BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62530.1
Length=2575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496432 jgi|Araly1|496432|fgenesh2_kg.8__2248__AT5G62530.1 3265 0.0
> Ahg496432 jgi|Araly1|496432|fgenesh2_kg.8__2248__AT5G62530.1
Length=2514
Score = 3265 bits (1768), Expect = 0.0
Identities = 1980/2079 (95%), Gaps = 28/2079 (1%)
Strand=Plus/Plus
Query 1 GGGGAAAAACATTTAATTCTTTAAT-AAGCTGCTAAACACAAATCACTCGAGAATTCGCT 59
|||| |||||||| ||||||||||| ||||| |||||||||||||||| || |
Sbjct 1 GGGG-AAAACATTAAATTCTTTAATAAAGCTAATAAACACAAATCACTC-----TT---T 51
Query 60 ATTTTATCACCAATCTTCTTGAATCCTCTCATCCAATCGTCTGATTCTCATCTTTCTCCG 119
| | | |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 52 A---T-T-ACCAATCTTCTTGAATCCTCTCCTCCAATCGTCTGATTCTCATCTTGCTCCG 106
Query 120 TTACTTGTGGATCTTACGCAATGTATAGAGTTTTTGCGAGCCGAGCACTGAGAGCTAAGT 179
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TTTCTTCTGGATTTTACGCAATGTATAGAGTTTTTGCGAGCCGAGCACTGAGAGCTAAGT 166
Query 180 CTCTCTGTGACAAATCATCCACCTCGCTTGCTTCTTTGACTCTCTCCAGATTGAATCATT 239
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 167 CTCTCTGTGAAAAATCATCGACCTCGCTTGCTTCTTTGACTCTCTCTAGATTGAATCATT 226
Query 240 CCATACCTTTTGCTACCGTAGATGCCGAGGAGCTCTCTGGTGCTCATCCTGCTGAAGTAC 299
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 227 CAATACCTTTTGCTACCGTAGATGCCGAGGAGCTATCTGGTGCTCATCCTGCTGAAGTAC 286
Query 300 AGAGCTTTGTGCAGGGAAAGTGGATAGGATCGTCAAATCATAACACGCTTCTAGATCCTC 359
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 287 AGAGCTTTGTGCAGGGAAAGTGGATAGGATCTTCAAATCATAATACGCTTCTAGATCCTC 346
Query 360 TAAATGGAGAACCGTTT-ATCAAAGTTGCGGAAGTGGATGAATCAGGAACTCAGCCATTT 418
||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 347 TAAATGGAGAACC-TTTCATTAAAGTTGCTGAAGTGGATGAATCAGGAACTCAGCCATTT 405
Query 419 GTGGACAGCTTATCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GTGGACAGCTTATCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAG 465
Query 479 AGATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCTCGCCTTACCTAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 466 AGATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCTCGCCTTGCCTAAG 525
Query 539 GTTGCTGATTTCTTCGCGAGGTTAATTCAAAGGGTTGCTCCAAAGAGTTACCAGCAAGCT 598
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 526 GTAGCTGATTTCTTCGCGAGGTTAATTCAAAGAGTTGCTCCAAAGAGTTACCAGCAAGCC 585
Query 599 GCTGGAGAAGTCTTTGTCACACGGAAGTTTTTAGAAAACTTTTGTGGTGATCAGGTGCGG 658
|||||||||||||| |||||||| || |||||||| |||||||| |||||||||||||||
Sbjct 586 GCTGGAGAAGTCTTCGTCACACGAAAATTTTTAGAGAACTTTTGCGGTGATCAGGTGCGG 645
Query 659 TTCCTGGCACGGTCTTTTGCAATCCCTGGGAATCATCTTGGGCAGCAAAGTCATGGTTAC 718
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 646 TTCCTAGCTCGGTCTTTTGCAATCCCTGGAAATCATCTTGGGCAGCAAAGTCATGGTTAC 705
Query 719 CGTTGGCCTTATGGTCCTGTAACGATTGTTACACCATTTAATTTTCCACTTGAGATTCCA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CGTTGGCCTTATGGTCCTGTAACGATTGTTACACCATTTAATTTTCCACTTGAGATTCCA 765
Query 779 CTACTTCAGTTGATGGGGGCATTATACATGGGTAACAAACCTCTTCTTAAAGTGGACAGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 766 CTACTTCAGTTGATGGGGGCATTATACATGGGTAACAAACCTCTTCTTAAAGTTGACAGC 825
