BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62510.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358470 jgi|Araly1|358470|fgenesh1_pg.C_scaffold_8002257 878 0.0
Ahg358451 jgi|Araly1|358451|fgenesh1_pg.C_scaffold_8002238 806 0.0
Ahg951049 jgi|Araly1|951049|scaffold_802936.1 804 0.0
Ahg358465 jgi|Araly1|358465|fgenesh1_pg.C_scaffold_8002252 710 0.0
Ahg918030 jgi|Araly1|918030|Al_scaffold_0008_2781 492 3e-138
Ahg951054 jgi|Araly1|951054|scaffold_802941.1 396 2e-109
> Ahg358470 jgi|Araly1|358470|fgenesh1_pg.C_scaffold_8002257
Length=1671
Score = 878 bits (475), Expect = 0.0
Identities = 916/1116 (82%), Gaps = 81/1116 (7%)
Strand=Plus/Plus
Query 1 ATGCGTT-TGTCTGTAGCTCTGATTTCATCTTTTCAATGGAAGAAGAGGTCTTCAAAGGC 59
||| ||| ||||| ||||||||||| | ||| | || |||||||||||||| |||||| |
Sbjct 586 ATG-GTTATGTCTCTAGCTCTGATTGCGTCTATGCATTGGAAGAAGAGGTCGTCAAAGAC 644
Query 60 GATTATgagaagaggaagaaaaagaagaagaagaagacaaagaggagaagatttttttGT 119
|| || || | | | || |||||||||||||||||||||||||| ||||||||||
Sbjct 645 GA-TA--AG-A-A-G-AG-----GAAGAAGAAGAAGACAAAGAGGAGAATATTTTTTTGT 692
Query 120 GGCACCGGAGATTCCTTTGGATCTACTGATCGAGATTCTGACTAGATTGCCT-CATAAAT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 693 GGCACCGGAGATTCCTTTGGATCTACTGATCGAGATTCTGACTAGATTGCCTGC-TAAAT 751
Query 179 CGCTTATGAGGTTCAAGTGCGTTTCAAAGC-AGTGGTCTTCTCTTATCCGTTCCCGATTT 237
||||| |||||||||||||| | ||||||| | ||||||||||||||| |||||||||||
Sbjct 752 CGCTTTTGAGGTTCAAGTGCATCTCAAAGCTA-TGGTCTTCTCTTATCTGTTCCCGATTT 810
Query 238 TTTAGCAACCGTTATCTTACGGTTGCATCTCCACTGCGACCACATCGTCTATACATTAGT 297
|||||||| ||||||| |||||| ||||| ||||||||||||| |||||||||||| |||
Sbjct 811 TTTAGCAATCGTTATCATACGGTCGCATCCCCACTGCGACCACCTCGTCTATACATGAGT 870
Query 298 TTGGTGGACCACAA-GTGTG-A-TTCAAGGGAGGTCTGCCACAGCC-CCCGCG--AGTCT 351
|||||| ||||| ||||| | ||||| |||||| ||||||| || ||| || |||||
Sbjct 871 TTGGTGTACCACCTCGTGTGTAATTCAATGGAGGTTTGCCACAACCACCCCCGTGAGTCT 930
Query 352 GTACTGCTATCAT-T-CTCA-TCGCCTT-CT-AGT-TTCG-ACCAAGATTTGACGACCAT 404
||| |||| |||| | || | | || | || ||| || | | ||||||||||| || |
Sbjct 931 GTATTGCTGTCATCTTCT-AGTAGCAGTGCTGAGTCTTTGGAACAAGATTTGAC-ACT-T 987
Query 405 GCAAGGGATGGGAGGACTACAT-ATGGTGACTCTTCGTGGCTTGATTTTATACATTGTTT 463
||| ||||||||||||| || |||||| |||||| ||||||||| |||||| |||||
Sbjct 988 GCA-GGGATGGGAGGACG-CAACATGGTGGTTCTTCGCGGCTTGATTCTATACAATGTTT 1045
Query 464 GCGGAAAAGCGTGTCTCTATAATCCCACCACCAGACAGAGCGTAACCTTACCCGCCATCA 523
| |||| |||||| |||||||||||||||||| ||| || ||||||||||| || |||
Sbjct 1046 GTAGAAAGGCGTGTATCTATAATCCCACCACCACACAAAGTGTAACCTTACCTGCTGTCA 1105
