BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62390.1
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951011 jgi|Araly1|951011|scaffold_802898.1 2132 0.0
> Ahg951011 jgi|Araly1|951011|scaffold_802898.1
Length=1384
Score = 2132 bits (1154), Expect = 0.0
Identities = 1316/1392 (95%), Gaps = 19/1392 (1%)
Strand=Plus/Plus
Query 100 AAACACTCT-AAAACAAAACCATGACTTTGTTCCATAGACTCGATCTCATCGATCCGTAC 158
||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1 AAACACT-TAAAAACAAAACCATGAGTTGGTTCCATAGACTCGATCTCATCGATCCGTAC 59
Query 159 ACGTGTACACCACTCATCGTCCGTGAAACCTCCATTGTTGAACCTTCATCATTGTTCCTA 218
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 60 ACGTGTTCACCACTCATCGTCCGTGAAACCTCCATTGTTGAACCTTCTTCATTGTTCTTA 119
Query 219 GGGTTTCCTTCCTTCATCGACGAAGACATTGAAGATCTCTTCGAGTTTTCATCACCTAAT 278
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
Sbjct 120 GGGTTTCCTTCCTTCATCGACGAAGATGTTGAAGATCTCTTCGACTTTTCATCACCTAGT 179
Query 279 CCTCTCGATCTATTCGAAACCGTGACGGATCTGGTTAAGATTAAGAAATCTCCGTCGTCT 338
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 180 CCTCTCGATCTATTCGAAACCGTGACGGATCTGGTTCAGATTGAGAAATCTCCGTCGTCT 239
Query 339 TGCAAGTACAAGGTGATTCGTCGGAGATTAGAGCCGGAGTATCCATTGAAGTATCTTTGT 398
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 TGCAAGTACAAGGTGATTCGTCGGAGATTGGAGCCGGAGTATCCATTGAAGTATCTTTGT 299
Query 399 GACCGTGTTTCTGATTTGGAATCAAAGTTTGATAGATTGGTTAGTCCTAAGAGTGATAGG 458
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GACCGTGTTTCTGATTTGGAATCCAAGTTTGATAGATTGGTTAGTCCTAAGAGTGATAGG 359
Query 459 AAGTATACATTGACGAAGGAGATAAAGGGAAGTGGTGAGAGGAAGTATAAATGGGAGGCG 518
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 360 AAGTATACATTGACGAAGGAGATTAAGGGAAGTGGTGAGAGGAAGTATAAATGGGAAGCG 419
Query 519 GAGATTCAAGGACCGTTGGAGAGGAAGTATAAGTTGGAAGCTGAGATTGAAGGTTCGGGA 578
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGATTCAGGGACCGCCGGAGAGGAAGTATAAGTTGGAAGCTGAGATTGAAGGTTCGGGA 479
Query 579 GAGAGGAAGTATAGATGGACGACGGAGATTAAAGGAGGGAAGAAGGATGAGGAAGGGTTA 638
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAGAGCAAGTATAAATGGACGACGGAGATTAAAGGAGGGAAGAAGGATGAGGAAGGGTTA 539
Query 639 AAGTTAGCTGCTTTGAAGAAGGAGAAGGCGAAAGCTAAAGCTATTGCTGCTGCTGAAGCG 698
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 540 AAGTTAGCTGCTTTGAAGAAGGAGAAGGC----G--AAAGCTATTGCTGCTGCTGAAGCG 593
Query 699 Gagaagaagaagaataagaataagaagaagagttataattggacgacggaggtgaagagt 758
||||||||||| || || || |||||||||||||| ||||||||||||||||||||||||
Sbjct 594 GAGAAGAAGAATAAGAATAAGAAGAAGAAGAGTTACAATTGGACGACGGAGGTGAAGAGT 653
Query 759 gagagagagaaTGGTGAGGTTTCGCATACTTATATCATCAAGGCTACTACTggaggagag 818
