BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62470.2
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496423 jgi|Araly1|496423|fgenesh2_kg.8__2239__AT5G62470.1 1777 0.0
Ahg937505 jgi|Araly1|937505|scaffold_501696.1 556 1e-157
Ahg919629 jgi|Araly1|919629|scaffold_100910.1 267 3e-70
Ahg336488 jgi|Araly1|336488|fgenesh1_pg.C_scaffold_1003053 230 4e-59
> Ahg496423 jgi|Araly1|496423|fgenesh2_kg.8__2239__AT5G62470.1
Length=1221
Score = 1777 bits (962), Expect = 0.0
Identities = 1176/1269 (93%), Gaps = 55/1269 (4%)
Strand=Plus/Plus
Query 244 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60
Query 304 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120
Query 364 CCAAC-ACACACAGGTTTGAGAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTA 422
||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAACTA-ACACAGGTTT--G-AGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTA 176
Query 423 TCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACAATTGTTCA 482
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 177 TCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACTATTGTTCA 236
Query 483 TCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGAC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGAC 296
Query 543 AGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAAAAGATTAA 602
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 297 AGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAGAAGGTTAA 356
Query 603 TGAATCTGGTGAAGAAGATAATGATGGTGTCTCTTCATCAAACACTAGTTCACAAAAGAA 662
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 357 TGAATCTGGTGAAGAAGATAATGATGGTGTCTCCTCATCAAACACTAGCTCACAAAAGAA 416
Query 663 CCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGACATTAACATGGC 722
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 CCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGATATTAACATGGC 476
Query 723 AAAACAAGCTCTTTGTGAGGCCTTGTCTTTAGACAAACCATCATCCACTCTTTCATCATC 782
||||||||||||||||||||||||||||||||||||| | ||| || ||||||
Sbjct 477 AAAACAAGCTCTTTGTGAGGCCTTGTCTTTAGACAAA-C--CAT-CA-----TCATCA-- 525
Query 783 TTCATCATTACCGACACCAGTAATCACACAACAAAACATCCGTAACTTCTCATCAGCTTT 842
||||| || ||||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct 526 -TCATCGTTGCCGACACCAGTAATCACGCAACAAAACATCCATAGCTTCTCATCAGCTTT 584
Query 843 GCTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCATCT---ACCACAACCACCACTAC 899
|||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||
Sbjct 585 GCTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCCTCTACAACCACAACTACGACTAC 644
Query 900 AAGCAACACTACTAATCCATACCCATCAGGGGTATATGCGTCAAGTGCTGAGAACATCGC 959
|||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 645 AAGCAATACTACCAATCCACACCCATCAGGTGTATATGCGTCAAGTGCTGAGAACATCGC 704
Query 960 CCGGTTGCTTCAAGATTTCATGAAAGACACACCCAAGGCTTTAACTTTATCATCTTCATC 1019
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 705 TCGGTTGCTTCAAGATTTCATGAAAGACACACCAAAGGCTTTAACTTTATTATCTTCATC 764
Query 1020 TCCGGTTTCAGAGACTGGACCACTCACTGCTGCAGTCTCGGAAGAAGGTGGAGAAGGGTT 1079
||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 765 TCCAGTTTCAGAGACCGGACCACTCGCTGCTGCAGTCTCGGAAGAAGGTGCAGAAGGGTT 824
Query 1080 TGAACAATCTTTCTTCAGCTTCAATTCAATGGACGAAACTCAAAACTTGACTCAGGAGAC 1139
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 825 TGAACAATCTTTCTTCAGCTTCAATTCAATGGAAGAAACTCAAAACTTGACTCAGGCGAC 884
Query 1140 AAGCTTCTTCCATGATCAAGTGATCAAACCGGAAATAACAATGGACCAAGATCATGGTCT 1199
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 885 AAGCTTCTTCCATGATCAAGAGATCAAACCGGAAATAATAATGGACCAAGATCATGGTTT 944
Query 1200 AATATCACAAGGGTCTCTGTCTTTGTTTGAGAAATGGTTATTTGATGAGCAAAGCCACGA 1259
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 945 AATATCACAAGGGTCTCTGTCTTTGTTGGAGAAATGGTTATTTGATGAGCAAAGCCACGA 1004
Query 1260 GATGGTTGGTA---TGGCACTAGCAGGACAAGAAGGGATGTTCTAGTTCTAGAAGACTGT 1316
||||||||||| ||||||||| |||||||||||||||||||||||||| |||
Sbjct 1005 GATGGTTGGTATGGTGGCACTAGAAGGACAAGAAGGGATGTTCTAGTTCT---AGA---- 1057
Query 1317 CTAGAACTAACAAAGTGGGATCTTTTTAAAATTGAGGGCTTAATTAGTTATGAGTTATAA 1376
|| || | ||||| || |||||||||||||||||||||||||||||
Sbjct 1058 --AG-----AC---------T-TTTTT-AAGTTGAGGGCTTAATTAGTTATGAGTTATAA 1099
Query 1377 CAAATAATATAGAGTTATAACCTATGATATATATGCTTATTATTGCTTTAGGGTTTTAGA 1436
||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 1100 CAAATAATATAGAGTTATAACCTAT-AT------GCTTATTATTGCATTAGGGTTTTAGA 1152