Query 524 AATTCAACATTTTTG-TCCAAGGAA-ACGAACA-TA-G--TCTCCTCTACTTCTTGGGGC 577
||| |||||| |||| || | | || || | || || | | |||||||||| || || |
Sbjct 1106 AATCCAACATCTTTGCTC-ACG-AATACTA-CAATAAGAGTGTCCTCTACTTTTTTGGAC 1162
Query 578 ACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTTTTGTGTCA-TCATCCTCACAA 636
|||||||||||||||||||||||||||||||||||||| ||| || | ||||||| ||
Sbjct 1163 ACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTGTTG---CAGT-ATCCTCAAAA 1218
Query 637 GAT-TTGGAA-ACGATAATCTCGGAGCATTGGGTCTTCGTACTGGAAGTTGGAGGTTCTT 694
| || || | ||||| ||| |||||||||||||||||||| ||| ||||||||| |
Sbjct 1219 AAAGTT--AAGAGGATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCTGGAGGTTCGT 1276
Query 695 GGAAAAGAATTGAGTTTGATCAACCTCATACTCC-TACGAGATCT-GGACTGTGCATCG- 751
|||||||||||||||| |||||||||||| |||| ||||||| || ||| ||||||||
Sbjct 1277 GGAAAAGAATTGAGTTCGATCAACCTCAT-CTCCCTACGAGA-CTAGGATTGTGCATCAA 1334
Query 752 GTGGAGTTATATATTATCTTG-CTTTCACTAGTATGTTTCAG-GATATCGTTGTCACCTT 809
| ||||||||||||||| ||| ||| |||| ||| | || | ||||||||||||| ||
Sbjct 1335 G-GGAGTTATATATTAT-TTGGCTTCCACTTGTAAGCGTC-GCGATATCGTTGTCAGTTT 1391
Query 810 TGACGTTAGGTCTGAAGAATTTAACATTATCCAAGCG-CCTCTTGTGTTGTCTGCATATG 868
||| ||| |||||||||| || | || ||||||| | |||| |||| || |||| ||||
Sbjct 1392 TGATGTTCGGTCTGAAGAGTTCAGTATGATCCAAG-GACCTCCTGTGGTGCCTGCGTATG 1450
Query 869 TTGA-CTCTCTGG-ATTTTATAGAGTACGGTGGGAAACCAGCTATTTTTTATCATACTAG 926
||| | || ||| |||| |||||||| ||||| ||||||||| || || ||||||| |
Sbjct 1451 GTGAGC-CTGTGGGATTT-ATAGAGTATGGTGGAAAACCAGCTGTTGTTGATCATACCAT 1508
Query 927 TCTTA-AAGAAA-ACGGTTTGGTAGACTTATGGGTCTTGGAAAATGCTGGAAACTGGTCG 984
| || || ||| | ||||| || ||||||||||| |||||| |||||||||| ||||||
Sbjct 1509 T-TTGGAACAAACA-GGTTTAGTGGACTTATGGGTTTTGGAAGATGCTGGAAAATGGTCG 1566
Query 985 AGGACAGTTT-TGAGTTT-GCAGCCTTGTCAGCTGCATTTAGTTGATAACGACATTCCAT 1042
|||| | | | | |||| ||||||||||||| |||| ||||| |||||| |||||||||
Sbjct 1567 AGGAAA-TCTCTC-GTTTTGCAGCCTTGTCAGATGCACTTAGTAGATAACAACATTCCAT 1624
Query 1043 TGACGTTAGTA-GACACAACTCAAAACGGCGAGGTT 1077
||| | | | | | |||||||||||||||||||||
Sbjct 1625 TGATGGT-GCAAGGTACAACTCAAAACGGCGAGGTT 1659
> Ahg358451 jgi|Araly1|358451|fgenesh1_pg.C_scaffold_8002238
Length=978
Score = 806 bits (436), Expect = 0.0
Identities = 573/638 (90%), Gaps = 14/638 (2%)
Strand=Plus/Plus
Query 74 gaagaaaaagaagaagaagaagacaaagaggagaagatttttttGTGGCACCGGAGATTC 133
||||| ||||| ||||||||||| |||||||| || ||| || || |||||||||
Sbjct 8 GAAGAGGAAGAAAAAGAAGAAGACGAAGAGGAGGCGA---TTTGGTAGCGCCGGAGATTA 64
Query 134 CTTTGGATCTACTGATCGAGATTCTGACTAGATTGCCT-CATAAATCGCTTATGAGGTTC 192
