BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62380.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332471 jgi|Araly1|332471|fgenesh1_pm.C_scaffold_8001814 1709 0.0
> Ahg332471 jgi|Araly1|332471|fgenesh1_pm.C_scaffold_8001814
Length=1050
Score = 1709 bits (925), Expect = 0.0
Identities = 1009/1050 (96%), Gaps = 3/1050 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAGTCTCGCACACATTCCTCCCGGTTATCGATTCCATCCGACCGATGAAGAACTC 60
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGTCTCGTACACATTCCTCCCGGTTATCGATTCCATCCGACCGATGAAGAACTC 60
Query 61 GTTGACTATTATCTCAAGAACAAAGTTGCATTCCCGGGAATGCAAGTTGATGTTATCAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTTGACTATTATCTCAAGAACAAAGTTGCATTCCCGGGAATGCAAGTTGACGTTATCAAA 120
Query 121 GATGTTGATCTCTACAAAATCGAGCCATGGGACATCCAAGAGTTATGTGGAAGAGGGACA 180
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GATGTTGATCTCTACAAAATTGAGCCATGGGACATTCAAGAGTTATGTGGAAGAGGGACA 180
Query 181 GGAGAAGAGAGGGAATGGTATTTCTTTAGCCACAAGGACAAGAAATATCCAACTGGGACA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GGAGAAGAGAGGGAATGGTATTTCTTTAGCCACAAGGACAAGAAATACCCAACTGGGACA 240
Query 241 CGAACCAATAGAGCAACGGGCTCCGGATTTTGGAAAGCAACGGGTCGAGACAAGGCCATT 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAACCAATAGAGCAACTGGCTCCGGATTTTGGAAAGCAACGGGTCGAGACAAGGCCATA 300
Query 301 TACTCAAAGCAAGAGCTTGTTGGGATGAGGAAGACTCTTGTCTTTTACAAAGGTAGGGCC 360
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 301 TACTCGAAGCAAGAGCTTGTTGGTATGAGGAAGACTCTTGTGTTTTACAAAGGTAGGGCC 360
Query 361 CCAAATGGTCAGAAATCTGATTGGATAATGCACGAATACCGTCTTGAGACCGATGAAAAT 420
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CCGAATGGTCAGAAATCCGATTGGATAATGCACGAATACCGTCTCGAGACCGATGAAAAT 420
Query 421 GGACCGCCTCATGAGGAAGGATGGGTGGTTTGTCGCGCTTTCAAGAAGAAGCTAACCACG 480
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 421 GGACCACCTCATGAGGAAGGATGGGTGGTTTGCCGCGCTTTCAAGAAGAAACTAACCACA 480
Query 481 ATGAACTACAACAATCCAAGAACAATGATGGGATCATCATCAGGCCAAGAATCTAACTGG 540
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 481 ATGAATTACAACAATCCAAGAACAATGATTGGATCATCATCTGGCCAAGAATCTAATTGG 540
Query 541 TTCACGCAGCAAATGGATGTGGGGAATGGTAATTACTATCATCTTCCTGATCTAGAGAGT 600
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCGCGCAGCAAATGGATGTGTCTAATGGTAATTACTATCATCTTCCTGATCTAGAGAGT 600
Query 601 CCGAGAATGTTTCAAGGCtcatcatcatcatcactatcatcattacatcaGAATGATCAA 660
|| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 601 CCAAGAATGTTTCAAGGCTCATCATCATCATCAATATCATCATTACACCAGAATGATCAA 660
Query 661 GACCCTTATGGTGTCGTACTCAGCACTATTAACGC-AA--CCCCAACTACAATAATGCAA 717
|||||||||||||||||||| |||||||||||||| || | |||| ||||||||||||
Sbjct 661 GACCCTTATGGTGTCGTACTAAGCACTATTAACGCAAATTCTGCAACCACAATAATGCAA 720
Query 718 CGAgatgatggtcatgtgattaccaatgatgatgatcatatgatcatgatgaACACAAGT 777
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 CGAGATGATGGTCATGTGATTACCAATGATGATGATCACATGATCATGATGAACACAAGT 780
Query 778 ACTGGTGATCATCATCAATCAGGATTACTAGTCAATGATGATCATAATGATCAAGTAATG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACTGGTGATCATCATCAATCAGGATTACTAGTCAATGATGATCATAATGATCAAGTAATG 840
Query 838 GATTGGCAAACGCTTGACAAGTTTGTTGCTTCTCAGCTAATCATGAGCCAAGAAGAGGAA 897
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 GATTGGCAAACGCTTGATAAGTTTGTTGCTTCGCAGCTAATCATGAGCCAAGAAGAGGAA 900
Query 898 GAAGTTAACAAAGATCCATCAGATAATTCTTCGAATGAAACATTTCATCATCTCTCTGAA 957
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 GAAGTTAACAAAGATCCATCAGATAATTCTTCGAATGAAACATTTCATCAACTCTCTGAA 960
Query 958 GAGCAAGCTGCAACAATGGTTTCGATGAATGCTTCTTCCTCTTCTTCTCCATGTTCCTTC 1017
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 GAGCAAGCTGCAACAATGGTTTCGATGAATGCCTCTTCCTCTTCTTCTCCATGTTCCTTC 1020
Query 1018 TACTCTTGGGCTCAAAATACACACACGTAA 1047
||||||||||||||||||||||||||||||
Sbjct 1021 TACTCTTGGGCTCAAAATACACACACGTAA 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5