BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62410.1
Length=3763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496418 jgi|Araly1|496418|fgenesh2_kg.8__2234__AT5G62410.1 5877 0.0
Ahg951014 jgi|Araly1|951014|scaffold_802901.1 243 1e-62
Ahg924122 jgi|Araly1|924122|scaffold_105403.1 193 1e-47
Ahg337680 jgi|Araly1|337680|fgenesh1_pg.C_scaffold_1004245 189 1e-46
Ahg358442 jgi|Araly1|358442|fgenesh1_pg.C_scaffold_8002229 69.4 2e-10
> Ahg496418 jgi|Araly1|496418|fgenesh2_kg.8__2234__AT5G62410.1
Length=3665
Score = 5877 bits (3182), Expect = 0.0
Identities = 3508/3663 (96%), Gaps = 32/3663 (1%)
Strand=Plus/Plus
Query 33 GAAGAAGAAGGAAGATGCATATAAAGGAGATATGCTTGGAGGGTTTTAAATCATACGCGA 92
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1 GAAGAAGAAGGAAGATGCATATAAAAGAGATATGCTTGGAGGGTTTCAAATCATACGCGA 60
Query 93 CGAGGACGGTGGTTTCTGGTTTCGATCCACATTTCAACGCGATAACGGGTCTGAATGGTT 152
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 CGAGGACTGTGGTTTCTGGTTTCGATCCACATTTCAACGCAATAACGGGTCTGAATGGTT 120
Query 153 CGGGAAAATCCAACATCCTCGATTCCATCTGTTTCGTTCTGGGTATCACCAATCTTCAGC 212
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CGGGCAAATCCAACATCCTCGATTCCATCTGTTTCGTTCTGGGTATCACTAATCTTCAGC 180
Query 213 AAGTTCGAGCTGCTAATCTTCAGGAACTCGTCTATAAGCAAGGCCAAGCTGGGATTACTA 272
| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 181 AGGTTCGAGCTGCGAATCTTCAGGAGCTCGTCTACAAGCAAGGCCAAGCTGGGATTACCA 240
Query 273 AGGCGACTGTCTCGGTTACCTTTGACAATTCCGAGAGACACAGAAGCCCTCTCGGCTACG 332
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 AAGCGACTGTGTCGGTTACCTTTGACAATTCCGAGAGACACAGGAGCCCTCTCGGCTACG 300
Query 333 AAGAACATCCAGAGATTACTGTGACTAGACAAATTGTAGTTGGTGGAAGGAACAAGTATT 392
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AAGAACATCCGGAGATTACTGTGACTAGACAAATTGTAGTTGGTGGTCGGAACAAGTATT 360
Query 393 TGATAAATGGGAAGCTAGCACAACCAAGTCAAGTTCAGAATCTATTT-CACTCGGTGCAG 451
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 361 TGATAAATGGGAAGCTAGCACAACCAAGTCAAGTTCAGAATCT-TTTCCACTCGGTGCAG 419
Query 452 CTTAATGTCAACAATCCACACTTTCTCATCATGCAAGGGCGTATCACCAAAGTTTTGAAT 511
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 420 CTTAATGTCAACAATCCACACTTTCTCATCATGCAAGGGCGTATCACCAAAGTCTTAAAT 479
Query 512 ATGAAGCCTCCGGAGATATTGTCCATGCTTGAAGAAGCTGCTGGAACAAGGATGTATGAA 571
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 ATGAAACCTCCGGAGATATTGTCCATGCTTGAAGAAGCTGCTGGAACAAGAATGTATGAA 539
Query 572 AACAAGAAA-GAGGCTGCATTGAAAACGCTTGaaaaaaaGCAGACCAAGGTTGATGAGAT 630
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AACAA-AAAGGAAGCTGCATTGAAAACGCTTGAAAAAAAGCAGACCAAGGTTGATGAGAT 598
Query 631 TAATAAGCTTCTTGATCATGAAATATTGCCGGCTCTCGAGAAGTTGAGGAAAGAAAAATC 690
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 TAATAAGCTCCTTGATCATGAAATATTGCCGGCGCTCGAGAAGTTGAGGAAAGAAAAATC 658