|||||||||| | ||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct 65 CTTTGGATCTCCAGATCGAGATTCTGACTAGATTGCCTGC-TAAATCGCTGATGAGGTTC 123
Query 193 AAGTGCGTTTCAAAGC-AGTGGTCTTCTCTTATCCGTTCCCGATTTTTTAGCAACCGTTA 251
|||||||| ||||||| | || ||||||||||||| |||||||| |||||||||| ||||
Sbjct 124 AAGTGCGTCTCAAAGCTA-TGTTCTTCTCTTATCCTTTCCCGATATTTTAGCAACTGTTA 182
Query 252 TCTTACGGTTGCATCTCCACTGCGACCA-CA--TCGTCTATACATTAGTTTGGTGGACCA 308
||||||||| |||||||||||||||||| || ||| |||||||| ||||||||||||||
Sbjct 183 TCTTACGGTCGCATCTCCACTGCGACCACCACCTCGCCTATACATGAGTTTGGTGGACCA 242
Query 309 CAAGTGTGA-TTCAAGGGAGGTCTGCCACAGCCCCCGCGAGTCTGTACTGCTATCATTCT 367
| ||||| | ||||| | |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 243 CGAGTGT-AGTTCAACGAAGGTCTGCCACAACCCCCGCGAGTCTGTACTGCTATCATTAT 301
Query 368 CATCGCCTTCTAGTTTCGACCAAGATTTGACGACCATGCAAGGGATGGGAGGACTACAT- 426
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 302 CATCATCTTCTAGTTTCGACCAAGATTTGACGACCATGCAAGGGATGGGAGGACG-CAAC 360
Query 427 ATGGTGACTCTTCGTGGCTTGATTTTATACATTGTTTGCGGAAAAGCGTGTCTCTATAAT 486
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 ATGGTGATTCTTCGTGGCTTGATTTTATACATTGTTTGCGGAAAAGCGTGTATCTATAAT 420
Query 487 CCCACCACCAGACAGAGCGTAACCTTACCCGCCATCAAATTCAACATTTTTGTCCAAGGA 546
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 421 CCCACCACCAGACAGAGCGTAACCTTACCCGCCATCAAATTCAACATCTTTATTCAAGGA 480
Query 547 AACGAACATAGTCTCCTCTACTTCTTGGGGCACGATCCTGTTCTTGATCAATACAAAGTA 606
|| || ||| || | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 AATGACCATTGTGTACTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACAAAGTA 540
Query 607 GTTTGCACTTTTGTGTCATCATCCTCACAAGATTTGGAAACGATAATCTCGGAGCATTGG 666
||||| | ||||||||||||||| |||||||||||||| | ||||| || ||||||||||
Sbjct 541 GTTTGTAATTTTGTGTCATCATCTTCACAAGATTTGGACATGATAAACTTGGAGCATTGG 600
Query 667 GTCTTCGTACTGGAAGTTGGAGGTTCTTGGAAAAGAAT 704
||||| ||||| |||||||||| |||||||||||||||
Sbjct 601 GTCTTTGTACTAGAAGTTGGAGATTCTTGGAAAAGAAT 638
Score = 431 bits (233), Expect = 6e-120
Identities = 288/314 (92%), Gaps = 5/314 (2%)
Strand=Plus/Plus
Query 780 TAG-TATGTTTCAGGATATCGTTGTCACCTTTGACGTTAGGTCTGAAGAATTTAACATTA 838
||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 638 TAGATATGTTTGAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAA 697
Query 839 TCCAAGCGCCTCTTGTGTTGTCTGCATATGTTGACTCTCTGGATTTTATAGAGTACGGTG 898
||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 698 TCCAAGCGCCTCTTGTGGTGTCTGCATATGTTGGCTCTCTGGGTTTTATAGAGTATGGTG 757
Query 899 GGAAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTAGACTTATGGG 958
