BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62400.1 Length=645 Score E Sequences producing significant alignments: (Bits) Value Ahg917996 jgi|Araly1|917996|Al_scaffold_0008_2747 717 0.0 > Ahg917996 jgi|Araly1|917996|Al_scaffold_0008_2747 Length=564 Score = 717 bits (388), Expect = 0.0 Identities = 512/569 (90%), Gaps = 19/569 (3%) Strand=Plus/Plus Query 1 ATGAAGACGACGAAGGCGAAAGCAAACACAATCTTGGGGAAGAAACTCGAAGAACTTGAG 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1 ATGAAGACGACGAAGGCGAAAGCAAACACAATCTTGGAGAAGAAACTCGAAGAACTCGAG 60 Query 61 TATTACCTACAAGAATTCGGTTCTGGCAATGGTGATCTTAACGCATACCGGGAATTCGGA 120 | || ||||||||||| ||||||||||||| ||||||||| ||||||||||||||| | Sbjct 61 TGTTTGCTACAAGAATTTGGTTCTGGCAATGTTGATCTTAATGCATACCGGGAATTC-AA 119 Query 121 AC-CCGGTTTGTTTTCACGCAAACCCTTTTATGTGCGGAGATATCGTCGGTTAAGGACGA 179 || ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 120 ACTCCGCTTTGTTTTCACGCATACCCTTTTATGTGCGGAGATATCGTCGGTTAAGGACGA 179 Query 180 TGAAGACGAAGAAGAGATGTTGAAACTTCGTTTCATGGCTAAGAGGTTAACCGAACTTGA 239 |||||||||||| || || | |||||||||| ||||||||||||||||||||||||||| Sbjct 180 TGAAGACGAAGA-GA--TGCTCAAACTTCGTTGCATGGCTAAGAGGTTAACCGAACTTGA 236 Query 240 AGAGGCTTTCAAGGAAAAGACCGGTCCAATCAACCAACTGGACTTGCAGAGTTTGGAAAG 299 |||||||||||||||| |||| || |||||||||||| |||| |||||||||||||||| Sbjct 237 AGAGGCTTTCAAGGAATTGACCAGTTCAATCAACCAACCGGACATGCAGAGTTTGGAAAG 296 Query 300 TGGTGGTGGTGT----A--G---ATGAGACCACTTTGGTTCGCTCGTTGGTTGAATCGTT 350 |||||||||||| | | |||||||| |||||||||||| |||||||||||||| Sbjct 297 TGGTGGTGGTGTTGTCAATGTTGATGAGACCGGTTTGGTTCGCTCATTGGTTGAATCGTT 356 Query 351 ACATGCAGAATATCAAGATGCGAATTCATTagaagagaagttggcgatgagaagaaccga 410 ||| | |||||||||||||||| | | ||||| ||||||| ||||| ||||| |||||| Sbjct 357 ACACGAAGAATATCAAGATGCG--T-CGTTAGAGGAGAAGTGGGCGAGGAGAAAAACCGA 413 Query 411 gaagatgaagaagaagCGGTTTAGGGGTTTGGTTAGTTTTGGTATAGTTGGTTTTGTTAC 470 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 414 GAAGATGAAGACGAAGCGGTTCAGGGGTTTGGTTAGTTTTGGTATAGTTGGTTTTGTTGC 473 Query 471 -GAGTATGGCCCCACGTGCCATCTTTTACCCGGTTGTAATCCCACCGAAAGATTCTCTTG 529 | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 474 TG-GTATGGCCCCACGTGCCATCTTTTACCAGGTTGTAATCCCACCGAAAGATTCTCTTG 532 Query 530 TCGACGTAATACCTCACACGCTTCAAGGT 558 || |||||||| | |||||||||||||| Sbjct 533 TCAACGTAATATTTTACACGCTTCAAGGT 561 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23636208540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5