BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62560.1
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496435 jgi|Araly1|496435|fgenesh2_kg.8__2251__AT5G62560.1 2671 0.0
Ahg485145 jgi|Araly1|485145|fgenesh2_kg.5__1137__AT3G47820.1 806 0.0
Ahg945187 jgi|Araly1|945187|scaffold_701416.1 287 2e-76
> Ahg496435 jgi|Araly1|496435|fgenesh2_kg.8__2251__AT5G62560.1
Length=1873
Score = 2671 bits (1446), Expect = 0.0
Identities = 1662/1766 (94%), Gaps = 15/1766 (1%)
Strand=Plus/Plus
Query 13 tttttAGCTCGGAGCCGCTTCTTCTTTCTTCATCTTCTTCCTCCTCTCAATAACCCAAGT 72
||||||||||||||||| |||| ||||||||||||||||||||||||| |||| || |
Sbjct 1 TTTTTAGCTCGGAGCCG---CTTC-TTCTTCATCTTCTTCCTCCTCTCAAAAACCTAA-T 55
Query 73 TTTTTCGCCGATGGGTGGAAACAAGCAGAGATGGTTCTCTTTCCACCAACGATCCTCATC 132
|||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 56 TTTTCCTCCGATGGGTGGAAATAAGCAGAGATGGTTCTCTTTCCACCAACGATCCTCATC 115
Query 133 CGCCACCACTACTACTTTACCACAACACAAACACGACGAGACTCCACCGGAGTTTCTTTG 192
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 116 CGCCACCACTACAACTATACCACAGCACAAACACGACGAGACTCCACCGGAGTTTCTTTG 175
Query 193 TCCCATCACCGGATTCCTCATGTCGGATCCCGTCGTCGTCTCTTCCGGTCAAACCTTCGA 252
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 176 CCCCATCACCGGATTCCTCATGTCGGATCCTGTAGTCGTCTCTTCCGGTCAAACCTTCGA 235
Query 253 GCGTCTCTCTGTTCAAGTCTGTCGTAACTTAGGGTATATACCGGATCTCCTAGACGGTAC 312
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 236 GCGTCTCTCTGTTCAAGTCTGTCGTAACTTAGGGTATGTACCGGATCTCCTAGACGGTAC 295
Query 313 CCGACCCGATCTTTCCACCGTCATCCCCAATCTCGCAATGAAATCCACCATTTTCAGTTG 372
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 296 CCGACCCGATCTCTCCACCGTCATCCCCAATCTCGCCATGAAATCCACCATTTTCAGCTG 355
Query 373 GTGTGATCGGCAAAAAGTTGACCATCCTCGTCCTCCTGATGCCGCTTACGTCGAAGGCGT 432
||| || ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 356 GTGCGACCGGAAAAAAGTTGACCATCCTCGTCCTCCTGATTCCGCTTACGTCGAAGGCGT 415
Query 433 GGTTCGTGCCCGAATGGATAAAGATCCTAATCCAAGTCCG-----G-GTCAAAGTCCGGG 486
||||||||||||||||||||||||||| ||||| |||||| | ||||||| |||||
Sbjct 416 GGTTCGTGCCCGAATGGATAAAGATCCGAATCCGAGTCCGACTCCGAGTCAAAGCCCGGG 475
Query 487 TCCGGGTGA-TAAGGA-TCCGGAGCCTGAGATTCTCCCTCCTGTAGAAGAGAATTCACCT 544
|| || | | | | || ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 476 TCTGGAT-ACT-ACGACTCCGGAGTCTGAGATTCTCCCTCCTGTAGAAGAGGATTCACCT 533
Query 545 TCGGATTACGATGCTGTGATGGAAGCGATTCGAGCTCGATCAAAGAATTCAATGTCGCCG 604
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 534 TCGGATTACGATGCTGTGATGGAAGCGATTCGAGCTCGATCGAAGAATTCAATGTCGCCG 593
Query 605 ACGACGTCTCTTGAATCGGTGACGATTGGTCAGAGTTCATATCACCCGGTTCGAGCCGTT 664
