BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62460.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496422 jgi|Araly1|496422|fgenesh2_kg.8__2238__AT5G62460.1 1607 0.0
Ahg323367 jgi|Araly1|323367|fgenesh1_pm.C_scaffold_5000911 588 4e-167
> Ahg496422 jgi|Araly1|496422|fgenesh2_kg.8__2238__AT5G62460.1
Length=1278
Score = 1607 bits (870), Expect = 0.0
Identities = 1201/1348 (89%), Gaps = 73/1348 (5%)
Strand=Plus/Plus
Query 1 GAAATTTTGATTTACTTATCTGAATATTTTTCCAGACCGAACATCAAACAAGAAAACACA 60
||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||
Sbjct 1 GAAATTTTGATTTACTTATCTGAGT-TTTTTTCTGACCGAACATCAAACAAGAAAACACA 59
Query 61 TTTGTCCGAATTTCATCTTGAGAGCTGTTTGTGCCCTTCAAGAAATCGAAAGAGAGCTTC 120
||||||||||||||||| ||| |||||| ||| ||||||||||||| |||||||||||||
Sbjct 60 TTTGTCCGAATTTCATC-TGAAAGCTGTGTGTCCCCTTCAAGAAATTGAAAGAGAGCTTC 118
Query 121 TTTCCCCCATTTTCTGCGATTCACG-ATATTTCTTCTTCTATAGGACAACG-tttttttA 178
||| |||||||||||||||||| | ||| |||||| | || ||| ||||| ||||||||
Sbjct 119 TTT-TCCCATTTTCTGCGATTCA-GAATAATTCTTC-TATAGAGGTCAACGTTTTTTTTA 175
Query 179 CACATTGAGGCTAAAAGAGAGATGGCTGATGATCAGAGTTCAAGTACTGACCGTCTCGTG 238
| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 176 CGCATTGAGGCTAAAAGAGAGATGGCTGATGATCTGAGTACAAGTACTGACCGTCTCGTA 235
Query 239 AAACCTGAAAGTTTAAACTCAGATAGAGGATCCAATCAATCTATTGAATCTTCTGGAGAG 298
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 236 AAACCTGAAAGTTTAAATTCAGAGAGAGGATCCAATCAATCGATTGAATCTTCTGGAGAG 295
Query 299 AGTTCTAGAGCTCAGGGTTCCACAAGCCTGTCTACTACTAAATCTATGGATGGTAAGAAA 358
||||||| |||||| ||| ||| ||||||| |||||||||||| |||
Sbjct 296 AGTTCTAAAGCTCAAGGTCCCAAAAGCCTG------------TCTATGGATGGT---AAA 340
Query 359 ACCGAGGAAGAAGAGACAACGGAACAACGCGATGTTGATGATGAAGAGGAACCGCTCATC 418
|||||||| || ||| |||| |||||||||||||||| ||| |||||||||||||| |||
Sbjct 341 ACCGAGGACGATGAGGCAACAGAACAACGCGATGTTGCTGAGGAAGAGGAACCGCTTATC 400
Query 419 CAATCGGTTGAATGTCGTATATGCCAAGAGGAGGATTCCGTTAAGAACCTCGAGTCCCCT 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 401 CAATCGGTTGAATGTCGTATATGCCAAGAGGAGGATTCAGTTAAGAACCTCGAGTCCCCT 460
Query 479 TGTTCTTGTAGTGGCAGTTTGAAGTATGCTCATCGTAAGTGTGTTCAACGTTGGTGTAAT 538
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 461 TGTTCTTGTAGTGGTAGTTTGAAGTATGCACATCGGAAGTGTGTTCAACGTTGGTGTAAT 520
Query 539 GAGAAAGGCGACACAACCTGTGAAATATGCCACAAGTCTTATCAACCTGGATACACCGCT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GAGAAAGGCGACACAACCTGTGAAATATGCCACAAGTCTTATCAACCTGGATACACCGCT 580
Query 599 CCTCCTCCTCCTCCCGCTGATGATACCATTATTGATATCGGTGAAGATTGGGGCAATGGT 658