Query 691 ACAGTACATGCAGTGGGCTAATGGTAACGCGGAGCTAGATCGACTAAGGAGATTCTGTAT 750
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 659 ACAATACATGCAGTGGGCTAATGGTAACGCGGAACTCGATCGACTAAGGAGATTCTGTAT 718
Query 751 TGCCTTTGAATATGTTCAAGCGGAGAAGATTAGAGACAATGCTGTTCTTGGAGTTGGAGA 810
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 719 TGCCTTTGAATATGTTCAAGCAGAGAAGATTAGAGACAGTGCTGTTCTTGGAGTTGGAGA 778
Query 811 AATGAAGGCGAAGCTCGGGAAGATTGACGCGGAAACAGAAAAGACACAGGAAGAAATACA 870
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct 779 AATGAAGGCGAAGCTCACTAAGATTGACGAGGAAACAGAAAAGACACAGGGAGAAATACA 838
Query 871 GGAATTTGAGAAACAGATAAAAGCTCTGACTCAGGCAAAGGAAGCCAGTATGGGGGGAGA 930
|||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 GGAAATTGAGAAACATATAAAAGCTCTGACTCGGGCAAAGGAAGCCAGTATGGGGGGAGA 898
Query 931 AGTAAAAACTCTGTCAGAAAAAGTGGATTCACTGGCTCAAGAAATGACACGTGAGTCATC 990
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 AGTAAAAACTCTGTCAGAAAAAGTGGATTCACTAGCTCAAGAAATGACACGTGAGTCATC 958
Query 991 TAAACTTAATAACAAGGAGGACACCCTTCTGGGAGAAAAAGAGAATGTTGAAAAGATTGT 1050
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 959 TAAACTTAATAACAAGGAGGACACCCTTCTGGGAGAAAAAGAGAATGCTGAAAAGATTGT 1018
Query 1051 TCACAGTATAGAAGATTTAAAGAAATCCGTAAAGGAGAGAGCCGCTGCTGTGAAGAAGTC 1110
||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1019 TCACAATATAGAAGATTTAAAGAAATCCGTAAAAGAGAGGGCCGCTGCTGTGAAGAAGTC 1078
Query 1111 TGAGGAAGGAGCGGCAGACCTAAAACAAAGATTCCAGGAACTCTCCACCACATTGGAAGA 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGAGGAAGGAGCGGCAGACCTAAAACAAAGATTCCAGGAACTCTCCACCACATTGGAAGA 1138
Query 1171 GTGTGAAAAGGAACACCAGGGCGTACTAGCTGGTAAGAGTAGTGGAGATGAAGAGAAATG 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GTGTGAAAAGGAACACCAGGGCGTACTAGCTGGTAAGAGTAGTGGAGATGAAGAGAAATG 1198
Query 1231 CTTAGAAGATCAACTACGGGATGCAAAGATTGCTGTTGGAACAGCTGGAACAGAGTTGAA 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTTAGAAGATCAACTACGGGATGCAAAGATTGCTGTTGGAACAGCTGGAACAGAGTTGAA 1258
Query 1291 ACAGCTAAAAACCAAAATAGAACACTGTGAAAAGGAGCTAAAGGAGAGAAAGTCTCAGTT 1350
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1259 ACAGCTGAAAACCAAAATAGAACACTGTGAAAAGGAGCTAAATGATAGAAAGTCTCAGTT 1318
Query 1351 AATGTCAAAACTTGAAGAAGCCATTGAAGTGGAGAATGAACTTGGAGCTAGGAAAAATGA 1410
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1319 AATGTCAAAACGTGAAGAAGCCATTGAAGTGGAGAATGAACTTAGAGCTAGGAAAAATGA 1378
Query 1411 TGTGGAACATGTAAAAAAGGCACTTGAATCTATTCCTTATAACGAGGGTCAAATGGAAGC 1470
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1379 TGTGGAACGTGTAAAAAAGGCACTTGAATCTATTCCTTATAATGAGGGTCAAATGGAAGC 1438
Query 1471 TTTGGAGAAGGACCGTGGAGCCGAACTTGAAGTTGTGCAGAGGCTGGAAGATAAAGTGCG 1530
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1439 TTTGGAGAAGGACCGCGGAGCTGAACTTGAAGTTGTGCAAAGGCTGGAAGATAAAGTGCG 1498
Query 1531 TGGCTTATCAGCTCAATTAGCAAATTTTCAGTTTACATACAGCGATCCTGTGAGGAACTT 1590
