BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62500.1 Length=1408 Score E Sequences producing significant alignments: (Bits) Value Ahg496428 jgi|Araly1|496428|fgenesh2_kg.8__2244__AT5G62500.1 1670 0.0 Ahg485133 jgi|Araly1|485133|fgenesh2_kg.5__1125__AT3G47690.1 556 1e-157 > Ahg496428 jgi|Araly1|496428|fgenesh2_kg.8__2244__AT5G62500.1 Length=1284 Score = 1670 bits (904), Expect = 0.0 Identities = 1023/1078 (95%), Gaps = 18/1078 (2%) Strand=Plus/Plus Query 285 AAAAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAATGAGAT 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 224 AAAAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAACGAGAT 283 Query 345 TCTGAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATC 404 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 284 TCTCAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATC 343 Query 405 AGGTGCTGTGCAATGTCAAATGTTGGACATGACTTTTCCAGGAGTTGTGCCAATGCACAA 464 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 344 GGGTGCTGTGCAATGTCAAATGTTGGACATGACCTTTCCAGGAGTTGTGCCAATGCACAA 403 Query 465 GGTTAACTTTGAAGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTCATGCAAGA 524 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 404 GGTTAACTTTGATGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTTATGCAAGA 463 Query 525 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 523 Query 585 ACCACTAGACAATTTGGAGTTTCTTCAATGGTTGAAACGTTTTTGCGATTCAATAAATGG 644 |||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||| Sbjct 524 ACCACTAGACAATTTGGAGTTTCTACAATGGCTGAAACGATTTTGCGATTCCATAAATGG 583 Query 645 CGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGGAGAGAGAA 704 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 584 TGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGCAGAGAGAA 643 Query 705 AAGCGTAAAGGGATCTAGTAAGATCTCAAAGTCATTGCAAACAAACAATATGCATCATCC 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 644 AAGCGTAAAGGGATCTAGTAAGATCTCAAAGTCATTGCAAACAAACAATATGCATCATCC 703 Query 765 TCCTGTGGCTACTTCCAACAAACCAGCTGGTCCCAAGCAAGCAAAATCACATGGAATTGG 824 ||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 704 TCCAGTCACTACTTCCAACAAACCACCTGGTCCCAAGCAAGCAAAATCACATGCAATTGG 763 Query 825 AGGTGGGAGCAACTCATCAGCCGAAGTGCAAGCTCTGTCAAAGGAGGTAGAAGATCTCAA 884 |||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 764 AGGTGGAAGCAACACATCAGCCGAAGTGCAAGCTCTGTCAAAAGAGGTAGCAGATCTCAA 823 Query 885 GGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGGATAT 944 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 GGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGGATAT 883 Query 945 AGAGATACTATGTCAGACTCCTGAACTCGATGATCTTCCGATAGTGGTAGCGGTTAAGAA 1004 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 884 AGAGATACTATGTCAGACTCCTGAACTTGATGATCTTCCGATAGTGGTAGCGGTTAAGAA 943 Query 1005 GATATTATACGCAACCGATGCAAATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCCTAAA 1064 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 944 GATATTATACGCAACCGATGCAGATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCCTAAA 1003 Query 1065 CCAGTCTCTAGGGCTTGAGGGTT-ATgaagaagaaggaaaagaggaggaagaagaagaag 1123 |||||||||||||||||||| || ||||||||||||||||||| || | | ||||||| Sbjct 1004 CCAGTCTCTAGGGCTTGAGG-TTGATGAAGAAGAAGGAAAAGA--AG-A-G--GAAGAAG 1056 Query 1124 aagaagaagaagaagaagCAGCAGCTGCTGCAGAGACCCAAACTTAAAGTTGTGACAAAT 1183 ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1057 AAGAAGAAGAAGAAG---CAGCAGC------AGAGACCCAAACTTAAAGTTGTGACAAAT 1107 Query 1184 AAAAGTAGAGGGCAACAATGATCCATTGCCTTGTCTTAGAAGATAGAATCACTTGGAGAG 