|||||||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||
Sbjct 581 CCTCCTCCTCCTCCTGCTGATGATACCATAATTGATATCGGTGAAGACTGGGCCAATGGT 640
Query 659 GTTCACTTAGATTTGAATGACCCACGCATTTTGGCAATGGCGGCTGCAGAACGCCATTTC 718
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 641 GTTCCCTTAGATTTGAATGATCCACGCATTTTGGCAATGGCGGCTGCAGAACGCCATTTC 700
Query 719 TTTGATGCGGACTATGACGAATACGCTGATTCTAACTCTAGCGGAGCTGCATTCTGTCGC 778
|||||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct 701 TTTGATGCTGACTATGACGAATATGCGGATTCTAACTCGAGCGGAGCTGCATTTTGTCGC 760
Query 779 TCTGCTGCTCTTATATTAATGGCGCTTTTACTCTTACGACACGCTCTAAATCTTACAAAC 838
|| ||||||||||| ||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct 761 TCCGCTGCTCTTATTTTAATGGCGCTTTTACTGTTACGGCACGCTCTGAACCTTACAAAC 820
Query 839 AACAACTCAGATGACGAAGAAGACGATCCATCAGCTTTCTTCTTTCTTTTCATGCTTCGA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 AACAACTCAGATGACGAAGAAGACGATCCATCAGCTTTCTTCTTTCTTTTCATGCTTCGT 880
Query 899 GCCGCTGGTTTTCTCCTCCCGTGTTACATCATGGCTTGGGCTATTAGTATATTACAACGT 958
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 881 GCCGCGGGTTTTCTTCTCCCGTGTTACATCATGGCATGGGCTATTAGTATATTACAACGT 940
Query 959 CGAAGACAAAGACAGGAAGCTGCTGCTCTAGCTGCGGCAGAAGTAGCGTTTATGTTACAT 1018
|| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 941 CGCAGACAAAGACAGGAAGCTGCTGCTCTGGCTGCTGCCGAAGTAGCGTTTATGTTACAT 1000
Query 1019 AGCGGTGGGGGCGGGGGAGGACAACGCAGAGGAGGTTTGCACTTTGCTGTACCACCAGAG 1078
||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1001 AGCGGCGGAGGCGGGGGTGGACAACGAAGAGGAGGTTTGCACTTTGCTGTTCCACCAGAG 1060
Query 1079 CTTATATCTAATCCACACCACCAACCTGAAGCTTCACCGCAGTGATTATATATTCCCGTC 1138
||| |||||||||||||||||||||||||||||||| | | || || ||| | |
Sbjct 1061 CTTGTATCTAATCCACACCACCAACCTGAAGCTTCA-C-C-GTAATGATA-A------T- 1109
Query 1139 ACCGGTAAGAGAAATCAATCATCAT-CTACGACGTTGGTTtctctctatctctcacttct 1197
| |||||||||||||||||||| | | ||||| ||||||||| ||||| | | |
Sbjct 1110 A----TAAGAGAAATCAATCATCATCCGA-AACGTTTGTTTCTCTC--TCTCT--C-T-T 1158
Query 1198 ctctctGTGTAGTAGCTTGTGTGTTTGTTGTGTACCGGTCTTGCTCTCTCACCAAACACA 1257
|||||||| |||||| |||||| || ||| | ||||||||
Sbjct 1159 -TCTCTGTGAAGTAGC-----------TTGTGT----GT-TTG-----T---CAAACACA 1193
Query 1258 CAAAACTGAGATTATAAAACACGGCAAGTTTCTTTGTCTATTATCTTCTTACAGACGAGA 1317
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1194 CAAAACTGAGATTATAAAACACGGCAAGTTTCTTTGTCTAT---CTTCTTACGGACGAGA 1250
Query 1318 AAAGAAAGATTCTTCACCTATTGGATTT 1345
||||||||||| ||||||||||| ||||
