BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62350.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496412 jgi|Araly1|496412|fgenesh2_kg.8__2228__AT5G62350.1 1212 0.0
> Ahg496412 jgi|Araly1|496412|fgenesh2_kg.8__2228__AT5G62350.1
Length=826
Score = 1212 bits (656), Expect = 0.0
Identities = 775/831 (93%), Gaps = 14/831 (2%)
Strand=Plus/Plus
Query 66 aaaaaaaTCACCAATGGCAAAACAATATCTCTTTGTACTCCTCTCAATCTCCTATCTCTT 125
|||||||||||||||||||||||||||| ||||| || |||||||| ||||||| |||||
Sbjct 1 AAAAAAATCACCAATGGCAAAACAATATTTCTTTCTAATCCTCTCACTCTCCTACCTCTT 60
Query 126 ATCACTGGAGCTCACGGCGGCCACCGCAGCCTCACAGACCGGAGCTTCCAAAAAAGCCAT 185
|||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 61 CTCACCGGAGCTCACGGCGGCCACCGCAGCCTCACAGGCCGGAGCTTCCAAGAAAGCCAT 120
Query 186 AAACTTCATCCAATCTTCTTGCAAAACCACCACATACCCTGCCTTATGTGTCCACTCACT 245
|||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 121 CAACTTCATCCAATCTTCTTGCAAAGCCACCACATACCCAGCCTTATGCGTCCACTCACT 180
Query 246 CTCCGTCTACGCAAACGACATCCAAACAAGCCCTAAACGTTTAGCTGAGACCGCTATAGC 305
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CTCCATCTACGCAAATGACATCCAAACAAGCCCTAAACGTTTAGCTGAGACCGCTCTAGC 240
Query 306 CGTGACACTAAGCCGAGCCCAATCCACGAAGCTCTTCGTCTCGCGTCTAACACGTATGAA 365
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CGTGACACTAAACCGAGCCCAATCCACGAAGCTCTTTGTCTCGCGTCTAACACGTATGAA 300
Query 366 GGGTCTTAAGAAGCGCGAGGTCGAAGCCATCAAAGATTGCGTCGAGGAGATGAACGATAC 425
||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 301 GGGCCTTAAGAAGCGTGAGGTCGAAGCCGTCAAAGATTGCGTCGAGGAGATCAACGATAC 360
Query 426 CGTTGACCGTTTGACCAAATCTGTTCAAGAACTGAAGTTGTGTGGGAGTGCCAAAGATCA 485
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 361 CGTTGACCGTTTGACCAAATCTGTTCAAGAACTGAAGTTATGTGGTAGTGCCAAAGATCA 420
Query 486 AGACCAGTTTGCGTACCACATGAGTAATGCTCAGACTTGGACTAGTGCGGCTTTGACTGA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 AGACCAGTTTGCGTACCACATGAGTAATGCTCAGACTTGGACTAGTGCGGCTTTGACCGA 480
Query 546 CGAGAACACTTGCTCCGATGGGTTCTCGGGTCGGGTTATGGATGGGAGGATCAAGAACTC 605
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGAGAACACTTGCTCCGATGGATTCTCGGGTCGGGTTATGGATGGGAGGATCAAGAACTC 540
Query 606 GGTTCGGGCTAGAATCATGAACGTGGGACATGAAACCAGCAACGCTTTGTCCTTGATTAA 665
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 541 GGTTCGGGCTAGAATCATGAACGTGGGCCACGAAACTAGCAACGCTTTGTCCTTGATTAA 600
Query 666 TGCCTTTGCTAAAACTTACTAATTTAAAACTATATTTTGTCCTGTAAAATATATATATAG 725
||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |
Sbjct 601 TGCCTTTGCTAAAACTTACTAATTTTAAACTATATTTTGTCCTGTAAAATAGATCTA--G 658
Query 726 ATAAATGTAATGTCTTGCTAAGAGTTTGATGTGATATAtttttttcgattttggtagttt 785
|||||||||||||||||||||||||||| ||||||||| |||| || ||||| ||||||
Sbjct 659 ATAAATGTAATGTCTTGCTAAGAGTTTGGTGTGATATACTTTT--CGTTTTTGTTAGTTT 716
Query 786 ctttttgttttGTAACGTGGTTTATAA-TAGTATAATGTGTATTTTGAGCTATAAAGTTG 844
|||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 717 CTTTTTGTTTTGTAT-GTGGTTTATAAATAGTATTATGTGTATTTTGAGCTATAAAGTTG 775
Query 845 TTTTTAAGA-------TT-GGATAAATTGCCCCCAACAAATGGTAGCTAGT 887
||||||||| || ||||| ||| |||| ||||||| |||||||||
Sbjct 776 TTTTTAAGAAAACAGATTTGGATATATTTCCCCAAACAAATTGTAGCTAGT 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5