BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62550.1
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358455 jgi|Araly1|358455|fgenesh1_pg.C_scaffold_8002242 1251 0.0
> Ahg358455 jgi|Araly1|358455|fgenesh1_pg.C_scaffold_8002242
Length=1317
Score = 1251 bits (677), Expect = 0.0
Identities = 778/828 (94%), Gaps = 2/828 (0%)
Strand=Plus/Plus
Query 77 ATGGAGAAATCAATGGAGAAAAGCGTGAGCTCTGCTGCTTCTGGTAATTCAATAAACTCG 136
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAATCGATGGAGAAAAGCGTGAGCTCTGCTGCTTCTGGTAATTCAATAAACTCG 60
Query 137 AAGCTGAGGTATCCTCTCAGATCGGCTCTTAGATCCAAGGAAGGGAAGCCTCCTGTTCCT 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCTGAGGTATCCTCTCAGATCGGCTCTTAGATCCAAGGAAGGGAAGCCTCCTGTTCCT 120
Query 197 GATTTCTCTGCTTCTTCTATGCCCAGAAGGGCACGAGTTG-TATCTGCTGTTAGTCAGAG 255
|||||||| ||||||||| |||||||||||| |||||||| | |||||||||||||||||
Sbjct 121 GATTTCTCAGCTTCTTCTGTGCCCAGAAGGGGACGAGTTGCT-TCTGCTGTTAGTCAGAG 179
Query 256 TACAACAGTTCTTGATTTGTCTGGGAAGAAGAGTGTTGATCGAACCAAGCTACCACCAAG 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TACAACAGTTCTTGATTTGTCTGGGAAGAAGAGTGTTGATCGAACCAAGCTACCACCAAG 239
Query 316 AAGACTTTCGATTCCAAACAAGCCCACAAGCAATTCTTCTGTTAAATCAGTGAGCAGCAG 375
||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 240 AAGACTTTCGATTCCAAACAAGCCCACTAGCAATTCATCTGTTAAATCAGTGCGCAGCAG 299
Query 376 CGTCACTTCTCTTTCTGAAGTCAAGCCAAAGAGATCACGCATTGTTCCTAGAAGCTTCAA 435
||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||| ||
Sbjct 300 CGTCACTTCTCTTTCAGAAGTCAAGCCAAAGAGATCAGGCATTGTTGCTAGGAGCTTGAA 359
Query 436 TGAAACAACAACACCTGTCTCTAGTAATCTCAGATCATCAGTGACTCGAAAGAAAGTTGA 495
|||||||||||||||||||||||||||||||||||||||| ||||||| | || ||||||
Sbjct 360 TGAAACAACAACACCTGTCTCTAGTAATCTCAGATCATCAATGACTCGGAGGAGAGTTGA 419
Query 496 AGACTTGTCTTCCTCTACTTATTGGCTGACTCATATCAAGCTAGCTGAATCCGTGGCGAA 555
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 420 AGACTTGTCTTCCTCTACTTATTGGCTGACTCATATCAAGCTAGCTGAATCAGCAGCGAA 479
Query 556 ACATTCGATCTCTCTCGGTTTCTTTAAACTTGCTCTTCATGCAGGGTGTGAGCCACTTGA 615
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 ACATTCAATCTCTCTTGGTTTCTTTAAACTTGCTCTTCATGCTGGGTGTGAGCCACTTGA 539
Query 616 CAAGATGAAAGAAGAGTTGAAATTGTATGCTCGTCGCAATAACATGGATGGGCTTGCTGA 675
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 CAAGATGAAAGAAGAGTTGAAATCCTATGCTCGTCGCAATAACATGGATGGGCTTGCTGA 599
Query 676 TGCTATGAAGGAACTTTCGGAACTGTACAATATCTCTGAAGAATCCAATCAGGTGCAGGT 735
||||||||||||||| |||||||||||||||||||| || |||||||| || | ||| |
Sbjct 600 TGCTATGAAGGAACTATCGGAACTGTACAATATCTCAGACGAATCCAAGGAGATTCAGAT 659
Query 736 CTCGGAGACTAGTTCTGTTGTAGCTGAAGAAACAGCTATGTCTCTGAACAACGATAATGA 795