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 758 GGAAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTGGACTTATGGG 817
Query 959 TCTTGGAAAATGCTGGAAACTGGTCGAGGACAGT-TTTGAGTTTGCAGCCTTGTCAGCTG 1017
||||||||||||||||||||||||||| || | | ||||||||||||||||| |||| ||
Sbjct 818 TCTTGGAAAATGCTGGAAACTGGTCGATGAGA-TCTTTGAGTTTGCAGCCTTCTCAGTTG 876
Query 1018 CATTTAGTTGATAACGACATTCCATT-GACGTTAGTAGACACAACTCAAAACGGCGAGGT 1076
|||||||| |||||||||||| ||| |||| | | || ||||||||||||||||||||
Sbjct 877 CATTTAGTCGATAACGACATTG-ATTTGACGGTGGAAGGTACAACTCAAAACGGCGAGGT 935
Query 1077 TGTCTTGGTACCAA 1090
| ||||||||||||
Sbjct 936 TATCTTGGTACCAA 949
> Ahg951049 jgi|Araly1|951049|scaffold_802936.1
Length=637
Score = 804 bits (435), Expect = 0.0
Identities = 511/548 (93%), Gaps = 3/548 (1%)
Strand=Plus/Plus
Query 498 ACAGAGCGTAACCTTACCCGCCATCAAATTCAACATTTTTGTCCAAGGAAACGAACATAG 557
||| |||||||||||||||||||||||||||||||| ||||| |||||||| || |||||
Sbjct 92 ACAAAGCGTAACCTTACCCGCCATCAAATTCAACATCTTTGTTCAAGGAAATGATCATAG 151
Query 558 TCTCCTCTACTTCTTGGGGCACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTTT 617
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 152 TGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGTAATTT 211
Query 618 TGTGTCATCATCCTCACAAGATTTGGAAACGATAATCTCGGAGCATTGGGTCTTCGTACT 677
|||||||||||| |||||||||||||| | ||||| || ||||||||||||||| |||||
Sbjct 212 TGTGTCATCATCTTCACAAGATTTGGACATGATAAACTTGGAGCATTGGGTCTTTGTACT 271
Query 678 GGAAGTTGGAGGTTCTTGGAAAAGAATTGAGTTTGATCAACCTCATACT-CCTACGAGAT 736
|||||||||| ||||||||||||||| ||||||||||||||||||| | |||| |||
Sbjct 272 AGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTCATA-TATCTACAAGAC 330
Query 737 CTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACTAGTATGTTTCAGGATA 796
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 331 CTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACTAGTATGTTTGAGGATA 390
Query 797 TCGTTGTCACCTTTGACGTTAGGTCTGAAGAATTTAACATTATCCAAGCGCCTCTTGTGT 856
||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 391 TCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATCCAAGCGCCTCTTGTGG 450
Query 857 TGTCTGCATATGTTGACTCTCTGGATTTTATAGAGTACGGTGGGAAACCAGCTATTTTTT 916
||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 451 TGTCTGCATATGTTGGCTCTCTGGGTTTTATAGAGTATGGTGGGAAACCAGCTATTTTTT 510
Query 917 ATCATACTAGTCTTAAAGAAAACGGTTTGGTAGACTTATGGGTCTTGGAAAATGCTGGAA 976
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 511 ATCATACTAGTCTTAAAGAAAACGGTTTGGTGGACTTATGGGTCTTGGAAAATGCTGGAA 570
Query 977 ACTGGTCGAGGACAGTTTTGAGTTTGCAGCCTTGTCAGCTGCATTTAGTTGATAACGACA 1036
