BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62500.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496428 jgi|Araly1|496428|fgenesh2_kg.8__2244__AT5G62500.1 1670 0.0
Ahg485133 jgi|Araly1|485133|fgenesh2_kg.5__1125__AT3G47690.1 556 1e-157
> Ahg496428 jgi|Araly1|496428|fgenesh2_kg.8__2244__AT5G62500.1
Length=1284
Score = 1670 bits (904), Expect = 0.0
Identities = 1023/1078 (95%), Gaps = 18/1078 (2%)
Strand=Plus/Plus
Query 285 AAAAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAATGAGAT 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 224 AAAAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAACGAGAT 283
Query 345 TCTGAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATC 404
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TCTCAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATC 343
Query 405 AGGTGCTGTGCAATGTCAAATGTTGGACATGACTTTTCCAGGAGTTGTGCCAATGCACAA 464
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 344 GGGTGCTGTGCAATGTCAAATGTTGGACATGACCTTTCCAGGAGTTGTGCCAATGCACAA 403
Query 465 GGTTAACTTTGAAGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTCATGCAAGA 524
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 404 GGTTAACTTTGATGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTTATGCAAGA 463
Query 525 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 523
Query 585 ACCACTAGACAATTTGGAGTTTCTTCAATGGTTGAAACGTTTTTGCGATTCAATAAATGG 644
|||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||
Sbjct 524 ACCACTAGACAATTTGGAGTTTCTACAATGGCTGAAACGATTTTGCGATTCCATAAATGG 583
Query 645 CGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGGAGAGAGAA 704
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 584 TGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGCAGAGAGAA 643
Query 705 AAGCGTAAAGGGATCTAGTAAGATCTCAAAGTCATTGCAAACAAACAATATGCATCATCC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AAGCGTAAAGGGATCTAGTAAGATCTCAAAGTCATTGCAAACAAACAATATGCATCATCC 703
Query 765 TCCTGTGGCTACTTCCAACAAACCAGCTGGTCCCAAGCAAGCAAAATCACATGGAATTGG 824
||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 704 TCCAGTCACTACTTCCAACAAACCACCTGGTCCCAAGCAAGCAAAATCACATGCAATTGG 763
Query 825 AGGTGGGAGCAACTCATCAGCCGAAGTGCAAGCTCTGTCAAAGGAGGTAGAAGATCTCAA 884
|||||| |||||| |||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 764 AGGTGGAAGCAACACATCAGCCGAAGTGCAAGCTCTGTCAAAAGAGGTAGCAGATCTCAA 823
Query 885 GGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGGATAT 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGGATAT 883
Query 945 AGAGATACTATGTCAGACTCCTGAACTCGATGATCTTCCGATAGTGGTAGCGGTTAAGAA 1004
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 884 AGAGATACTATGTCAGACTCCTGAACTTGATGATCTTCCGATAGTGGTAGCGGTTAAGAA 943
Query 1005 GATATTATACGCAACCGATGCAAATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCCTAAA 1064
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 944 GATATTATACGCAACCGATGCAGATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCCTAAA 1003
Query 1065 CCAGTCTCTAGGGCTTGAGGGTT-ATgaagaagaaggaaaagaggaggaagaagaagaag 1123
|||||||||||||||||||| || ||||||||||||||||||| || | | |||||||
Sbjct 1004 CCAGTCTCTAGGGCTTGAGG-TTGATGAAGAAGAAGGAAAAGA--AG-A-G--GAAGAAG 1056
Query 1124 aagaagaagaagaagaagCAGCAGCTGCTGCAGAGACCCAAACTTAAAGTTGTGACAAAT 1183
||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1057 AAGAAGAAGAAGAAG---CAGCAGC------AGAGACCCAAACTTAAAGTTGTGACAAAT 1107
Query 1184 AAAAGTAGAGGGCAACAATGATCCATTGCCTTGTCTTAGAAGATAGAATCACTTGGAGAG 1243
