BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62420.1 Length=951 Score E Sequences producing significant alignments: (Bits) Value Ahg358443 jgi|Araly1|358443|fgenesh1_pg.C_scaffold_8002230 1544 0.0 > Ahg358443 jgi|Araly1|358443|fgenesh1_pg.C_scaffold_8002230 Length=951 Score = 1544 bits (836), Expect = 0.0 Identities = 912/950 (96%), Gaps = 0/950 (0%) Strand=Plus/Plus Query 1 ATGAGGAGTGACGTGGCACGTCTCAGGTGTGGGGAGACGATTCCATTGCTTGGAATGGGA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 ATGAGGAGTGACGTGGCACGTCTCAGGTGTGGGAAGACGATTCCATTGCTTGGAATGGGA 60 Query 61 ACTTATTGTCCTCAAAAAGATCGAGAGAGCACCATATCAGCCGTCCATCAAGCTATTAAG 120 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| Sbjct 61 ACTTATTGTCCTCAAAAAGATCGAGAGACCACCATCTCAGCCGTCCATCAAGCTATCAAG 120 Query 121 ATAGGGTACAGACATTTTGACACAGCAAAGATATATGGATCAGAAGAAGCTCTTGGAACT 180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATAGGGTATAGACATTTTGACACAGCAAAGATATATGGATCAGAAGAAGCTCTTGGAACT 180 Query 181 GCATTGGGACAAGCTATCTCCTATGGGACTGTCCAAAGAGATGATCTTTTTGTCACTTCA 240 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 181 GCATTGGGACAAGCTATCTCCTATGGGACTGTCCAAAGAGATGATCTCTTTGTCACTTCC 240 Query 241 AAGTTATGGTCTAGTGATCACCATGACCCTATCTCTGCCCTCATACAAACTCTCAAGACA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAGTTATGGTCTAGTGATCACCATGACCCTATCTCTGCCCTCATACAAACTCTCAAGACA 300 Query 301 ATGGGTCTAGACTATCTTGACAACTACTTGGTGCATTGGCCAATAAAGCTAAAGCCGGGA 360 ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 301 ATGGGCCTAGAGTATCTAGACAACTACTTGGTGCATTGGCCAATAAAGCTAAAGCCAGGA 360 Query 361 GTTAGTGAGCCTATACCAAAGGAAGATGAGTTTGAGAAAGATTTGGGAATTGAAGAAACT 420 || | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 GTGAATGAGCCTATACCAAAGGAAGATGAGTTTGAGAAAGATTTGGGGATTGAAGAAACT 420 Query 421 TGGCAAGGCATGGAGAGATGCTTGGAGATGGGTTTGTGCAGATCTATTGGTGTTAGCAAC 480 |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 421 TGGCAAGGAATGGAGAGATGCTTGGAGATGGGTTTGTGTAAATCTATTGGTGTTAGCAAC 480 Query 481 TTCTCTTCTAAGAAGATCTTTGATCTCCTTGATTTCGCTTCTGTCTCTCCATCGGTGAAT 540 ||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| || Sbjct 481 TTCTCTTCTAAGAAGATCTTTGATCTCCTCGATTTCGCTTCCGTCTCGCCGTCGGTTAAC 540 Query 541 CAGGTGGAAATGCATCCATTGTGGAGACAAAGAAAGCTAAGGAAAGTGTGTGAAGAGAAC 600 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 541 CAGGTGGAGATGCATCCATTGTGGAGACAAAGAAAGTTAAGGAAAGTGTGTGAAGAGAAC 600 Query 601 AATATCCATGTAAGTGGATACTCCCCACTTGGTGGGCCAGGGAATTGTTGGGGATCAACG 660 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 601 AATATCCATATAAGTGGATATTCCCCACTTGGTGGGCCAGGGAATTGTTGGGGATCAACG 660 Query 661 GCTGTGATTGAACATCCTATCATCAAATCCATTGCTCTCAAGCATAATGCCACTCCTGCT 720 |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| Sbjct 661 GCTGTGATTGAACATCCTGTTATCAAATCCATTGCTCTCAAGCATAATGCAACTCCTGCT 720 Query 721 CAGGTGGCTCTAAGATGGGGAATGTCAAAAGGAGCAAGTGTGATCGTCAAGAGTTTTAAT 780 |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 721 CAGGTGGCACTAAGATGGGGAATGTCAAAAGGAGCAAGTGTGATAGTGAAGAGTTTTAAT 780 Query 781 GGAGCAAGAATGATAGAGAACAAGAGAGCCTTAGAGATTAAATTGGATGATCAAGACTTG 840 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GGAGCAAGAATGAGAGAAAACAAGAGAGCCTTAGAGATTAAATTGGATGATCAAGACTTA 840 Query 841 TCACTCATTGACCATTTGGAGGAATGGAAGATCATGAGAGGAGACTTCCTTGTTAATCAA 900 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 841 TCACTCATTGACCATTTGGAGGAATGGAAGATCATGAGAGGAGAGTTCCTTGTTAATCAA 900 Query 901 ACCACAAGCCCTTACAAATCCATCCAACAACTTTGGGATAATGAGATTTA 950 |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 901 ACCACAAGCCCTTACAAATCCATCCAACAACTTTGGGATAATGAAATTTA 950 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35301821142 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5