BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62340.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951005 jgi|Araly1|951005|scaffold_802892.1 850 0.0
Ahg951004 jgi|Araly1|951004|scaffold_802891.1 754 0.0
> Ahg951005 jgi|Araly1|951005|scaffold_802892.1
Length=664
Score = 850 bits (460), Expect = 0.0
Identities = 590/653 (90%), Gaps = 8/653 (1%)
Strand=Plus/Plus
Query 81 AGCAATGGCAAAACAATACCAAGCTCTCTTTCTACTCTTCTCCGTCTTCTACCTCTTCTC 140
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 17 AGCAATGGCAAAACAATACCAAGCTCTCTTTCTACTCCTCTCCGTCTCCTACCTCTTCTC 76
Query 141 GTCGGTGCTCACGACCGCCACAGTCAACCCGGCCGGAACTACCACAAAAGCACTAAACTT 200
|| | |||||||||||||||| ||| |||| | |||||| |||||||||||||||||||
Sbjct 77 CTCAGAGCTCACGACCGCCACAATCAGCCCGACTGGAACTTCCACAAAAGCACTAAACTT 136
Query 201 TATTCAATCCTCATGCAAATCCACAACATACCAATCCCTGTGCGTTGAAACTCTCTCGGT 260
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 137 CATTCAATCCTCATGCAAATCCACAACGTACCAATCCCTATGCGTTGAAACTCTCTCGGT 196
Query 261 TTACGCCAATACGATCAAAACAAGCCCTCGACACCTCTTGGATGCAGCTATCACCGTGAG 320
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 197 CTACGCCAATACGATCAAAACAAGCCCTCGACGCCTCTTGGATGCAGCTATTGCCGTGAG 256
Query 321 TCTGAACCAAGCGCTGTCCACGAAGCTCTTCATCTCACACCTGAGGAAGAG-CCAGTTCC 379
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 257 TCTGAACCAAGCGCTGTCCACGAAGCTCTTCATCTCACACCTGAGGAAGAGTCC-GTTCC 315
Query 380 AAATCCTTCAGGACTGCGCACCATCGACCGATACGTTCAGTACAGATTGCGAGTGTTCTG 439
||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 316 AAACCCTTCAGGACTGTGCACCATCGACCGATACGTTCAATACAGATTGCCAGTGTTCTA 375
Query 440 TCCAAGCA-CTCCAAGAGGTGGTGAATTGTAACAGTTGGACCGACTGCTTGTTTCACGTA 498
|| ||| | ||||||||||||| |||||||||| |||||||||| ||||||| | | ||
Sbjct 376 TCGAAG-AGCTCCAAGAGGTGGAGAATTGTAACGGTTGGACCGAATGCTTGTCTAAAATA 434
Query 499 AAGAATGCTGAAGTGTGTGCCATTTCGGGTGAGAGTCATAGCGTCGAGAACACTTGCTCC 558
|| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 435 AACAATGCTGAAGTGTGTGCCATTGCGGGTGAGAGTCATAGCGTTGAGAACACTTGCTCC 494
Query 559 AGCCCGTTCGCGGATCCGGGAAAGATATCAGC-CAGGGGCCGGATCTCGGATGCCGTAAG 617
||||||||||||| ||||| |||||| |||| ||||| | ||||||||||||| |||||
Sbjct 495 AGCCCGTTCGCGGGTCCGGTAAAGATGTCAGTTCAGGGTC-GGATCTCGGATGCGGTAAG 553
Query 618 AAAATCACTTCATACCCGGTTCTCTAAGTTGCGCCAGGAAATAAACAATGCCAAAATGTT 677
||| ||||| || ||||| ||| ||||||||| ||| ||||||||||||||||| ||||
Sbjct 554 AAAGTCACTCCAGACCCGATTCGCTAAGTTGCACCAAGAAATAAACAATGCCAAGCTGTT 613
Query 678 GTTCGAGGCCTTTCCTAATAAGCATTAGTAATAATATATTTCTTTTGTTGTAT 730
|||| | |||||||| ||||| ||| |||||||| | || ||||||||||||
Sbjct 614 GTTCAAAGCCTTTCCGAATAATCATAAGTAATAAGAC-TT-CTTTTGTTGTAT 664