||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1499 TGGTTTATCAGCTCAATTAGCAAATGTTCAGTTTACATACCGCGATCCTGTGAGGAACTT 1558
Query 1591 TGACCGATCTAAGGTGAAAGGTGTGGTCGCAAAACTAATAAAAGTAAAAGATAGGTCCTC 1650
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1559 TGACCGATCTAAGGTGAAAGGTGTGGTCGCAAAACTGATAAAAGTAAAAGATAGGTCCTC 1618
Query 1651 AATGACAGCGTTGGAGGTTACTGCTGGTGGCAAGTTGTATGATGTTGTTGTAGACTCAGA 1710
||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1619 AATGACAGCCTTGGAGGTTACTGCTGGTGGGAAGTTGTATAATGTTGTTGTAGACTCAGA 1678
Query 1711 AGATACTGGAAAACAGCTCCTTCAAAACGGTGCTCTTAGGAGAAGAGTTACAATTATACC 1770
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1679 AGATACTGGAAAACAGCTCCTTCAAAACGGTGCTCTTAGGAGAAGAGTTACAATCATACC 1738
Query 1771 TCTGAACAAAATCCAATCTTACGTTGTTCAGCCTAGAGTGCAGCAAGCGACTGCTAGATT 1830
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1739 TCTGAACAAAATCCAATCTTATGTTGTTCAGCCTAGAGTGCAGCAAGTGACTGCTAGATT 1798
Query 1831 GGTTGGAAAGGATAATGCAGAACTGGCACTTTCCTTAGTCGGTTATAGTGATGAATTAAA 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 GGTTGGAAAGGATAATGCAGAACTGGCACTTTCCTTAGTCGGTTATAGTGATGAATTAAA 1858
Query 1891 GAATGCCATGGAATATGTTTTTGGCTCCACTTTTGTTTGCAAAACTACTGATGTAGCAAA 1950
||||||||| || ||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 1859 GAATGCCATTGAGTATGTTTTTGGTTCCACTTTTGTTTGCAAAACTACTGATGCGGCTAA 1918
Query 1951 GGAAGTTGCTTTTAATCGGGATATTCGGACTCCAAGTGTCACACTTGAAGGTGACATTTT 2010
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1919 GGAAGTAGCATTTAATCGGGATATTCGGACTCCAAGTGTCACACTTGAAGGTGATATTTT 1978
Query 2011 CCAGCCAAGTGGTCTTCTTACTGGTGGGAGTCGCAAGGGTGGAGGTGATCGCCTTAGGAA 2070
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
Sbjct 1979 CCAGCCAAGTGGTCTTCTTACTGGTGGGAGTCGCAAAGGTGGAGGTGATCTCCTTAGGCA 2038
Query 2071 ACTTCATGACCTGGCAGAAGCTGAATCAGAATTACAAGGACACCAAAAAAGGTTGGCTGA 2130
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2039 ACTTCATGACCTGGCAGAAGCTGAATCAAAATTACAAGGACACCAAAAAAGGTTGGATGA 2098
Query 2131 CGTTGAATCACAGATCAAAGAGCTTCAGCCTCTTCAAATGAAATTCACAGATGTTTATGC 2190
| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 2099 CATTGAAGCACAGATCAAAGAGCTTCAGCCTCTTCAAAAGAAATTCACAGATGTTAATGC 2158
Query 2191 ACAGTTGGAGCTGAAGACGTATGACTTGTCCTTATTTTTGAAGAGGGCTGAACAAAATGA 2250
|||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2159 ACAGTTGGAGCTAAAAACGTACGACTTGTCCTTATTTTTGAAGAGGGCTGAACAGAATGA 2218
Query 2251 GCATCACAAGCTTGGCGAAGCTGTaaaaaaaCTTGAAGAAGAGCTTGAAGAAGCGAAATC 2310
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 2219 GCATCACAAGCTTGGCGAAGCAGTAAAAAAACTTGAAGAAGAGCTTGAAGCAGCGAAATT 2278
Query 2311 CCAAATCAAAGAGAAGGAACTTGCTTATAAAAATTGTTTTGATGCTGTTTCCAAACTAGA 2370
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2279 CCAAATCAAAGAGAAGGAACTTGCTTATAAAAATTGTGTTGATGCTGTTTCCAAACTAGA 2338
Query 2371 GAATTCCATCAAAGACCATGACAAAAACAGAGAAGGAAGACTTAAGGACTTGGaaaaaaa 2430