|||||||||||||| ||| ||||||| |||||||||||||||||| |||||||||| |||
Sbjct 654 GAGAGAGAGAATGGAGAGATTTCGCACACTTATATCATCAAGGCTTCTACTGGAGGGGAG 713
Query 819 aaaaagaagaaacatgaggagaaggagaagaa--ag-ag--a-ag-a--tagagactaag 869
|||||||||||||||||||||||||||||||| || || | || | |||||||||||
Sbjct 714 AAAAAGAAGAAACATGAGGAGAAGGAGAAGAAGGAGAAGAAAGAGAAGGTAGAGACTAAG 773
Query 870 agcaagaagaaggagaaAACTCGTGTTGTGGTGATTGAGGAGGAGGAAGAAGAAGATGAT 929
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 774 AGCAAGAAGAAGGAGAAAACTCGTGTTGTGGTGATCGAGGAGGAGGAAGAAGAAGATGAT 833
Query 930 GAGTCGTCAGAACATGGTGCTATCGTTCTTAGGAAGGCGTTTTCCAGAAGGAA-TGGAGC 988
|||||| |||||||||| ||||| ||||| ||||||||||||||||||| ||| ||||||
Sbjct 834 GAGTCGGCAGAACATGGAGCTATTGTTCTCAGGAAGGCGTTTTCCAGAA-GAACTGGAGC 892
Query 989 AGTTAGGACCAAGAAGGGGAAGAACAAGGAAATGCCACCTGAATATGCGGCTGTGATGAT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGTTAGGACCAAGAAGGGGAAGAACAAGGAAATGCCACCTGAATATGCGGCTGTGATGAT 952
Query 1049 CCAGAGGGCCTTCAAAGCTTATTTGATTCGTCGCTCAAAATCATTGCGTGCTCTTCGTGA 1108
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 953 CCAGAGGGCCTTCAAAGCTTATTTGATTCGCCGTTCAAAATCATTGCGTGCTCTTCGTGA 1012
Query 1109 TCTTGCTATTGCAAAGACTAAACTTAAGGAGCTAAGAGCTTCTTTCCACAACTTCAGCTA 1168
||| |||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1013 TCTAGCTATTGCGAAGACTAAACTGAAGGAGCTTAGAGCTTCGTTCCACAACTTCAGCTA 1072
Query 1169 CCGTCGCCTGATTGCTCGTGATGGAGAGGAGCGTCAGAAATTCTCAGAGAAGATCATTGT 1228
||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 1073 CCGTCGCCTGATTGCTCGTGACGCAGAGGAGCGCCAGAAATTCTCAGAGAAGATCATTGT 1132
Query 1229 ACTCCTCCTCACTGTTGACGCCATAGAGGGAGTTGATGTGATGGTTCGAGGAGCGAAGAG 1288
||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1133 ACTTCTCCTCACAGTTGATGCCATAGAGGGAGTTGATGTAATGGTTCGAGGAGCGAAAAG 1192
Query 1289 ATCAATGGTGGATGAGCTGGAAGCAATGTTAGATGTGGTAGACCCGCAACCGCAGGGGAA 1348
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1193 ATCAATGGTGGATGAGCTGGAAGCAATGTTGGATGTGGTAGACCCGCAACCACAGGGGAA 1252
Query 1349 ATCATTGTCGATGAGAAGAAGAACATTTGATATGCCAGACAGTTTGATCCGCAAAGAAAT 1408
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1253 ATCATTGTCGATGAGAAGAAGAACATTCGATATGCCAGACAGTTTGATCCGCAAAGAAAT 1312
Query 1409 CGCAGAGGGAGTGACTCAGATTGTGCAGATGCTTGAAACGGAAGAAGAATGATGGAATGG 1468
|||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 1313 CGCAGACGGAGTGACTCAGATCGTGCAGATGCTTGAAACAGAAGAAGAATAATGGAATGG 1372
Query 1469 AGCACTGTGTGT 1480
||||||||||||
Sbjct 1373 AGCACTGTGTGT 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69819419085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5