> Ahg951004 jgi|Araly1|951004|scaffold_802891.1
Length=665
Score = 754 bits (408), Expect = 0.0
Identities = 592/678 (87%), Gaps = 23/678 (3%)
Strand=Plus/Plus
Query 59 TTCTCTCAACCTCAAGAAAAACAGCAATGGCAAAACAATACCAAGCTCTCTTTCTACTCT 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTCTCAACCTCAAGAAAAACAGCAATGGCAAAACAATACCAAGCTCTCTTTCTACTCC 60
Query 119 TCTCCGTCTTCT-ACCTCTTCTCGTCGGTGCTCACGACCGCCACAGTCAACCCGGCCGGA 177
||||||||| || ||||| ||| |||| |||||||||||| |||||| |||| |||||
Sbjct 61 TCTCCGTCT-CTTACCTCCTCTTTTCGGAGCTCACGACCGCTTCAGTCAGCCCGACCGGA 119
Query 178 ACTACCACAAAAGCACTAAACTTTATTCAATCCTCATGCAAATCCACAACATACCAATCC 237
||| | || |||||||||||||| ||||||||||| ||||||| |||||| |||||||||
Sbjct 120 ACTTCTACGAAAGCACTAAACTTCATTCAATCCTCTTGCAAATTCACAACGTACCAATCC 179
Query 238 CTGTGCGTTGAAACTCTCTCGGTTTACGCCAATACGATCAAAACAAGCCCTCGACACCTC 297
||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||| |||
Sbjct 180 CTGTGCGTTGAGACTCTCTCGGTCTACGCCAGTACGATCCAAACAAGCCCTCGACGTCTC 239
Query 298 TTGGATGCAGCTATCACCGTGAGTCTGAACCAAGCGCTGTCCACGAAGCTCTTCATCTCA 357
||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||||
Sbjct 240 GTGGATGCAGCTATTGCCGTTAGTCTGAACCAAGCGCTGTCTACGAAGCTCTTCCTCTCA 299
Query 358 CACCTGAGGAAGAGCCAGTTCCAAATCCTT-CAGGACTGCGCA-CCATCGACCGA-TACG 414
||||||| ||||| |||||||| || |||| | ||||||| || ||| | ||||| | ||
Sbjct 300 CACCTGACGAAGAACCAGTTCCGAACCCTTGC-GGACTGC-CAACCAACAACCGAAT-CG 356
Query 415 TTCAGTACAGATTGCGAGTGTTCTGTCCAAGCA-CTCCAAGAGGTGGTGAATTGTAACAG 473
| || ||||||||||||||||||||||||| || |||||||||||||||| |||||| ||
Sbjct 357 TACACTACAGATTGCGAGTGTTCTGTCCAA-CAACTCCAAGAGGTGGTGATTTGTAAAAG 415
Query 474 TTGGACCGACTGCTTGTTTCACGTAAAGAATGCTGAAGTGTGTGCCATTTCGGGTGAG-A 532
||||||||| |||||||||||||| || ||||||||||| ||||||||||||| |||| |
Sbjct 416 TTGGACCGAATGCTTGTTTCACGTTAACAATGCTGAAGTCTGTGCCATTTCGGCTGAGGA 475
Query 533 GTCATAGCGTCGAGAACACTTGCTCCAGCCCGTTCGCGGATCCGGGAAAGATATCAG-CC 591
|| ||||||||||||| ||||||||| ||| ||| ||| ||||| |||||| |||| ||
Sbjct 476 GT-ATAGCGTCGAGAATTCTTGCTCCAACCCATTCACGGGTCCGGTAAAGATGTCAGTCC 534
Query 592 AGGGGCCGGATCTCGGATGCCG-TAAGAAAATCACTTCATACCCGGTTCT-CTAAGTTGC 649
||||||| ||||||||||| | ||||||| ||||| ||||||| ||| | |||||||||
Sbjct 535 -GGGGCCGAATCTCGGATGC-GATAAGAAAGTCACTCCATACCCAGTT-TACTAAGTTGC 591
Query 650 GCCAGGAAATAAACAATGCCAAAATGTTGTTCGAGGCCTTTCCTAATAAGCATTAGTAAT 709
||| ||||||||||||| ||||||||||||| | ||||||||||| || |||| |||
Sbjct 592 ACCATGAAATAAACAATGTCAAAATGTTGTTCAAAGCCTTTCCTAAGAA---TTAGAAAT 648
Query 710 AATAT-ATTTCTTTTGTT 726
||| | | ||||||||||
Sbjct 649 AAT-TGACTTCTTTTGTT 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5