Sbjct 1251 AAAGAAAGATTGTTCACCTATTGAATTT 1278
> Ahg323367 jgi|Araly1|323367|fgenesh1_pm.C_scaffold_5000911
Length=879
Score = 588 bits (318), Expect = 4e-167
Identities = 525/625 (84%), Gaps = 14/625 (2%)
Strand=Plus/Plus
Query 407 GAACCGC-TCATCCAATCGGTTGAATGTCGTATATGCCAAGAGGAGGATTCCGTTAAGAA 465
||||| | || ||||||| || || |||||||| ||||| ||||| ||| || ||||||
Sbjct 181 GAACCACTTC-TCCAATCTGTGGAGTGTCGTATTTGCCAGGAGGAAGATACCACTAAGAA 239
Query 466 CCTCGAGTCCCCTTGTTCTTGTAGTGGCAGTTTGAAGTATGCTCATCGTAAGTGTGTTCA 525
||| ||| | |||||| |||||| ||||||||||||||||||||| || |||||||||||
Sbjct 240 CCTTGAGGCTCCTTGTGCTTGTAATGGCAGTTTGAAGTATGCTCACCGCAAGTGTGTTCA 299
Query 526 ACGTTGGTGTAATGAGAAAGGCGACACAACCTGTGAAATATGCCACAAGTCTTATCAACC 585
||||||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||
Sbjct 300 GCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGCCTTATCAACC 359
Query 586 TGGATACACCGCTCCTCCTCCTCCTCC-CGCTGATGATACCATTATTGATATCGGTGAAG 644
|||||| || || ||||| |||||||| | ||||||| || || ||| |||||||||| |
Sbjct 360 TGGATATACAGCACCTCCGCCTCCTCCTC-CTGATGAAACTATAATTCATATCGGTGACG 418
Query 645 ATTGGG-GCAATGGTGTTCACTTAGATTTGAATGACCCACGCATTTTGGCAATGGCGGCT 703
|||||| | || || |||| ||| || |||| || ||||||||| |||||||||| ||
Sbjct 419 ATTGGGAG-AACGGAGTTCCCTTGGACTTGAGCGATCCACGCATTCTGGCAATGGCTGCA 477
Query 704 GCAGAACGCCATTTCTTTGATGCGGACTATGACGAATACGCTGATTCTAACTCTAGCGGA 763
|||||||| |||||||| || || ||||||||||| || |||| |||||||| ||||||
Sbjct 478 GCAGAACGTCATTTCTTGGAAGCTGACTATGACGAGTATTCTGAGTCTAACTCAAGCGGA 537
Query 764 GCTGCATTCTGTCGCTCTGCTGCTCTTATATTAATGGCGCTTTTACTCTTACGACACGCT 823
||||| || ||||||||||||||||| || ||||||| ||||| || |||||| | ||
Sbjct 538 GCTGCCTTTTGTCGCTCTGCTGCTCTCATCCTAATGGCACTTTTGCTGTTACGAGATGCA 597
Query 824 CTAAATCTTACAAACAACAACTCAGATGACGAAGAAGACGATCCATCAGCTTTCTTCTTT 883
|||||||| || ||| | ||||||||||||| || ||||||||| | || |||||||
Sbjct 598 CTAAATCTCAC-AAC-A-AACTCAGATGACG-AG--GACGATCCAACTGCCTTCTTCTCG 651
Query 884 CTTTTCATGCTTCGAGCCGCTGGTTTTCTCCTCCCGTGTTACATCATGGCTTGGGCTATT 943
|||||| | ||||| || ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 652 CTTTTCCTTCTTCGCGCTGCTGGTTTTCTCCTCCCATGTTACATCATGGCATGGGCCATC 711
Query 944 AGTATATTACAACGTCGAAGACAAAGACAGGAAGCTGCTGCTCTAGCTGCGGCAGAAGTA 1003
||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 712 GGTATACTACAACGTCGAAGACAAAGACAGGAAGCAGCGGCTCTAGCTGCCGCAGAAGTT 771
Query 1004 GCGTTT-ATGTTACATAGCGGTGGG 1027
|| ||| ||| |||| | ||||||
Sbjct 772 GC-TTTCATGATACACGGTGGTGGG 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5