|||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 571 ACTGGTCGAGGAAAGCTTTGAGTTTGCAGCCTTCTCAGCTGC-TTTAGTTGATAACGACA 629
Query 1037 TTCCATTG 1044
||| ||||
Sbjct 630 TTCTATTG 637
> Ahg358465 jgi|Araly1|358465|fgenesh1_pg.C_scaffold_8002252
Length=1428
Score = 710 bits (384), Expect = 0.0
Identities = 789/973 (81%), Gaps = 73/973 (8%)
Strand=Plus/Plus
Query 121 GCACCGGAGATTCCTTTGGATCTACTGATCGAGATTCTGACTAGATTGCCT-CATAAATC 179
||| ||||||||||||||||||| | |||||||||||||| |||||||||| | ||||||
Sbjct 31 GCATCGGAGATTCCTTTGGATCTCCAGATCGAGATTCTGATTAGATTGCCTGC-TAAATC 89
Query 180 GCTTATGAGGTTCAAGTGCGTTTCAAAGCAGTGGTCTTCTCTTATCCGTTCCCGATTTTT 239
||| ||||||||||||||||||||||||| |||| |||||||||||||| |||| |||
Sbjct 90 GCTGATGAGGTTCAAGTGCGTTTCAAAGCTCTGGTTTTCTCTTATCCGTTGTCGATATTT 149
Query 240 TAGCAACCGTTATCTTACGGTTGCATCTCCACTGCGACCACATCGTCTATACATTAGTTT 299
|||||| |||||||||||||| || || |||| |||| ||| |||||||||||| |||||
Sbjct 150 TAGCAATCGTTATCTTACGGTGGCTTCCCCACCGCGAGCACCTCGTCTATACATGAGTTT 209
Query 300 GGTGGACCACA---AGTGTGATTCAAGGGAGGTCTGCCACAGCCCCCGCGAGTCTGTACT 356
||||||||||| ||||| |||||| ||| |||||| | | ||| |||||||||||| |
Sbjct 210 GGTGGACCACATCCAGTGTAATTCAATGGAAGTCTGCTATAACCCTCGCGAGTCTGTATT 269
Query 357 GCTATCA-T-TC-TCATCG-C-----CT--T-C-TAG--TTTCGACCAAGATTTGACGAC 401
||||||| | || |||||| | || | | || |||| ||||||||||||| |
Sbjct 270 GCTATCATTATCATCATCGTCTAGTACTGATGCAAAGTCTTTCCACCAAGATTTGAC-A- 327
Query 402 CATGCAAGGGATGGGAGGACTAC-ATATGGTGACTCTTCGTGGCTTGATTTTATACATTG 460
|||| |||||||||||||| | | ||| ||| |||||| ||||||||| |||||||||
Sbjct 328 -ATGCCAGGGATGGGAGGAC-GCAACATGATGATTCTTCGCGGCTTGATTCTATACATTG 385
Query 461 TTTGCGGAAAAGCGTGTCTCTATAATCCCACCACCAGACAGA-GCGTAACCTTACCCGCC 519
||||| |||| |||||| |||||||||||||||||||||| | | |||||||||||||||
Sbjct 386 TTTGCAGAAAGGCGTGTATCTATAATCCCACCACCAGACA-ATGTGTAACCTTACCCGCC 444
Query 520 ATCAAATTCAACATTTTTGTC-CAAGGAA-ACGAACAT---AGTCTCCTCTACTTCTTGG 574
|| ||| ||||||||||| | ||| ||| | | ||| ||| |||||||||| || |
Sbjct 445 GTCCAATCCAACATTTTTG-CTCAA-GAAGATTATCATAAGAGTGTCCTCTACTTTTTAG 502
Query 575 GGCACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTTTTGTGTCA-TCATCCTCA 633
| ||||||||||||||||||||||||||||||||||||||| ||| || | |||||||
Sbjct 503 GACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTGTTG---CAGT-ATCCTCA 558
Query 634 CAA-GATTTGGAA-ACGATAATCTCGGAGCATTGGGTCTTCGTACTGGAAGTTGGAGGTT 691
|| | ||| || | ||||| ||| |||||||||||||||||||| ||| |||||||
Sbjct 559 AAAAGGTTT--AAGAGGATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCCGGAGGTT 616
