BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G62400.1

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg917996 jgi|Araly1|917996|Al_scaffold_0008_2747                    717    0.0  


> Ahg917996 jgi|Araly1|917996|Al_scaffold_0008_2747
Length=564

 Score =  717 bits (388),  Expect = 0.0
 Identities = 512/569 (90%), Gaps = 19/569 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGACGACGAAGGCGAAAGCAAACACAATCTTGGGGAAGAAACTCGAAGAACTTGAG  60
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct  1    ATGAAGACGACGAAGGCGAAAGCAAACACAATCTTGGAGAAGAAACTCGAAGAACTCGAG  60

Query  61   TATTACCTACAAGAATTCGGTTCTGGCAATGGTGATCTTAACGCATACCGGGAATTCGGA  120
            | ||  ||||||||||| ||||||||||||| ||||||||| |||||||||||||||  |
Sbjct  61   TGTTTGCTACAAGAATTTGGTTCTGGCAATGTTGATCTTAATGCATACCGGGAATTC-AA  119

Query  121  AC-CCGGTTTGTTTTCACGCAAACCCTTTTATGTGCGGAGATATCGTCGGTTAAGGACGA  179
            || ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  120  ACTCCGCTTTGTTTTCACGCATACCCTTTTATGTGCGGAGATATCGTCGGTTAAGGACGA  179

Query  180  TGAAGACGAAGAAGAGATGTTGAAACTTCGTTTCATGGCTAAGAGGTTAACCGAACTTGA  239
            |||||||||||| ||  || | |||||||||| |||||||||||||||||||||||||||
Sbjct  180  TGAAGACGAAGA-GA--TGCTCAAACTTCGTTGCATGGCTAAGAGGTTAACCGAACTTGA  236

Query  240  AGAGGCTTTCAAGGAAAAGACCGGTCCAATCAACCAACTGGACTTGCAGAGTTTGGAAAG  299
            ||||||||||||||||  |||| || |||||||||||| |||| ||||||||||||||||
Sbjct  237  AGAGGCTTTCAAGGAATTGACCAGTTCAATCAACCAACCGGACATGCAGAGTTTGGAAAG  296

Query  300  TGGTGGTGGTGT----A--G---ATGAGACCACTTTGGTTCGCTCGTTGGTTGAATCGTT  350
            ||||||||||||    |  |   ||||||||  |||||||||||| ||||||||||||||
Sbjct  297  TGGTGGTGGTGTTGTCAATGTTGATGAGACCGGTTTGGTTCGCTCATTGGTTGAATCGTT  356

Query  351  ACATGCAGAATATCAAGATGCGAATTCATTagaagagaagttggcgatgagaagaaccga  410
            ||| | ||||||||||||||||  | | ||||| ||||||| ||||| ||||| ||||||
Sbjct  357  ACACGAAGAATATCAAGATGCG--T-CGTTAGAGGAGAAGTGGGCGAGGAGAAAAACCGA  413

Query  411  gaagatgaagaagaagCGGTTTAGGGGTTTGGTTAGTTTTGGTATAGTTGGTTTTGTTAC  470
            ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct  414  GAAGATGAAGACGAAGCGGTTCAGGGGTTTGGTTAGTTTTGGTATAGTTGGTTTTGTTGC  473

Query  471  -GAGTATGGCCCCACGTGCCATCTTTTACCCGGTTGTAATCCCACCGAAAGATTCTCTTG  529
             | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  474  TG-GTATGGCCCCACGTGCCATCTTTTACCAGGTTGTAATCCCACCGAAAGATTCTCTTG  532

Query  530  TCGACGTAATACCTCACACGCTTCAAGGT  558
            || ||||||||  | ||||||||||||||
Sbjct  533  TCAACGTAATATTTTACACGCTTCAAGGT  561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23636208540


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5