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2339 GAATTCCATCAAAGACCATGACAAAAACAGAGAAGGAAGACTCAAGGACTTGGAAAAAAA 2398
Query 2431 TATTAAAACCATCAAAGCTCAAATGCAGGCAGCTTCCAAAGATTTAAAGAGTCATGAAAA 2490
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 TATTAAGACCATCAAAGCTCAAATGCAGGCAGCTTCCAAAGATTTAAAGAGTCATGAAAA 2458
Query 2491 TGAAAAAGAGAAGCTTGTGATGGAGGAAGAAGCAATGAAGCAAGAACAATCGTCCTTGGA 2550
||||||||||||||||||||||||| |||| |||||| | ||||||| |||||||||||
Sbjct 2459 TGAAAAAGAGAAGCTTGTGATGGAGAAAGACGCAATGGGGAAAGAACAGTCGTCCTTGGA 2518
Query 2551 GAGCCACTTAACTTCATTGGAAACCCAAATCAGCACTCTGACTTCGGAAGTAGACGAGCA 2610
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2519 GAGCCACTTAGCTTCATTGGAAACCCAAATTAGCACTCTGACTTCGGAAGTAGACGAGCA 2578
Query 2611 GCGAGCCAAGGTTGATGCCTTACAGAAGATTCATGATGAGTCTCTTGCCGAGCTCAAGTT 2670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2579 GCGAGCCAAGGTTGATGCCTTACAGAAGATTCATGATGAGTCTCTTGCCGAGCTCAAGTT 2638
Query 2671 GATACATGCAAAGATGAAGGAATGTGATACACAGATAAGTGGTTTTGTCACTGACCAGGA 2730
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2639 GATACATGCAAAGATGAAGGAATGTGATACACAGATAAGTGGTTTTGTCACTGCCCAGGA 2698
Query 2731 AAAGTGTCTGCAGAAGCTTAGTGACATGAAGCTTGAGAGAAAGAAATTGGAAAATGAGGT 2790
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2699 AAAGTGTCTGCAGAAGCTTAGTGACATGAAACTTGAGAGAAAGAAATTGGAAAATGAGGT 2758
Query 2791 CGTAAGGATGGAAACGGATCACAAGGACTGTTCCGTGAAAGTAGACAAACTTGTTGAGAA 2850
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2759 CGTAAGGATGGAGACGGATCACAAGGATTGTTCCGTGAAGGTAGACAAACTTGTTGAGAA 2818
Query 2851 GCATACATGGATAGCATCTGAAAAGCAACTTTTTGGGAAAGGAGGGACAGATTATGATTT 2910
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2819 GCATACATGGATAGCATCTGAAAAGCAACTTTTTGGAAAAGGAGGGACAGATTATGATTT 2878
Query 2911 TGAATCTTGTGATCCGTATGTGGCCAGAGAAAAACTTGAAAAGCTCCAATCAGATCAATC 2970
||||| ||||||||||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct 2879 TGAATTTTGTGATCCGTATGTAGCCAGACAAAAACTTGAAAAGCTCCAGTCAGATCAATC 2938
Query 2971 AGGCTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGA 3030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2939 AGGCTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGA 2998
Query 3031 ATACAATGCTCTGATATCGaaaaaaaaTACTATCGAGAATGACAAATCAAAAATCACGAA 3090
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2999 ATACAATGCTCTGATATCGAAGAAAAATACTATCGAGAATGACAAATCAAAAATCACAAA 3058
Query 3091 AGTGATCGAGGAGCTTGATGAGAAGAAAAAAGAAACCCTGAAAGTTACTTGGGTTAAAGT 3150
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 3059 AGTGATTGAGGAGCTTGATGAGAAGAAAAAAGAAACCCTGAAAGTCACGTGGGTTAAAGT 3118
Query 3151 TAACCAGGATTTCGGATCAATCTTTTCAACTCTACTACCTGGCACCATGGCAAAACTAGA 3210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3119 TAACCAGGATTTCGGATCAATCTTTTCAACTCTACTACCTGGCACCATGGCAAAACTAGA 3178