Query 692 CTTGGAAAAGAATTGAGTTTGATCAACCTCATACTCCTACGA-GATCT-GGACTGTGCAT 749
| |||||||||||||||||||||| ||||||| |||| | | || || |||||||||||
Sbjct 617 CGTGGAAAAGAATTGAGTTTGATCTACCTCATTGTCCTGC-ACGA-CTAGGACTGTGCAT 674
Query 750 CGGTGGAGTTATATATTATCTTG-CTTTCACTAGTATGTTTCAG-GATATCGTTGTCACC 807
| ||||| ||||||| | ||| ||| | || |||||| | || |||||| ||||||
Sbjct 675 CAACGGAGTCATATATTTT-TTGGCTTCCGCTTGTATGTCT-AGCGATATCCTTGTCAGT 732
Query 808 TTTGACGTTAGGTCTGAAGAATTTAACATT-ATCCAAGCG-CCTCTTGT-GTTGTCTGCA 864
||||| |||| ||||||||| || || || ||||||| | |||| ||| | |||||||
Sbjct 733 TTTGATGTTATGTCTGAAGAGTTCAA-ATGGATCCAAG-GACCTCCTGTCGC-GTCTGCA 789
Query 865 TATGTTGACTCTCTGGATTTTATAGAGTA-CGGTGGGAAACCAGCTATTTTTTATCATAC 923
| | | | | ||| |||||||||||| | ||| |||||| || ||||| ||||| |
Sbjct 790 TTTAA-GCC-CA-TGGGTTTTATAGAGTATCT-TGGAAAACCATCTGTTTTTGATCATTC 845
Query 924 T-AGTCTTAAA-GAAAACGGTTTGGTAGACTTATGGGTCTTGGAAAATGCTGGAAACTGG 981
| ||||||| | ||| |||| || |||||||||||||||||| |||||||||| |||
Sbjct 846 CCA-TCTTAAACGCAAA-GGTTCCGTGGACTTATGGGTCTTGGAAGATGCTGGAAAATGG 903
Query 982 TCGAGGACAGTTT-TGAGTTT-GCAGCCTTGTCAGCTGCATTTAGTTGATAACGACATTC 1039
|||| || | | || |||| ||||||||||||| |||||||||||||||| || |||
Sbjct 904 TCGAAGAAA-TCCCTG-GTTTTGCAGCCTTGTCAGATGCATTTAGTTGATAA-GAAATTA 960
Query 1040 -CATTGACG-TTA 1050
|||| ||| |||
Sbjct 961 TCATTCACGGTTA 973
Score = 669 bits (362), Expect = 0.0
Identities = 426/457 (93%), Gaps = 3/457 (1%)
Strand=Plus/Plus
Query 542 AAGGAAACGAACATAGTCTCCTCTACTTCTTGGGGCACGATCCTGTTCTTGATCAATACA 601
||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 974 AAGGAAATGATCATAGTGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACA 1033
Query 602 AAGTAGTTTGCACTTTTGTGTCATCATCCTCACAAGATTTGGAAACGATAATCTCGGAGC 661
|||||||||| | ||||||||||||||| |||||||||||||| | ||||| || |||||
Sbjct 1034 AAGTAGTTTGTAATTTTGTGTCATCATCTTCACAAGATTTGGACATGATAAACTTGGAGC 1093
Query 662 ATTGGGTCTTCGTACTGGAAGTTGGAGGTTCTTGGAAAAGAATTGAGTTTGATCAACCTC 721
|||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1094 ATTGGGTCTTCGTACTAGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTC 1153
Query 722 ATACT-CCTACGAGATCTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACT 780
||| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 ATA-TATCTACAAGACCTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACT 1212
Query 781 AGTATGTTTCAGGATATCGTTGTCACCTTTGACGTTAGGTCTGAAGAATTTAACATTATC 840
||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 1213 AGTATGTTTGAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATC 1272
Query 841 CAAGCGCCTCTTGTGTTGTCTGCATATGTTGACTCTCTGGATTTTATAGAGTACGGTGGG 900