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 594 ACGACGTCTCTTGAATCGGTGACGATTGGTCAGAGTCCGTATCACCCGGTTCGAGCCGTT 653
Query 665 AGTATGTTCTCTTCTTCAACTACTTCTTCTTCCTCTGGAGTTTTCGCTGGTGCTGATAGT 724
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 654 AGTATGTTCTCTTCTTCAACTAATTCTTCTTCCTCTGGAGTTTTCGCTGGAGCTGATAGT 713
Query 725 CCATTTCGAAACGCTATGTCTTTCTCTTCCACTGATCACTCTTCTTCTCCGATGTCACCG 784
||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||
Sbjct 714 CCATTTCGAAACGCTATCTCTTTCTCTTCCTCCGATCACTCTTCTTCTCCGATGTCGCCG 773
Query 785 GAAGAAGAAGAGATCTTCAATAAATTGAGAGGTACCGACATTTTCGACCACGAGCAAGGT 844
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 774 GAAGAAGAAGAGATCTTCAACAAATTGAGAGGTACCGACATTTTCGACCACGAGCAAGGT 833
Query 845 TTGATTCTTCTTAGGAAGATGACGAGATCTAGTGAAGATCTTCGGGTTTCGCTTTGTACA 904
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 834 TTGATTCTTCTTAGGAAGATGACGAGATCTGGTGAAGATCTTAGGGTTTCGCTTTGTACA 893
Query 905 GATCGGATTCTCTCTTTTCTCCGATCGCTGCTTGTTTCACGGTACAATCTTGTTCAGACT 964
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 894 GATCGGATTCTCTCTTTTCTCCGATCACTGCTTGTTTCACGGTACAATATTGTGCAGACA 953
Query 965 AACGCCGCTGCTTCGGTGGTTAATCTCTCGTTGGAAAAACAGAACAAAGTTAAGATCGTA 1024
|||||||| || ||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 954 AACGCCGCCGCGTCGCTGGTTAATCTCTCGCTGGAGAAACAGAACAAAGTTAAGATCGTG 1013
Query 1025 CGGTCAGGATTTGTTCCTCTGTTGATCGATGTTTTGAAATCGGGAACGACGGAGGCGCAG 1084
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1014 CGGTCAGGATTTGTTCCTCTGTTGATCGACGTTTTGAAATCGGGAACGACGGAGGCGCAG 1073
Query 1085 GAACATGTTGCCGGAGCTTTGTTTAGTTTGGCGTTGGAAGATGAGAACAAAATGGTGATC 1144
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1074 GAACATGTCGCCGGAGCTTTGTTTAGTTTGGCGTTGGAAGATGAGAACAAAATGGTTATC 1133
Query 1145 GGAGTTCTTGGTGCGGTGGAGCCGCTTCTTCACGCGCTTCGGTCGTCGGAGAGTGAAAGA 1204
|||||||| |||||||| |||||||||||||| ||||| || || |||||||||||||||
Sbjct 1134 GGAGTTCTCGGTGCGGTTGAGCCGCTTCTTCATGCGCTGCGTTCATCGGAGAGTGAAAGA 1193
Query 1205 GCGCGGCAAGATGCAGCTCTTGCGCTTTACCATTTGTCCCTGATTCCGAGCAATAGAACT 1264
||||| ||||| ||||||||||||||||| |||||||| || ||||||||||| ||||
Sbjct 1194 GCGCGTCAAGACGCAGCTCTTGCGCTTTATCATTTGTCGCTTATTCCGAGCAACCGAACA 1253
Query 1265 AGGCTGGTTAGAGCTGGTGCGGTGCCGACTCTGCTTTCGATGGTAAGATCGGGTGATTCG 1324
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1254 AGGCTGGTTAGAGCTGGTGCGGTGCCAACTCTGCTTTCGATGGTAAGATCCGGCGATTCG 1313
Query 1325 ACTAGCCGGATTTTGCTGGTACTATGTAACCTGGCCGCTTGTCCAGACGGAAAAGGTGCG 1384
|||||||| |||||||| ||||| |||||||| || |||||||||||||||||||| |||
Sbjct 1314 ACTAGCCGAATTTTGCTAGTACTTTGTAACCTTGCGGCTTGTCCAGACGGAAAAGGCGCG 1373