Query 839 AAGGTAAGCATTGTTATGGAGCAAATGATGCGATTGCTCCACTATTGTGGTTTACCCGCT 898
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 826 AAGGTAAGCATTGTAATGGAGCAAATGATGCGACTGCTCCATTATTGTGGTTTACCCGCT 885
Query 899 GAAGATGTGGACTTTATAAATTCTGATGGGAAGACAATGAACAAGATATTGTTAGAGGCG 958
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GAAGATGTTGACTTTATAAATTCTGATGGGAAGACAATGAACAAGATATTGTTAGAGGCG 945
Query 959 AACCCACGGATGACCCTCTTCACGGGTAGTTCTAGAGTAGCTGAAAAGTTGGCACTTGAC 1018
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 946 AATCCACGGATGACCCTCTTCACGGGTAGTTCTAGAGTAGCCGAAAAGTTGGCACTTGAC 1005
Query 1019 CTTAAGGGTCGAATCAGATTGGAAGATGCTGGATTTGATTGGAAAGTCTTAGGACCAGAT 1078
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1006 CTTAAAGGTCGAATCAGATTGGAAGATGCTGGGTTTGATTGGAAAGTCTTAGGACCAGAT 1065
Query 1079 GTTCAGGAGGTTGATTATGTTGCATGGCAATGTGATCAAGATGCATACGCGTGCAGTGGA 1138
||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1066 GTTCAGGAGGTTGATTACGTTGCCTGGCAATGCGATCAAGATGCATACGCTTGCAGTGGA 1125
Query 1139 CAGAAGTGTTCTGCACAGTCTATGCTTTTTGTTCATGAGAACTGGTCAAAAACCCCTCTT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CAGAAGTGTTCTGCACAGTCTATGCTTTTTGTTCATGAGAACTGGTCAAAAACCCCTCTT 1185
Query 1199 GTTTCCAAATTAAAAGAACTAGCGGAAAGACGCAAACTGGAAGACTTAACCATTGGTCCT 1258
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1186 GTTTCCAAATTAAAAGAACTAGCGGAAAGACGCAAACTGGAAGACTTAACAATTGGTCCT 1245
Query 1259 GTCCTTACATTTACAACTGAGGCAATGTTGGAGCACATGGAGAATCTGCTTCAGATTCCT 1318
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GTCCTCACATTTACAACTGAGGCAATGTTGGAGCACATGGAGAATCTGCTTCAGATTCCT 1305
Query 1319 GGCTCAAAGCTACTCTTTGGTGGCAAGGAATTGAAGAATCATTCGATTCCTTCAATCTAC 1378
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1306 GGCTCAAAGCTACTTTTTGGTGGCAAGGAATTGAAGAATCATTCGATTCCTTCTATCTAT 1365
Query 1379 GGAGCTTTGGAGCCAACTGCAGTTTATGTTCCCATTGAAGAAATCTTGAAGGATAATAAA 1438
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1366 GGAGCTTTGGAGCCTACTGCAGTTTATGTTCCAATTGAAGAAATCTTGAAGGATAGTAAA 1425
Query 1439 ACCTACGAACTCGTCACCAAAGAAATCTTTGGACCATTTCAGATTGTAACGGAATACAAA 1498
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1426 ACCTACGAACTCGTCACCAAAGAAATCTTTGGACCATTTCAGATAGTAACGGAATACAAA 1485
Query 1499 AAGGATCAACTTCCTCTAGTGTTGGAAGCATTGGAGAGGATGCACGCTCATCTAACTGCA 1558
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1486 AAGGATCAACTTCCTCTAGTGTTGGAAGCATTGGAGAGGATGCATGCTCATTTAACTGCA 1545
Query 1559 GCTGTTGTTTCAAACGATCCCATCTTTCTTCAGGAAGTAATAGGGAACTCAGTGAATGGG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 GCTGTTGTTTCAAACGATCCCATCTTTCTTCAGGAAGTAATAGGGAACTCAGTGAATGGG 1605
Query 1619 ACTACATATGCTGGACTAAGAGGAAGAACAACTGGAGCTCCTCAGAATCACTGGTTTGGA 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 ACTACATATGCTGGACTAAGAGGAAGAACAACTGGAGCTCCTCAGAATCACTGGTTTGGA 1665
Query 1679 CCTGCGGGGGACCCGAGAGGGGCCGGGATAGGGACACCAGAGGCTATAAAGCTGGTTTGG 1738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1666 CCTGCGGGGGACCCGAGAGGGGCCGGGATAGGGACACCAGAGGCTATAAAGCTGGTCTGG 1725