|| ||||| |||||||||||||||||||||| | | ||||||||||||| ||||||||
Sbjct 660 TTCAGAGACCAGTTCTGTTGTAGCTGAAGAAAGAACCGTGTCTCTGAACAATGATAATGA 719
Query 796 TGTCCAGAGTTCATTCTCCACTCCTGGAAATTCGAACATCACATCAGAGATCACGAAAGA 855
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTCCAGAGTTCAATCTCCACTCCTGGAAATTCGAACATCACATCAGAGATCACGAAAGA 779
Query 856 CGATGCTTTGCAAGATTCAACCGTCACAAAAACAACTAAGGAAAAAGA 903
||||||||| | |||||||| |||||| |||||| ||||||| ||||
Sbjct 780 CGATGCTTTACCGGATTCAACTGTCACAGAAACAAGTAAGGAAGAAGA 827
Score = 701 bits (379), Expect = 0.0
Identities = 444/475 (93%), Gaps = 6/475 (1%)
Strand=Plus/Plus
Query 1032 AAGAAGATGCTTTGCAAGATTCATCTGTCACAGAAACAACTAAGGAAG-AGCAGGCGTTG 1090
|||| |||||||| | |||||| ||||||||||||||| |||||||| || |||| | |
Sbjct 776 AAGACGATGCTTTACCGGATTCAACTGTCACAGAAACAAGTAAGGAAGAAG-AGGCCTCG 834
Query 1091 GAAACTGTAACACAAGGAAGAACTAGAAAGTCTCTGGAGGTAATCAATGTGAACCAAGAG 1150
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 835 GAAACTGTAACACAAGGAAGAACTAGAAAGTCTTTGGAGGTAATCAACGTGAACCAAGAG 894
Query 1151 AATGATTCAGAGGTTGTTCAGGAATCCGAAGAAGGGCTCCGTCCATCAGCAGATGGTGTT 1210
|||| |||||||||||||||||||||||| |||||||| ||| |||||||||||| ||||
Sbjct 895 AATGTTTCAGAGGTTGTTCAGGAATCCGAGGAAGGGCTTCGTTCATCAGCAGATGCTGTT 954
Query 1211 -CAGATCGTGACTGTTGTTAAACCTTCAGACAAGAAACGTGCCAGAAAGGAGACTGTTCC 1269
|| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||
Sbjct 955 CCA-ATCGTGACTGTTGTTCAACCTTTAGACAAGAAACGTGCAAGAAAGGAGACTGTTCC 1013
Query 1270 TAAGAACAACCTGCCGGTGAGGACAAAGAAATCACTAGCAACCAACTCTGCTAATTCAAA 1329
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TAAGAACAACCAGCCTGTGAGGACAAAGAAATCACTAGCAACCAACTCTGCTAATTCAAA 1073
Query 1330 AACAGTT-CAAGTAAACAAGGATGATAAGTCTCAGAAGAAGTCTGAGAGGATCACTAAAC 1388
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GACAGTTCCAA-TAAACAAGGATGATAAGTCTCAGAAGAAGTCTGAGAGGATCACTAAAC 1132
Query 1389 CCAGGACTAAGAGAGTTCAAGAAGAGTCAAAGAAGTCAATTAAGAAATCTACTGCTAAAG 1448
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1133 CCAGGACTAAAAAAGTTCAAGAAGAGACAAAGAAGTCAATTAAGAAATCTACTGCAAAAG 1192
Query 1449 AAGGTGAAGTTAAATCTCTGAAGCAAACAGAGAAAATGGAGAACAAAGAAAACAC 1503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AAGGTGAAGTTAAATCTCTGAAGCAAACAGAGAAAATGGAGAACAAAGAAAACAC 1247
Score = 63.9 bits (34), Expect = 4e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1504 GGTTGTTGTTGGTGCAGGAGAAGACATCCAGGTTTAA 1540
|||||||| ||||||||||||||||||||||||||||
Sbjct 1281 GGTTGTTGGTGGTGCAGGAGAAGACATCCAGGTTTAA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67686365365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5