Query 1385 ATGTTAGATGGAAACGCGGTGGCGATTTTGGTAGGGAAGCTTAGAGAAGTCGGAGGTGGT 1444
||| |||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1374 ATGCTAGACGGAAATGCGGTGGCGATTCTGGTAGGGAAGCTCAGAGAAGTCGGAGGTGGT 1433
Query 1445 GATTCAGAGGCGGCGCGTGAGAATTGTGTGGCGGTTCTGTTGACGTTGTGTCAAGGGAAT 1504
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1434 GATTCCGAGGCGGCGCGTGAGAACTGTGTGGCGGTTCTGTTGACGTTGTGTCAAGGGAAT 1493
Query 1505 TTGAGGTTTAGGGGGTTGGCGAGTGAGGCGGGAGCGGAGGAAGTGTTGATGGAAGTGGAA 1564
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1494 TTGAGGTTTAGGGGGTTAGCGAGCGAGGCGGGAGCGGAGGAAGTGTTGATGGAAGTGGAA 1553
Query 1565 GAGAATGGGAATGAACGGGTGAAGGAGAAGGCGTCGAAGATTCTGCTGGCGATgagagga 1624
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1554 AAGAATGGGAATGAACGGGTGAAGGAGAAGGCGTCGAAGATTCTGCAGGCGATGAGAGGA 1613
Query 1625 ggaggcggaggagagagTGAGTTTGGGGAAAATGCGGAGGCGCGTGAGTGGAACCGTATG 1684
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1614 GGAGGCGGAGGAGAGAGTGAGTATGGGGAAAATGCGGAGGCGCGTGACTGGAACCGTATG 1673
Query 1685 CTTGAAGCGACTGGGCTAAGTCGGACTCAGTTTCAAGGAGGGCAAAATGGGGGTTTTGCT 1744
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1674 CTTGAAGCGACTGGGCTAAGTCGGACTCAGTTTCAAGGAGGGCAAAATGGAGGTTTTGCT 1733
Query 1745 TATTCCTCCCAGTTCTAGCttttttt 1770
||||||||||||||||||||||||||
Sbjct 1734 TATTCCTCCCAGTTCTAGCTTTTTTT 1759
> Ahg485145 jgi|Araly1|485145|fgenesh2_kg.5__1137__AT3G47820.1
Length=1544
Score = 806 bits (436), Expect = 0.0
Identities = 845/1035 (82%), Gaps = 58/1035 (6%)
Strand=Plus/Plus
Query 760 TCACTCTTCTT-CTCCGATGTCACCGGAAGAAGAAGAGATCTTCAATAAATTGAG-AG-G 816
||| |||| || |||||||||||||||||||||||||||||| ||| ||||| || || |
Sbjct 534 TCA-TCTT-TTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTAAGCAGCG 591
Query 817 TACCGACATTTTCGACCACGAGCAAGGTTTGATTCTTCTTAGGAAGATGACGAGATCTAG 876
|| |||| |||| |||||||||||| |||||| || ||||||| ||||||||| |
Sbjct 592 TA--GACACAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAA 649
Query 877 TGAAGATCTTCG-G-GTTTCGCTTTGTACAGATCGGATTCTCTCTTTTCTCCGATCGCTG 934
| ||| | || | | || ||||| || |||||||||||||| || |||||||| |||
Sbjct 650 CG-AGAGC-ACGAGAATCTCTCTTTGCACTGATCGGATTCTCTCATTACTCCGATCTCTG 707
Query 935 CTTGTTTCACGGTACAATC-TTGTTCAGACTAACGCCGCTGCTTCGGTGGTTAATCTCTC 993
| |||||||||||||| | | || || || |||||||| || ||| | |||||||||||
Sbjct 708 ATCGTTTCACGGTACAA-CATCGTGCAAACAAACGCCGCCGCATCGATTGTTAATCTCTC 766
Query 994 GTTGGAAAAACAGAACAAAGTT-AAGATCGTACGGTCAGGATTTGTTCCTCTGTTGATCG 1052
||| || |||| |||||| || || ||||||||||||||||| |||||| |||||||||
Sbjct 767 GTTAGAGAAACCTAACAAA-TTGAAAATCGTACGGTCAGGATTCGTTCCTTTGTTGATCG 825