||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 1273 CAAGCGCCTCTTGTGGTGTCTGCATATGTTGGCTCTCTGGGTTTTATAGAGTATGGTGGG 1332
Query 901 AAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTAGACTTATGGGTC 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1333 AAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTGGACTTATGGGTC 1392
Query 961 TTGGAAAATGCTGGAAACTGGTCGAGGACAGTTTTGA 997
||||||| |||||||||||||||||||| || |||||
Sbjct 1393 TTGGAAA-TGCTGGAAACTGGTCGAGGAAAGCTTTGA 1428
> Ahg918030 jgi|Araly1|918030|Al_scaffold_0008_2781
Length=1491
Score = 492 bits (266), Expect = 3e-138
Identities = 618/777 (80%), Gaps = 68/777 (9%)
Strand=Plus/Plus
Query 313 TGTGATTCAAGGGAGGTCTGCCACAGCCCCCGCGAGTCTGTACTGCTATCA-T-TC-TCA 369
||| |||||| ||| |||||| | | ||| ||||||||||| |||||||| | || |||
Sbjct 649 TGTAATTCAATGGAAGTCTGCTATAACCCTTGCGAGTCTGTATTGCTATCATTATCATCA 708
Query 370 TCG-C-----CT--T-C-TAG--TTTCGACCAAGATTTGACGACCATGCAAGGGATGGGA 417
||| | || | | || |||| ||||||||||||| | |||| ||||||||||
Sbjct 709 TCGTCTAGTACTGATGCAAAGTCTTTCCACCAAGATTTGAC-A--ATGCCAGGGATGGGA 765
Query 418 GGACTAC-ATATGGTGACTCTTCGTGGCTTGATTTTATACATTGTTTGCGGAAAAGCGTG 476
|||| || | ||| ||| |||||| ||||||||| |||||||||||||| |||| |||||
Sbjct 766 GGAC-ACAACATGATGATTCTTCGCGGCTTGATTCTATACATTGTTTGCAGAAAGGCGTG 824
Query 477 TCTCTATAATCCCACCACCAGACAGA-GCGTAACCTTACCCGCCATCAAATTCAACATTT 535
| |||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||
Sbjct 825 TATCTATAATCCCACCACCAGACA-ATGCGTAACCTTACCCGCCGTCAAATCCAACATTT 883
Query 536 TTGTC-CAAGGAA-ACGAAC---ATAGTCTCCTCTACTTCTTGGGGCACGATCCTGTTCT 590
||| | ||| ||| || | | | ||| |||||||||| || || ||||||||||||||
Sbjct 884 TTG-CTCAA-GAAGACTATCGTAAGAGTGTCCTCTACTTTTTAGGACACGATCCTGTTCT 941
Query 591 TGATCAATACAAAGTAGTTTGCACTTTTGTGTCA-TCATCCTCACAA-GATTTGGAA-AC 647
||||||||||||||||||||||||| ||| || | ||||||| || | ||| || |
Sbjct 942 TGATCAATACAAAGTAGTTTGCACTGTTG---CAGT-ATCCTCAAAAAGGTTT--AAGAG 995
Query 648 GATAATCTCGGAGCATTGGGTCTTCGTACTGGAAGTTGGAGGTTCTTGGAAAAGAATTGA 707
||||| ||| ||||||||||||||||| || ||| |||||||| ||||||||||||||
Sbjct 996 GATAACCTCAGAGCATTGGGTCTTCGTCCTAGAACCCGGAGGTTCGTGGAAAAGAATTGA 1055
Query 708 GTTTGATCAACCTCATACTCCTACGA-GATCT-GGACTGTGCATCGGTGGAGTTATATAT 765
|||||||| ||||||| |||| | | || || |||||||||||| ||||| ||||||
Sbjct 1056 GTTTGATCTACCTCATTGTCCTGC-ACGA-CTAGGACTGTGCATCAACGGAGTCATATAT 1113
Query 766 TATCTTG-CTTTCACTAGTATGTTTCAG-GATATCGTTGTCACCTTTGACGTTAGGTCTG 823
| | ||| ||| | || |||||| | || |||||| |||||| ||||| |||| |||||
Sbjct 1114 TTT-TTGGCTTCCGCTTGTATGTCT-AGCGATATCCTTGTCAGTTTTGATGTTATGTCTG 1171