Query 1437 GTCTTTAGTAGCTAGCTTTTAGCTCTACAACACTCTTTTCCCCTTTTGGTGATATAAATC 1496
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1153 GTCTTTAGTAGCTAGCTTTTAGCTCTACAACACTCTTTTTCCCTTTTGGTGATATAAATA 1212
Query 1497 TCTCTTTTT 1505
||||| |||
Sbjct 1213 TCTCTCTTT 1221
> Ahg937505 jgi|Araly1|937505|scaffold_501696.1
Length=1043
Score = 556 bits (301), Expect = 1e-157
Identities = 466/542 (86%), Gaps = 25/542 (5%)
Strand=Plus/Plus
Query 244 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 303
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 23 ATGGGAAGACCACCATGCTGTGACAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 82
Query 304 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 363
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 GAAGATATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTG 142
Query 364 CCAACACACACAGGTTTGAGAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTAT 423
|| || || ||||||||||| ||||||||||| || || |||||||| ||||||||||||
Sbjct 143 CCTACTCATACAGGTTTGAGGAGATGTAGCAAAAGTTGTAGATTGAGGTGGACTAATTAT 202
Query 424 CTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACAATTGTTCAT 483
|||||||| || ||||||||||||||||| || |||||||||||||||| ||| | |||
Sbjct 203 CTTCGACCTGGGATTAAGCGTGGAAATTTCACCGAGCATGAAGAGAAGATGATTCTCCAT 262
Query 484 CTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGACA 543
|||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 263 CTTCAAGCTCTTTTGGGCAACAGGTGGGCAGCTATAGCATCATACCTTCCAGAAAGGACA 322
Query 544 GACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAAAAGATTAAT 603
|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 323 GACAATGATATAAAGAACTATTGGAACACTCATTTGAAGAAAAAGCTCAAGAAGATGAAT 382
Query 604 GAATCTGGTGA-AGAAG-AT-AATGATGGTGTCTCTTCATCAA-ACA-CTAGT--TCA-- 654
|| ||| |||| || | || || |||| | | | || || || || | |||
Sbjct 383 GATTCTTGTGATAGTACTATCAACAATGGCCT-TGATGATAAAGACTTCTCTTCATCAAA 441
Query 655 CAAAAG-A--AC--CA--TCAAAGCA-CTA----A-CAAAGGTCAATGGGAAAGAAGACT 701
||||| | || || |||||||| | | | ||||||||||||||| ||||| ||
Sbjct 442 CAAAAACACTACTTCACATCAAAGCAGCAACCCCAGCAAAGGTCAATGGGAGAGAAGGCT 501
Query 702 TCAGACAGACATTAACATGGCAAAACAAGCTCTTTGTGAGGCCTTGTCT-TTAGACAAAC 760
||||||||| || |||||||| ||||||||||||||||| ||||||||| || |||||||
Sbjct 502 TCAGACAGATATCAACATGGCTAAACAAGCTCTTTGTGATGCCTTGTCTCTT-GACAAAC 560
Query 761 CA 762
||
Sbjct 561 CA 562
> Ahg919629 jgi|Araly1|919629|scaffold_100910.1
Length=934
Score = 267 bits (144), Expect = 3e-70
Identities = 294/364 (81%), Gaps = 20/364 (5%)
Strand=Plus/Plus
Query 244 ATGGGAAGACCACCTTGCTGTGAAAAGAT-TGGAGTGAAGAAAGGGCCATGGACACCAGA 302
||||| || || || |||||||| ||||| ||| | |||||||| |||||||| || ||
Sbjct 21 ATGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGACCATGGACTCCTGA 79
Query 303 GGAAGACATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 361
||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 AGAAGATATCATTCTT-GTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 138
Query 362 T-CCCAACACACACAGGTTTGA--GAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTA 418
| |||| || | || || | | || |||| ||||| || || ||| | |||||||| |
Sbjct 139 TTCCCACCA-ATACTGGGCT-ACTGA-GATGCAGCAAAAGTTGTAGACTCAGATGGACAA 195
Query 419 ATTATCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACA--AT 476
||||||| |||| || ||||| |||||||| |||||| |||||||| | || | ||
Sbjct 196 ATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGA-AGGA-ATGAT 253
Query 477 TGTTCATCTT-CAAGCCCTT-TTAGGCAACAGATGGGCAG-CCATAGCATCATACCTTCC 533
|||| ||| |||||| || || || |||| |||||| | ||||||| ||||| || ||
Sbjct 254 CATTCA-CTTGCAAGCC-TTATTGGGTAACAAATGGGC-GTCCATAGCTTCATATCTACC 310
Query 534 AGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAA 593
| |||| || ||||||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct 311 ACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTGAAGAAGAAGCTCAA 370
Query 594 AAAG 597
|||
Sbjct 371 CAAG 374
> Ahg336488 jgi|Araly1|336488|fgenesh1_pg.C_scaffold_1003053
Length=486
Score = 230 bits (124), Expect = 4e-59
Identities = 131/134 (98%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 244 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60
Query 304 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120
Query 364 CCAAC-ACACACAG 376
||||| | ||||||
Sbjct 121 CCAACTA-ACACAG 133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5