BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62440.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496421 jgi|Araly1|496421|fgenesh2_kg.8__2237__AT5G62440.1 1050 0.0
> Ahg496421 jgi|Araly1|496421|fgenesh2_kg.8__2237__AT5G62440.1
Length=748
Score = 1050 bits (568), Expect = 0.0
Identities = 654/695 (94%), Gaps = 7/695 (1%)
Strand=Plus/Plus
Query 49 aaGGCGGAAGCTTTACTAGCTTAACAATGGCTGAAG-AACAAGAGATCGTCGATTCCCTG 107
|||||| |||||| ||| | ||| ||||||| | || ||||||||||| |||||||| |
Sbjct 27 AAGGCGAAAGCTTGACTGGTTTATCAATGGC-GGAGCAACAAGAGATCCTCGATTCCGTT 85
Query 108 TCAGCGGAAGTGAACCCAGACCAGAAAGTGGACATGGAAGTCGAAACCGCGACCCCGAAA 167
||||| |||||||||||||||||||||| |||||||| |||||| ||| | |||| |||
Sbjct 86 TCAGCTCAAGTGAACCCAGACCAGAAAGTTGACATGGAGGTCGAAGCCGTGGCCCCAAAA 145
Query 168 GCCGAGACCGGCGATgagaaacgtgagagagaggagacagaggaagaagagaacggaggt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 GCCGAGACCGGCGATGAGAAACGTGAGAGAGAGGAGACAGAGGAAGAAGAGAACGGAGGT 205
Query 228 gaatcgaagaagcagaaggttgg-agaggaagagaagTCAGGTCCGGTTAAACTTGGTCC 286
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 206 GAATCGAAGAAGCAGAAGGT-GGCAGAGGAAGAGAAGTCAGGTCCGGTTAAACTTGGTCC 264
Query 287 CAAGGAGTTTGTTACCTCTGTGGCGATGTTCGATTACTTTGTCAAGTTTTTACACTTTTG 346
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 265 GAAGGAGTTTGTTACCTCTGTGGCGATGTTCGATTACTTTGTCAAGTTTTTGCACTTTTG 324
Query 347 GCCAACTGATCTCGATGTTAATAAGTATGAGCACATGGTGCTGCTAGATCTGATTAAGAA 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 325 GCCAACTGATCTCGATGTTAATAAGTATGAGCACATGGTGCTGCTAGATCTGATCAAGAA 384
Query 407 GGGCCATTCTGAGCCTGAAAAGAAGATTGGAGGAGGAATCAAAACCTTCCAAGTAAGAAC 466
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 GGGCCACTCTGAGCCTGAAAAGAAGATTGGAGGAGGAATCAAAACCTTCCAAGTCAGAAC 444
Query 467 CCACCCAATGTGGAAAAGCAGATGCTTCTTTCTGGTTAGGGAAGACGATACTGCAGACGA 526
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCACCCAATGTGGAAAAGCCGATGCTTCTTTCTGGTTAGGGAAGACGATACTGCAGACGA 504
Query 527 TTTCAGCTTCAGGAAGTGTGTTGATCAAATCCTCCCATTGCCTGAAAACATGAAGACTCC 586
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct 505 TTTCAGCTTCAGGAAGTGTGTTGATCACATCCTTCCATTGCCTGAAAACATGAAGAGTCC 564
Query 587 TGGAGCTAACGGCAATGGACAtgg---tggaggtcgcggtggcggtggtggaagaagagg 643
||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 565 TGGAGCTAATGGCAATGGACATGGCGGTGGTGGTCGTGGTGGCGGTGGTGGAAGAAGAGG 624
Query 644 cggtcgtggtggtggtAGAGGAGGGAGATTCAGAAGATGAATATGCTGACACTTGATGCC 703
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 625 TGGCCGTGGTGGTGGTAGAGGCGGGAGATTCAGAAGATGAATTTGCTGACACTTGATACC 684
Query 704 TTATTTCAAAAGAAAATTTTGAAAATTTCAGATTT 738
|||||||||||||||||||||||||||||||||||
Sbjct 685 TTATTTCAAAAGAAAATTTTGAAAATTTCAGATTT 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5