Query 824 AAGAATTTAACATT-ATCCAAGCG-CCTCTTGT-GTTGTCTGCATATGTTGACTCTCTGG 880
|||| || || || ||||||| | |||| ||| | |||||||| | | | | |||
Sbjct 1172 AAGAGTTCAA-ATGGATCCAAG-GACCTCCTGTCGC-GTCTGCATTTAA-GCC-CA-TGG 1225
Query 881 ATTTTATAGAGTA-CGGTGGGAAACCAGCTATTTTTTATCATACT-AGTCTTAAA-GAAA 937
|||||||||||| | ||| |||||| || ||||| ||||| | | ||||||| | ||
Sbjct 1226 GTTTTATAGAGTATCT-TGGAAAACCATCTGTTTTTGATCATTCCCA-TCTTAAACGCAA 1283
Query 938 ACGGTTTGGTAGACTTATGGGTCTTGGAAAATGCTGGAAACTGGTCGAGGACAGTTT-TG 996
| |||| || |||||||||||||||||| |||||||||| ||||||| || | | ||
Sbjct 1284 A-GGTTCCGTGGACTTATGGGTCTTGGAAGATGCTGGAAAATGGTCGAAGAAA-TCCCTG 1341
Query 997 AGTTT-GCAGCCTTGTCAGCTGCATTTAGTTGATAACGACATTC-CATTGACG-TTA 1050
|||| ||||||||||||| |||||||||||||||| || ||| |||| ||| |||
Sbjct 1342 -GTTTTGCAGCCTTGTCAGATGCATTTAGTTGATAA-GAAATTATCATTCACGGTTA 1396
Score = 69.4 bits (37), Expect = 6e-11
Identities = 51/57 (89%), Gaps = 3/57 (5%)
Strand=Plus/Plus
Query 16 GCTCTGATTTCATCTTTTCAATGGAAGAAGAGGTCTTCAAAGGCGATTATgagaaga 72
||||||||||||||||||||||||||||| | ||| |||||||| | |||||||||
Sbjct 175 GCTCTGATTTCATCTTTTCAATGGAAGAAAAAGTCGTCAAAGGC-A--ATGAGAAGA 228
> Ahg951054 jgi|Araly1|951054|scaffold_802941.1
Length=465
Score = 396 bits (214), Expect = 2e-109
Identities = 307/350 (88%), Gaps = 14/350 (4%)
Strand=Plus/Plus
Query 39 GAAGAAGAGGTCTTCAAAGGCGATTATgagaagaggaa-gaaaaagaagaagaagaagac 97
|||||||||||||||||||||||| | ||||||||||| | ||||| |||||||||||
Sbjct 1 GAAGAAGAGGTCTTCAAAGGCGATGACGAGAAGAGGAACG-CGAAGAAAAAGAAGAAGAC 59
Query 98 aaagaggagaagatttttttGTGGCACCGGAGATTCCTTTGGATCTACTGATCGAGATTC 157
|||||||||| || |||||| || ||||||||| |||||||||| | |||||||||||
Sbjct 60 AAAGAGGAGACGA---TTTTGTAGCGCCGGAGATTACTTTGGATCTCCAGATCGAGATTC 116
Query 158 TGACTAGATTGCCT-CATAAATCGCTTATGAGGTTCAAGTGCGTTTCAAAGC-AGTGGTC 215
|||||||||||||| | |||||||| ||||||||||||||||| ||||||| | |||||
Sbjct 117 TGACTAGATTGCCTGC-CAAATCGCTGATGAGGTTCAAGTGCGTCTCAAAGCTA-TGGTC 174
Query 216 TTCTCTTATCCGTTCCCGATTTTTTAGCAACCGTTATCTTACGGTTGCATCTCCACTGCG 275
||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 175 TTCTCTTATCCTTTCCCGATATTTTAGCAACTGTTATCTTACGGTTGCATCTCCACTGCG 234
Query 276 ACCAC-A--TCGTCTATACATTAGTTTGGTGGACCACAAGTGT-GATTCAAGGGAGGTCT 331
||||| | |||||||||||| | ||||||||||||| ||||| | ||||| ||||||||
Sbjct 235 ACCACCACCTCGTCTATACATGACTTTGGTGGACCACGAGTGTAG-TTCAACGGAGGTCT 293
Query 332 GCCACAGCCCCCGCGAGTCTGTACTGCTATCATTCTCATCGCCTTCTAGT 381
|||||| ||||| ||||||| |||||||||||| ||||| | ||||||
Sbjct 294 GCCACAACCCCCATGAGTCTGCACTGCTATCATTATCATCATCGTCTAGT 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5