BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62540.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951033 jgi|Araly1|951033|scaffold_802920.1 798 0.0
> Ahg951033 jgi|Araly1|951033|scaffold_802920.1
Length=494
Score = 798 bits (432), Expect = 0.0
Identities = 471/489 (96%), Gaps = 5/489 (1%)
Strand=Plus/Plus
Query 259 TTTCCAACAGCAATGACAACTCCAGCAAAAAAGAGACTGATGTGGGATTTCAAGAGACTG 318
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 9 TTTCCAACAGCAATGACAACTCCAGCAAGAAAGAGACTGATGTGGGATTTCAAGAGACTG 68
Query 319 CAGAAAGATCCTCCTGTGGGAATAAGTGGAGCTCCACAAGATAACAATATCATGCATTGG 378
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 69 CAGAAAGATCCTCCTGTGGGAATTAGTGGAGCTCCACAAGATAACAATATCATGCATTGG 128
Query 379 AATGCTCTCATCTTTGGACCTGAGGACACTCCATGGGATGGAGGTACTTTCAAGTTGACT 438
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 129 AATGCTGTCATCTTTGGACCTGATGACACTCCATGGGATGGAGGTACTTTCAAGTTGACT 188
Query 439 CTTCACTTCACCGAGGATTATCCGAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATG 498
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 189 CTTCAGTTCACCGAGGATTACCCGAACAAACCCCCTATTGTTCGGTTTGTTTCACGGATG 248
Query 499 TTTCATCCAAACATTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGG 558
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 249 TTTCATCCAAACATTTATGCTGATGGAAGCATTTGCTTGGATATCTTACAAAACCAGTGG 308
Query 559 AGCCCCATCTACGACGTTGCTGCAGTTCTCACATCAATTCAGTCTTTGCTCTGTGACCCA 618
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 309 AGTCCCATCTATGACGTTGCTGCAGTTCTCACATCAATTCAGTCTTTGCTTTGTGACCCA 368
Query 619 AACCCTGACTCACCAGCGAACGCAGAGGCTGCAAGGTTGTTCAGTGAGAATAAAAGAGAA 678
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 369 AACCCTGATTCACCAGCGAACGCAGAGGCTGCAAGGTTGTTCAGTGAGAATAAACGAGAA 428
Query 679 TATAACAGGAAAGTAA-TCGAGATCGTGGAGCAGAGCTATGTATAAATATGATTC-ATTT 736
|||||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||
Sbjct 429 TATAACAGGAAAGTAAGT-GAGATCGTGGAGCAGAGCTATGTATAA-TATGATTCCATTT 486
Query 737 TGTTGTATT 745
||||||||
Sbjct 487 -GTTGTATT 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5