTCCATGGACAGTGGAAGAAGATGGGAAACTAGTTGATTTCTTAAGGGCA 243
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 58 GTAAGAAAGGGACCGTGGACAGTGGAAGAAGATGGGAAACTAGTTGATTTCTTAAGGACA 117
Query 244 CGTGGCAACTGCGGTGGTGGTGGAGGAGGATGGTGCTGGAGAGACGTGCCAAAACTGGCG 303
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 118 CGTGGCAACTGCGGCGGTGGCGGAGGAGGATGGTGCTGGAGAGACGTGCCGAAACTGGCG 177
Query 304 GGGCTAAGGAGGTGTGGCAAAAGTTGCCGTCTCCGGTGGACTAATTATCTCCGGCCAGAT 363
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 GGGCTAAGGCGGTGTGGCAAAAGTTGCCGTCTCCGATGGACTAATTATCTCCGGCCAGAT 237
Query 364 CTCAAGAGAGGTCTTTTTACTGAAGAAGAAATCCAACTAGTCATTGATCTTCATGCTCGC 423
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 238 CTCAAGAGAGGTCTTTTTAGTGAAGAGGAAATCCAACTAGTCATTGATCTTCATGCTCGC 297
Query 424 CTTGGCAATAGATGGTCGAAGATTGCAGTGGAGTTACCAGGAAGAACAGACAACGATATC 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 CTTGGCAATAGATGGTCGAAGATTGCAGTGGAGTTACCGGGAAGAACAGACAACGATATC 357
Query 484 AAAAATTATTGGAACACTCATATAAAGAGGAAGCTTATAAGAATGGGTATTGATCCAAAC 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AAAAATTATTGGAACACTCATATAAAGAGGAAGCTTATAAGAATGGGTATTGATCCAAAC 417
Query 544 ACACATCGTCGATTTGACCAACAAAAAGTCAACGAGGAGGAAACGATATTGGTCAACGAT 603
||||||||||| |||||||||| |||||||||||| || ||| | ||||||||||||||
Sbjct 418 ACACATCGTCGGTTTGACCAACTAAAAGTCAACGAAGATAAAAAGGTATTGGTCAACGAT 477
Query 604 CCAAAGCCTCTGTCTGAGACC-GAGGTATCTGTTG-CTTTGAAGAATGACACGTCAGCAG 661
| |||||||||| ||||| || |||||| | || | ||| ||||||||||||||| || |
Sbjct 478 CTAAAGCCTCTGCCTGAG-CCAGAGGTACCGGTAGTCTT-GAAGAATGACACGTCGGCGG 535
Query 662 TGTTATCAGGAAATCTAAACCAATTGGCTGACGTGGACGGTGATGATCAGCCGTGGAGCT 721
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 536 TGTTATCAGGAAATCTAAACCAGTTAGCTGACGTAGACGGTGATGATCAGCCGTGGAGCT 595
Query 722 TTCTAATGGAAAATGACGAAGGAGG-AGGTGGCGACGCCGCCGGAGAGCTTACGATGCTA 780
|| ||||||||||||||| || ||| |||||| | ||||||||||||||||| |||||||
Sbjct 596 TTTTAATGGAAAATGACGGAG-AGGGAGGTGGTGGCGCCGCCGGAGAGCTTATGATGCTA 654
Query 781 TTGTCCGGTGACATTACGTCATCATGTTCTTCTTCGTCATCTTTGTGGATGAAGTATGGA 840
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 655 TTGTCCGGCGACATTACGTCATCATGTTCTTCTTCGTCATCTTTGTGGTTGAAGTATGGA 714
Query 841 GAATTCGGATACGAAGATTTAGAACTTGGATGTTTCGATGTTTAGAGATTCAAGTATGTT 900
|| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 715 GATTTGGGATACGAAGATTTAGAACTTGGATGTTTCGATGATTAGAGATTCAAGTATGCT 774
Query 901 TA 902
||
Sbjct 775 TA 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39228481593
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5