Query 1739 TCATGCCACAGAGAAGTCATCTACGATTATGGTCCGGTTCCACAAGGTTGGGAACTTCCT 1798
|||||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||
Sbjct 1726 TCATGCCACAGAGAGGTCATCTATGACTATGGTCCCGTTCCACAAGGTTGGGAACTCCCT 1785
Query 1799 CCATCTACTTAGAAGTGGTGTGTCCACTAATAATTAATAAACTAAGATCTTAGTGTGCTG 1858
||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 1786 CCATCTACTTAGAAGTGGTATGTCCACTAATAATAAATAAACTAAGATCTTAGTTTGCTG 1845
Query 1859 TTGCATCAAATAAATATGAGTTTTGTAGTTTTATCTCTACGAGTAGTTTCCGTGTGAGGG 1918
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1846 TTGCATCGAATAAATATGAGTTTTGTAGTTT-ATCTCTACGAGTAGTTTCCGTGTGAGGG 1904
Query 1919 AATAAGAGCTTGAAACATGAAGTTTTCAACGACGTTGACTTAGTCAAGGGGTAGAGGGAT 1978
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 AATAAGAGCTTTAAACATGAAGTTTTCAACGACGTTGACTTAGTCAAGGGGTAGAGGGAT 1964
Query 1979 TAAGACAGAGAGAGAACTATTGTAAAACTCAGTCCACCAGA-AAT--TTT--CTTCAGCT 2033
||||| | |||||| ||||||| |||||||| | || | ||| ||| ||| ||||
Sbjct 1965 TAAGA-A-AGAGAG--CTATTGTGAAACTCAGAGGAACA-ATAATGGTTTTTCTTTAGCT 2019
Query 2034 CAAAGCCAGACAATAATACAAATGTTTTTGAAAGAAGAA 2072
|||||||||||||| ||||||||||||||||||||||||
Sbjct 2020 CAAAGCCAGACAATGATACAAATGTTTTTGAAAGAAGAA 2058
Score = 664 bits (359), Expect = 0.0
Identities = 431/464 (93%), Gaps = 12/464 (3%)
Strand=Plus/Plus
Query 2117 ATTAATAATGTTGCTAAGACCCTAATCTAATCGATCTTAAATAATCTAATGAACAGtttt 2176
||||||||||| ||||| |||||||||| | ||||||||||||||||| |||||| ||||
Sbjct 2058 ATTAATAATGTAGCTAATACCCTAATCTGACCGATCTTAAATAATCTATTGAACAATTTT 2117
Query 2177 ttttCATCACTATCATGGGAAA-ACAATAGAAAGGGACTCTACCAGTCCTGATCATTTTG 2235
|||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||
Sbjct 2118 TTTTCATCACTATCATGGGAAATA-AATAAAAAGGGACTATACCAGTCCTGATCATTTTG 2176
Query 2236 GAGTTGGTAAACAGACAAATACAACCATGGTGATTGTGTCCTTGAAACAAAAACGCCAAA 2295
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 TTG-TGGTAAACAGACAAATACAACCATGGTGATTGTGTCCTTGAAACAAAAACGCCAAA 2235
Query 2296 GTGATCTGCAATGGAGATTTAGTGTTGTACTTTATGTCCACAAGCTTTGATGATGTGAAC 2355
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2236 GTGATCTGCAATGGAGATTTAGTGTTGTACTTTATGTCCAAAAGCTTTGATGATGTGAAC 2295
Query 2356 TAGTAACTTGTCTCCGGTTATGCTTCTGACTCGTTGGATTAGTTCGCTCCGTGTAATTCT 2415
||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 2296 TAGTAACTTGTCTCCGGTTATACTTCTGACTTGTTGGATTAGTTCGCTCCGCGTAATTCT 2355
Query 2416 CCTATTCTGTTAAATCCAAAGGAAAG-CAACAATTAGAATGTGAAATGAAATCACCTCAA 2474
||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 2356 CCTGTTCTGTTAAATCCAAAGGAAAATCAACAATTAGAATGTGAAAT-----CACCTGAA 2410
Query 2475 AAGATAATTGAAGAGGAAACAAAC-a-aaaaa-aaaCACTTACTTGTTGATCTTTGTAAT 2531
|||||||| ||||| ||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 2411 AAGATAATGGAAGAAGAAACAAACCAGAAAAACAAACACTTACTTGTTGATCTTTGTAAT 2470
Query 2532 GTTTCTGAATGACAAGTATTTGAGAAGGAGGTAGAAACTTGGAC 2575
|||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2471 GTTTTTGAATGACAAGTATTTGAGAAGGAGGTAGAAACTTCGAC 2514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97092034505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5