BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62490.1
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496427 jgi|Araly1|496427|fgenesh2_kg.8__2243__AT5G62490.1 946 0.0
> Ahg496427 jgi|Araly1|496427|fgenesh2_kg.8__2243__AT5G62490.1
Length=710
Score = 946 bits (512), Expect = 0.0
Identities = 634/690 (92%), Gaps = 20/690 (3%)
Strand=Plus/Plus
Query 53 aaaaaaaaCAATTCAACTGCAAAAATGAGTTCCGGAATCGGAAGTTTAGTGAAGGTCATC 112
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 32 AAAAAAAACAATTCAACTGCAAAAATGAGTTCCGGTATCGGAAGTTTAGTGAAGGTCATC 91
Query 113 TTTAAGAACTTCGATGTCATCGCTGGACCTGTGATTAGCTTGGTTTATCCTCTATATGCA 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 TTTAAGAACTTCGATGTCATCGCTGGACCTGTGATTAGCTTGGTTTATCCTCTATATGCA 151
Query 173 TCAGTGAGGGCAATAGAGTCGAGGAGTCATGGAGACGACAAGCAATGGTTGACGTATTGG 232
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 152 TCAGTGAGGGCAATAGAGTCGAGGAGTCATGGAGACGACAAACAATGGTTGACGTATTGG 211
Query 233 GCTCTCTATTCACTTATCAAACTCTTTGAGCTCACTTTTTTCAGACTCCTCGAATGGATC 292
|||||||| ||||||||||||||||||||||||||||| | | ||||| | |||||||||
Sbjct 212 GCTCTCTACTCACTTATCAAACTCTTTGAGCTCACTTTCTACGGACTCATTGAATGGATC 271
Query 293 CCATTATATCCATACGCAAAGCTAGCCCTAACTAGTTGGTTGGTCTTACCGGGCATGAAC 352
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 272 CCATTATATCCATACGCCAAGCTAGCCCTAACTAGTTGGTTGGTCTTACCGGGCATGAGC 331
Query 353 GGTGCTGCTTATCTCTACGAGCACTATGTGCGTTCATTCCTTTTAAGCCCACATACTGTT 412
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GGCGCTGCTTATCTCTACGAGCACTATGTGCGTTCATTCCTTTTAAGCCCACATACTGTT 391
Query 413 AACGTATGGTACGTGCCAGCCAAGAAGGATGACGACTTGGGAGCAACCGCTGGCAAATTT 472
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 392 AACGTATGGTACGTGCCAGCCAAGAAGGATGACGATTTAGGAGCAGCCGCTGGCAAATTT 451
Query 473 ACTCCAGTAAATGATTCCGGTGCGCCTCAGGAAAAGATTGTGAGCTCGGTGGATACATCA 532
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 ACTCCGGTAAATGATTCCGGTGCGCCTCAGGAAAAGATTGTGAGCTCGGTGGATACATCA 511
Query 533 GCAAAATATGTTGGTCATTCGGCTTTTGATGACGCCTATATCTACTAGGCTAGTAGCTAG 592
|| |||||||||||||| || ||||| |||||| |||||| ||||||| || | |||
Sbjct 512 GCCAAATATGTTGGTCACTCTGCTTTCGATGACACCTATAGCTACTAG--TAA-A-CTAC 567
Query 593 TAAACTACTTCCGGCTAGTTGTAGCTGAGCATCCT-----GATCTTAGTGTATCGAAATA 647
|| | | | | || ||||||||||| ||| | ||||||||||||||| | ||
Sbjct 568 TA--C-A-T---G-CTGGTTGTAGCTGAATATCGTTTACCGATCTTAGTGTATCGTA-TA 618
Query 648 CTTGTTTTCTCCTCTTT-TTCTTT-GTTTTCGGGTTTTATGAAGTTTGTTGTTACTGCTA 705
|||||||| | || ||| || ||| ||||||||||||||||||||||||||| |||||||
Sbjct 619 CTTGTTTTTTTCTTTTTCTTTTTTTGTTTTCGGGTTTTATGAAGTTTGTTGTCACTGCTA 678
Query 706 AGGAATTTTAATATCAAAATAAATGTTAAT 735
|| ||||| |||||||||||||| ||||||
Sbjct 679 AGAAATTTCAATATCAAAATAAAAGTTAAT 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29316523173
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5