Query 3211 ACCTCCTGAAGACGGTAACTTCCTTGATGGTCTTGAGGTGCGTGTTGCCTTTGGAAAAGT 3270
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3179 ACCTCCTGAAGGCGGTAGCTTCCTTGATGGTCTTGAGGTGCGTGTTGCCTTTGGAAAAGT 3238
Query 3271 CTGGAAGCAGTCTTTATCAGAACTCAGTGGAGGGCAAAGATCTCTTCTTGCGCTATCACT 3330
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3239 CTGGAAGCAGTCTTTATCAGAACTCAGTGGAGGGCAAAGATCACTTCTTGCGCTATCACT 3298
Query 3331 AATATTGGCATTGCTTCTCTTCAAACCGGCTCCTCTTTATATATTAGATGAGGTTGATGC 3390
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3299 AATATTGGCATTGCTTCTCTTCAAACCGGCTCCTCTTTATATATTAGACGAGGTTGATGC 3358
Query 3391 AGCTCTTGATCTCAGTCACACACAGAACATAGGAAGAATGATAAGAGCTCATTTCCCTCA 3450
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3359 AGCTCTTGATCTCAGTCACACACAGAACATAGGAAGAATGATAAAAGCTCATTTCCCTCA 3418
Query 3451 CTCGCAGTTTATCGTGGTTTCGCTGAAAGAAGGAATGTTCAACAATGCCAATGTTCTTTT 3510
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3419 CTCGCAGTTTATCGTGGTTTCGCTGAAAGAAGGAATGTTCAACAACGCCAATGTTCTTTT 3478
Query 3511 CCGGACAAAGTTCGTTGATGGAGTTTCAACAGTCCAAAGGACAGTAACAAAGCAGACCAA 3570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 CCGGACAAAGTTCGTTGATGGAGTTTCAACAGTCCAAAGGACAGTAACAAAGCAGACCAA 3538
Query 3571 GTGATA-TGCTTATACGTCATTAGATCAATCCAATCAGTATTCAGATTTTGCAATTCCAT 3629
|||||| | | | | | || | || | ||| || ||||| ||||
Sbjct 3539 GTGATAAT-C--A--C-T-AT--G--CA---------G-ATT----TT--GCAATCCCAT 3571
Query 3630 TTGGCCGTTTCCGTCTAACATTTTCTTTGTATTGAAAATCAAGATCTTTGTGTAGAATAT 3689
|||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 3572 TTGGCCGTTTCCTTCTAGCATTCTCTTTGTATTGAAAATCAAGATCTTTGTGTAGAATAT 3631
Query 3690 GAC 3692
|||
Sbjct 3632 GAC 3634
> Ahg951014 jgi|Araly1|951014|scaffold_802901.1
Length=674
Score = 243 bits (131), Expect = 1e-62
Identities = 152/162 (94%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 2628 CCTTACAGAAGATTCATGATGAGTCTCTTGCCGAGCTCAAGTTGATACATGCAAAGATGA 2687
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 47 CCTTACAGAAGATTCATGATGAATCTCTTGCCGAGCTCAAGTTGATACATGCAAGGATGA 106
Query 2688 AGGAATGTGATACACA-GATAAGTGGTTTTGTCACTGACCAGGAAAAGTGTCTGCAGAAG 2746
|||||| |||||||| | ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 107 GGGAATGCGATACACATG-TAAGTGGTTTTGTCACTGAGCAGGAAAAATGTCTGCAGAAG 165
Query 2747 CTTAGTGACATGAAGCTTGAGAGAAAGAAATTGGAAAATGAG 2788
|||||| ||||||||||||| |||||||||||||||||||||
Sbjct 166 CTTAGTTACATGAAGCTTGAAAGAAAGAAATTGGAAAATGAG 207
Score = 172 bits (93), Expect = 1e-41
Identities = 100/103 (97%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 2974 CTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATA 3033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATA 350
Query 3034 CAATGCTCTGATATCGaaaaaaaaTACTATCGAGAATGACAAA 3076
|||||||||||||||||| ||||||||||||||||| || |||
Sbjct 351 CAATGCTCTGATATCGAAGAAAAATACTATCGAGAAAGA-AAA 392
