BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62540.1 Length=877 Score E Sequences producing significant alignments: (Bits) Value Ahg951033 jgi|Araly1|951033|scaffold_802920.1 798 0.0 > Ahg951033 jgi|Araly1|951033|scaffold_802920.1 Length=494 Score = 798 bits (432), Expect = 0.0 Identities = 471/489 (96%), Gaps = 5/489 (1%) Strand=Plus/Plus Query 259 TTTCCAACAGCAATGACAACTCCAGCAAAAAAGAGACTGATGTGGGATTTCAAGAGACTG 318 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 9 TTTCCAACAGCAATGACAACTCCAGCAAGAAAGAGACTGATGTGGGATTTCAAGAGACTG 68 Query 319 CAGAAAGATCCTCCTGTGGGAATAAGTGGAGCTCCACAAGATAACAATATCATGCATTGG 378 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 69 CAGAAAGATCCTCCTGTGGGAATTAGTGGAGCTCCACAAGATAACAATATCATGCATTGG 128 Query 379 AATGCTCTCATCTTTGGACCTGAGGACACTCCATGGGATGGAGGTACTTTCAAGTTGACT 438 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 129 AATGCTGTCATCTTTGGACCTGATGACACTCCATGGGATGGAGGTACTTTCAAGTTGACT 188 Query 439 CTTCACTTCACCGAGGATTATCCGAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATG 498 ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 189 CTTCAGTTCACCGAGGATTACCCGAACAAACCCCCTATTGTTCGGTTTGTTTCACGGATG 248 Query 499 TTTCATCCAAACATTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGG 558 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 249 TTTCATCCAAACATTTATGCTGATGGAAGCATTTGCTTGGATATCTTACAAAACCAGTGG 308 Query 559 AGCCCCATCTACGACGTTGCTGCAGTTCTCACATCAATTCAGTCTTTGCTCTGTGACCCA 618 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 309 AGTCCCATCTATGACGTTGCTGCAGTTCTCACATCAATTCAGTCTTTGCTTTGTGACCCA 368 Query 619 AACCCTGACTCACCAGCGAACGCAGAGGCTGCAAGGTTGTTCAGTGAGAATAAAAGAGAA 678 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 369 AACCCTGATTCACCAGCGAACGCAGAGGCTGCAAGGTTGTTCAGTGAGAATAAACGAGAA 428 Query 679 TATAACAGGAAAGTAA-TCGAGATCGTGGAGCAGAGCTATGTATAAATATGATTC-ATTT 736 |||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||| Sbjct 429 TATAACAGGAAAGTAAGT-GAGATCGTGGAGCAGAGCTATGTATAA-TATGATTCCATTT 486 Query 737 TGTTGTATT 745 |||||||| Sbjct 487 -GTTGTATT 494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32480725284 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5