||||||||||| |||| ||| | ||||||||||| |||||||||||| ||||||||||||
Sbjct 1108 AAAAGTAGAGGACAACGATGGTTCATTGCCTTGTATTAGAAGATAGA-TCACTTGGAGAG 1166
Query 1244 GATGTTTGCACAATATTCAATTTACCCTAACCGGTTTTTTGGTTTTACAGTGAACTGAAC 1303
| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1167 GGTGTTTGCACAATATTCAATTTACCCTAACCGGCTTTTTGGTTTTAAAGTGAACTGAAC 1226
Query 1304 CGAATTTATTCCTTCCTAAACTTGAAAGATTATCTGATGGATTTTCATTGTATCACAA 1361
||||||| ||||||||||| |||||||||||| |||||| |||||| ||||||||||
Sbjct 1227 CGAATTTGCTCCTTCCTAAATTTGAAAGATTATATGATGGGTTTTCACTGTATCACAA 1284
Score = 246 bits (133), Expect = 3e-64
Identities = 200/229 (87%), Gaps = 17/229 (7%)
Strand=Plus/Plus
Query 38 tctctaacctttgcttctccgtccttttctctg--cttcagttttctcttcCTAACAAGC 95
||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TCTCTAACCTTCGATTCTCCGTCCTTTTCTCTGCTCTTCAGTTTTCTCTTCCTAACAAGC 60
Query 96 AAAACCCG-AAA-CAGATCGAA-CCAtttttttCCTTTA-GAAA-TTAAACAACAAAAAT 150
||||||| ||| ||||||||| |||||||||||||| | |||| ||||| || |||| |
Sbjct 61 AAAACCCCCAAAACAGATCGAATCCATTTTTTTCCTTAAAGAAACTTAAA-AAGAAAATT 119
Query 151 CAtttttttGTTTGTTTT-CGGTTTCACCTAACCAAATTGATTCTCTTACCTTTTTATAT 209
| ||||||| ||| |||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 120 CCTTTTTTTTTTTTTTTTTC--TTTCACCTAACCAAATTGATTCTCTTACCTTTT-AT-- 174
Query 210 CACATTGC---ATCTGGGTTTCCATTAGAAACAACAACAAACGAAAAAA 255
|||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct 175 CACATTGCTGCATCTGGGTTTTCAATAGAAACAACAACAAACAAAAAAA 223
> Ahg485133 jgi|Araly1|485133|fgenesh2_kg.5__1125__AT3G47690.1
Length=1272
Score = 556 bits (301), Expect = 1e-157
Identities = 424/483 (88%), Gaps = 9/483 (2%)
Strand=Plus/Plus
Query 287 AAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAATGAGATTC 346
|||||||||||||||| || |||||||||||||||||||| || ||||| || |||||||
Sbjct 247 AAATGGCGACGAACATCGGAATGATGGATAGTGCTTACTTCGTCGGAAGAAACGAGATTC 306
Query 347 TGAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATCAG 406
||| |||||||||||| || ||||| |||||||||||||| |||||||||||||||| |
Sbjct 307 TGACTTGGATCAATGATCGTCTTCAGCTCAATCTCTCTCGCGTCGAAGAGGCTGCATCCG 366
Query 407 GTGCTGTGCAATGTCAAATG-TTGGACATGACTTTTCCAGGAGTTGTGCCAATGCACAAG 465
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 367 GTGCTGTGCAATGTCAAATGCTT-GATATGACCTTTCCAGGAGTTGTGCCAATGCACAAG 425
Query 466 GTTAACTTTGAAGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTCATGCAAGAA 525
||||||||||| ||||||||||||||||| |||||||| ||||||||| || |||||||
Sbjct 426 GTTAACTTTGATGCAAAGAACGAGTACGACATGATACAGAACTACAAGATCCTGCAAGAT 485
Query 526 GTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCGA 585
|| |||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 486 GTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGGCTTGTCAAAGGCCGA 545
Query 586 CCACTAGACAATTTGGAGTTTCTT-CAATGGTTGAAACGTTTTTGCGATTCAATAAATGG 644
||||| ||||| ||||||||| || |||||| |||||||||| || ||||| || |||||
Sbjct 546 CCACTGGACAACTTGGAGTTT-TTGCAATGGCTGAAACGTTTCTGTGATTCCATTAATGG 604
Query 645 CGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGGAGAGAGAA 704
||||||||||| ||||||||||||||||| || |||||||||||| ||| | |||||
Sbjct 605 TGGCATTATGAATGAGAATTATAATCCAGTGGAGCGAAGATCAAGAAATGGTAAAGAGAG 664
Query 705 AAGCGTAAAGGGATCTAGTAAGATCTC-AAAGTCATTGCAAACAAACAATATGCATCATC 763
|| || |||||||||| ||||| || ||||||| ||||||| ||||||| ||||||
Sbjct 665 GAGTGTGAAGGGATCTAACAAGAT-TCCAAAGTCACTGCAAACTAACAATA---ATCATC 720
Query 764 CTC 766
|||
Sbjct 721 CTC 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5