BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62420.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358443 jgi|Araly1|358443|fgenesh1_pg.C_scaffold_8002230 1544 0.0
> Ahg358443 jgi|Araly1|358443|fgenesh1_pg.C_scaffold_8002230
Length=951
Score = 1544 bits (836), Expect = 0.0
Identities = 912/950 (96%), Gaps = 0/950 (0%)
Strand=Plus/Plus
Query 1 ATGAGGAGTGACGTGGCACGTCTCAGGTGTGGGGAGACGATTCCATTGCTTGGAATGGGA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGAGGAGTGACGTGGCACGTCTCAGGTGTGGGAAGACGATTCCATTGCTTGGAATGGGA 60
Query 61 ACTTATTGTCCTCAAAAAGATCGAGAGAGCACCATATCAGCCGTCCATCAAGCTATTAAG 120
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||
Sbjct 61 ACTTATTGTCCTCAAAAAGATCGAGAGACCACCATCTCAGCCGTCCATCAAGCTATCAAG 120
Query 121 ATAGGGTACAGACATTTTGACACAGCAAAGATATATGGATCAGAAGAAGCTCTTGGAACT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAGGGTATAGACATTTTGACACAGCAAAGATATATGGATCAGAAGAAGCTCTTGGAACT 180
Query 181 GCATTGGGACAAGCTATCTCCTATGGGACTGTCCAAAGAGATGATCTTTTTGTCACTTCA 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 GCATTGGGACAAGCTATCTCCTATGGGACTGTCCAAAGAGATGATCTCTTTGTCACTTCC 240
Query 241 AAGTTATGGTCTAGTGATCACCATGACCCTATCTCTGCCCTCATACAAACTCTCAAGACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTTATGGTCTAGTGATCACCATGACCCTATCTCTGCCCTCATACAAACTCTCAAGACA 300
Query 301 ATGGGTCTAGACTATCTTGACAACTACTTGGTGCATTGGCCAATAAAGCTAAAGCCGGGA 360
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ATGGGCCTAGAGTATCTAGACAACTACTTGGTGCATTGGCCAATAAAGCTAAAGCCAGGA 360
Query 361 GTTAGTGAGCCTATACCAAAGGAAGATGAGTTTGAGAAAGATTTGGGAATTGAAGAAACT 420
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTGAATGAGCCTATACCAAAGGAAGATGAGTTTGAGAAAGATTTGGGGATTGAAGAAACT 420
Query 421 TGGCAAGGCATGGAGAGATGCTTGGAGATGGGTTTGTGCAGATCTATTGGTGTTAGCAAC 480
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 421 TGGCAAGGAATGGAGAGATGCTTGGAGATGGGTTTGTGTAAATCTATTGGTGTTAGCAAC 480
Query 481 TTCTCTTCTAAGAAGATCTTTGATCTCCTTGATTTCGCTTCTGTCTCTCCATCGGTGAAT 540
||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||
Sbjct 481 TTCTCTTCTAAGAAGATCTTTGATCTCCTCGATTTCGCTTCCGTCTCGCCGTCGGTTAAC 540
Query 541 CAGGTGGAAATGCATCCATTGTGGAGACAAAGAAAGCTAAGGAAAGTGTGTGAAGAGAAC 600
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 CAGGTGGAGATGCATCCATTGTGGAGACAAAGAAAGTTAAGGAAAGTGTGTGAAGAGAAC 600
Query 601 AATATCCATGTAAGTGGATACTCCCCACTTGGTGGGCCAGGGAATTGTTGGGGATCAACG 660
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATATCCATATAAGTGGATATTCCCCACTTGGTGGGCCAGGGAATTGTTGGGGATCAACG 660
Query 661 GCTGTGATTGAACATCCTATCATCAAATCCATTGCTCTCAAGCATAATGCCACTCCTGCT 720
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 661 GCTGTGATTGAACATCCTGTTATCAAATCCATTGCTCTCAAGCATAATGCAACTCCTGCT 720
Query 721 CAGGTGGCTCTAAGATGGGGAATGTCAAAAGGAGCAAGTGTGATCGTCAAGAGTTTTAAT 780
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 721 CAGGTGGCACTAAGATGGGGAATGTCAAAAGGAGCAAGTGTGATAGTGAAGAGTTTTAAT 780
Query 781 GGAGCAAGAATGATAGAGAACAAGAGAGCCTTAGAGATTAAATTGGATGATCAAGACTTG 840
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAGCAAGAATGAGAGAAAACAAGAGAGCCTTAGAGATTAAATTGGATGATCAAGACTTA 840
Query 841 TCACTCATTGACCATTTGGAGGAATGGAAGATCATGAGAGGAGACTTCCTTGTTAATCAA 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TCACTCATTGACCATTTGGAGGAATGGAAGATCATGAGAGGAGAGTTCCTTGTTAATCAA 900
Query 901 ACCACAAGCCCTTACAAATCCATCCAACAACTTTGGGATAATGAGATTTA 950
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 901 ACCACAAGCCCTTACAAATCCATCCAACAACTTTGGGATAATGAAATTTA 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5