1243 ||||||||||| |||| ||| | ||||||||||| |||||||||||| |||||||||||| Sbjct 1108 AAAAGTAGAGGACAACGATGGTTCATTGCCTTGTATTAGAAGATAGA-TCACTTGGAGAG 1166 Query 1244 GATGTTTGCACAATATTCAATTTACCCTAACCGGTTTTTTGGTTTTACAGTGAACTGAAC 1303 | |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 1167 GGTGTTTGCACAATATTCAATTTACCCTAACCGGCTTTTTGGTTTTAAAGTGAACTGAAC 1226 Query 1304 CGAATTTATTCCTTCCTAAACTTGAAAGATTATCTGATGGATTTTCATTGTATCACAA 1361 ||||||| ||||||||||| |||||||||||| |||||| |||||| |||||||||| Sbjct 1227 CGAATTTGCTCCTTCCTAAATTTGAAAGATTATATGATGGGTTTTCACTGTATCACAA 1284 Score = 246 bits (133), Expect = 3e-64 Identities = 200/229 (87%), Gaps = 17/229 (7%) Strand=Plus/Plus Query 38 tctctaacctttgcttctccgtccttttctctg--cttcagttttctcttcCTAACAAGC 95 ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 TCTCTAACCTTCGATTCTCCGTCCTTTTCTCTGCTCTTCAGTTTTCTCTTCCTAACAAGC 60 Query 96 AAAACCCG-AAA-CAGATCGAA-CCAtttttttCCTTTA-GAAA-TTAAACAACAAAAAT 150 ||||||| ||| ||||||||| |||||||||||||| | |||| ||||| || |||| | Sbjct 61 AAAACCCCCAAAACAGATCGAATCCATTTTTTTCCTTAAAGAAACTTAAA-AAGAAAATT 119 Query 151 CAtttttttGTTTGTTTT-CGGTTTCACCTAACCAAATTGATTCTCTTACCTTTTTATAT 209 | ||||||| ||| |||| | ||||||||||||||||||||||||||||||||| || Sbjct 120 CCTTTTTTTTTTTTTTTTTC--TTTCACCTAACCAAATTGATTCTCTTACCTTTT-AT-- 174 Query 210 CACATTGC---ATCTGGGTTTCCATTAGAAACAACAACAAACGAAAAAA 255 |||||||| |||||||||| || ||||||||||||||||| |||||| Sbjct 175 CACATTGCTGCATCTGGGTTTTCAATAGAAACAACAACAAACAAAAAAA 223 > Ahg485133 jgi|Araly1|485133|fgenesh2_kg.5__1125__AT3G47690.1 Length=1272 Score = 556 bits (301), Expect = 1e-157 Identities = 424/483 (88%), Gaps = 9/483 (2%) Strand=Plus/Plus Query 287 AAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAATGAGATTC 346 |||||||||||||||| || |||||||||||||||||||| || ||||| || ||||||| Sbjct 247 AAATGGCGACGAACATCGGAATGATGGATAGTGCTTACTTCGTCGGAAGAAACGAGATTC 306 Query 347 TGAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATCAG 406 ||| |||||||||||| || ||||| |||||||||||||| |||||||||||||||| | Sbjct 307 TGACTTGGATCAATGATCGTCTTCAGCTCAATCTCTCTCGCGTCGAAGAGGCTGCATCCG 366 Query 407 GTGCTGTGCAATGTCAAATG-TTGGACATGACTTTTCCAGGAGTTGTGCCAATGCACAAG 465 |||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||| Sbjct 367 GTGCTGTGCAATGTCAAATGCTT-GATATGACCTTTCCAGGAGTTGTGCCAATGCACAAG 425 Query 466 GTTAACTTTGAAGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTCATGCAAGAA 525 ||||||||||| ||||||||||||||||| |||||||| ||||||||| || ||||||| Sbjct 426 GTTAACTTTGATGCAAAGAACGAGTACGACATGATACAGAACTACAAGATCCTGCAAGAT 485 Query 526 GTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCGA 585 || |||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 486 GTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGGCTTGTCAAAGGCCGA 545 Query 586 CCACTAGACAATTTGGAGTTTCTT-CAATGGTTGAAACGTTTTTGCGATTCAATAAATGG 644 ||||| ||||| ||||||||| || |||||| |||||||||| || ||||| || ||||| Sbjct 546 CCACTGGACAACTTGGAGTTT-TTGCAATGGCTGAAACGTTTCTGTGATTCCATTAATGG 604 Query 645 CGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGGAGAGAGAA 704 ||||||||||| ||||||||||||||||| || |||||||||||| ||| | ||||| Sbjct 605 TGGCATTATGAATGAGAATTATAATCCAGTGGAGCGAAGATCAAGAAATGGTAAAGAGAG 664 Query 705 AAGCGTAAAGGGATCTAGTAAGATCTC-AAAGTCATTGCAAACAAACAATATGCATCATC 763 || || |||||||||| ||||| || ||||||| ||||||| ||||||| |||||| Sbjct 665 GAGTGTGAAGGGATCTAACAAGAT-TCCAAAGTCACTGCAAACTAACAATA---ATCATC 720 Query 764 CTC 766 ||| Sbjct 721 CTC 723 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52640718590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5