Score = 108 bits (58), Expect = 4e-22
Identities = 84/95 (88%), Gaps = 8/95 (8%)
Strand=Plus/Plus
Query 2978 GAAA-AAAGAGTGAACAAG-AAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATACA 3035
|||| ||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 384 GAAAGAAA-AGTTAACAAGAAAGGTTATTGCTATGTTTGAGAAAGCAGAAGATGAATACA 442
Query 3036 ATGCTCTGATATCGaaa-aaaaaT-AC-TATCGAG 3067
|||||||| |||| ||| |||||| || || ||||
Sbjct 443 ATGCTCTGGTATC-AAAGAAAAATTACCTA-CGAG 475
> Ahg924122 jgi|Araly1|924122|scaffold_105403.1
Length=485
Score = 193 bits (104), Expect = 1e-47
Identities = 185/221 (84%), Gaps = 18/221 (8%)
Strand=Plus/Plus
Query 366 TTGTAGTTGGTGGAAGGAACAAGTATTTGATAAATGGGAAGCTAGCACAACCAAGTCAAG 425
||||| || |||| || |||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 140 TTGTAATTAGTGGTAGTAACAAGCATTTGATAAATGGGAAGCTTGCACAACCTAGTCAAG 199
Query 426 TTCAGAATCTATTT-CACTCGGTGCAGC-T--TAATGTCAACAATCCACACTTTCTCATC 481
| |||||||| ||| ||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 200 TCCAGAATCT-TTTCCACTCTGTGCAGCTTAATAATGTCAACAATCCACACTTTCTCATC 258
Query 482 ATGCAAGGGCGTATCACCAAAGTTTTGAATATGAAGCCTCCGGAGATATTGTCCATGCTT 541
|||||||| | ||||||||||| || || ||||| ||||| |||||| | || |
Sbjct 259 ATGCAAGGTAGAATCACCAAAGTCTTAAACATGAAACCTCCCGAGATA----C--TG-T- 310
Query 542 GAAGAAGCTGCTGGAACAAGGATGTATGAAAACAAGAAAGA 582
| | | |||||||||||| ||||||||||||||||||||
Sbjct 311 G--G--G-TGCTGGAACAAGAATGTATGAAAACAAGAAAGA 346
> Ahg337680 jgi|Araly1|337680|fgenesh1_pg.C_scaffold_1004245
Length=489
Score = 189 bits (102), Expect = 1e-46
Identities = 185/222 (83%), Gaps = 18/222 (8%)
Strand=Plus/Plus
Query 365 ATTGTAGTTGGTGGAAGGAACAAGTATTTGATAAATGGGAAGCTAGCACAACCAAGTCAA 424
|||| |||| |||| | |||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 22 ATTGCAGTTAGTGGTCGTAACAAGCATTTGATAAATGGGAAGCTTGCACAACCTAGTCAA 81
Query 425 GTTCAGAATCTATTT-CACTCGGTGCAGC-T--TAATGTCAACAATCCACACTTTCTCAT 480
|| |||||||| ||| ||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 82 GTCCAGAATCT-TTTCCACTCTGTGCAGCTTAATAATGTCAACAATCCACACTTTCTCAT 140
Query 481 CATGCAAGGGCGTATCACCAAAGTTTTGAATATGAAGCCTCCGGAGATATTGTCCATGCT 540
||||||||| | ||||||||||| || || ||||| ||||| |||||| | || |
Sbjct 141 CATGCAAGGTAGAATCACCAAAGTCTTAAACATGAAACCTCCCGAGATA----C--TG-T 193
Query 541 TGAAGAAGCTGCTGGAACAAGGATGTATGAAAACAAGAAAGA 582
| | | |||||||||||| ||||||||||||||||||||
Sbjct 194 -G--G--G-TGCTGGAACAAGAATGTATGAAAACAAGAAAGA 229
> Ahg358442 jgi|Araly1|358442|fgenesh1_pg.C_scaffold_8002229
Length=360
Score = 69.4 bits (37), Expect = 2e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 3514 GACAAAGTTCGTTGATGGAGTTTCAACAGTCCAAAGGACA 3553
||| ||||||||||||||||||||||||||||||||||||
Sbjct 315 GACTAAGTTCGTTGATGGAGTTTCAACAGTCCAAAGGACA 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142183092728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5