Query 1053 ATGTTTTGAAATCGGGAACGACGGAGGCGCAGGAACATGTTGCCGGAGCTTTGTTTAGTT 1112
||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||
Sbjct 826 ATGTTTTGAAATCGGGATCAACGGAGGCGCAAGAACATGTAATCGGAGCTTTGTTTAGTT 885
Query 1113 TGGC-GTTGGAAGATGAGAACAAAATGGTGATCGGAGTTCTTGGTGCGGTGGAGCCGCTT 1171
| || ||| || || |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 886 TAGCGGTT-GAGGAAGAGAACAAGATGGTGATCGGGGTTCTTGGTGCGGTGGAGCCGCTT 944
Query 1172 CTTCACGCGCTTCGGTCGTCGGAGAGTGAAAGAGCGCGGCAAGATGCAGCTCTTGCGCTT 1231
|||||||||||||| || ||||||||||| |||||||| ||||| || || |||||||||
Sbjct 945 CTTCACGCGCTTCGATCATCGGAGAGTGAGAGAGCGCGTCAAGACGCGGCGCTTGCGCTT 1004
Query 1232 TACCATTTGTCCCTGATTCCGAGCAATAGAACTAGGCTGGTTAGAGCTGGTGCGGTGCCG 1291
|| ||| |||| ||||||||| || ||| ||||||||||| ||| ||||||||||||
Sbjct 1005 TATCATCTGTCGTTGATTCCGAATAACCGAATTAGGCTGGTTAAAGCCGGTGCGGTGCCG 1064
Query 1292 ACTCT-GCTTTCGATGGTAAGATCGGGTGATTCGACTAGCCGGATT-TTGCTGGTACTAT 1349
| | | ||| || ||| | ||||| ||||| ||| | ||||||||| || || ||||||
Sbjct 1065 A-TGTTGCTGTCTATGATCAGATCCGGTGAATCGGCGAGCCGGATTCTTT-TGTTACTAT 1122
Query 1350 GTAACCTGGCCGCTTGTCCAGACGGAAAAGGTGCGATG-TTAGATGGAAACGCGGTGGCG 1408
|||| || || |||||| | || || ||||| |||||| || || || ||||||||| ||
Sbjct 1123 GTAATCTTGCGGCTTGTTCGGAAGGGAAAGGAGCGATGCTT-GACGGGAACGCGGTGTCG 1181
Query 1409 ATTTTGGTAGGGAAGCTTA-GAGAAG-TCGGAGGTGGTGATTCAGA-G-G-CGGCGCGTG 1463
|| |||| ||||| || |||||| | ||||| || || ||||| | | |||||||||
Sbjct 1182 ATACTGGTCGGGAAA-TTGCGAGAAGGT-GGAGGAGGAGAGTCAGACGCGGCGGCGCGTG 1239
Query 1464 AGAATTGTGT-GGCGG-TTCTGTTGACGTTGTGTCAAGGGAATTTGAGGTTTAGGGGGTT 1521
||||||| || || || || ||||||||||| || ||||||| |||||||||| || ||
Sbjct 1240 AGAATTGCGTTGG-GGCTT-TGTTGACGTTGAGTGTAGGGAATATGAGGTTTAGAGGATT 1297
Query 1522 GGCGAGTGAGGCGGGAGCGGAGGA-AGTGTTGATGGAA---GTGGA-AGAGA-ATG-GGA 1574
||||||||||||||| |||||||| | | |||| |||| ||||| || || | | |||
Sbjct 1298 GGCGAGTGAGGCGGGTGCGGAGGAGATT-TTGACGGAAATTGTGGAGAGCGAGA-GCGGA 1355
Query 1575 AT-GAACGGGTGAAGGAGAAGGCGTCGAAGATTCTGCTGGCGATgagaggaggaggcgga 1633
| | ||| |||||||||| ||| | |||||||||| ||| || ||| ||| ||||
Sbjct 1356 AGCGGGCGGTTGAAGGAGAAAGCGGCAAAGATTCTGCAGGC-ATT-GAG-AGG---CGGA 1409
Query 1634 ggagagagTGAGTTTGGGGAAAATGCGGAGGCGCGTGAGTGGAACCGTATGCTTG-AAGC 1692
|| || | ||| ||||| ||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 1410 GG-GA-A-TGATTTTGGAGAAGGTGCGGAGGCGCGTGAGTGGAACCGTATG-TTGGAAGC 1465
Query 1693 GACTGGGCTAAGTCGGACTCAGTTTCAA---GGAGGGCAAAATGGGGGTTTTGCTTATTC 1749
|| |||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1466 GAGTGGGCTAAGTCGTTCTCAGTTTCAACAAGGAGGGCAAAAAGGGGGTTTCGCTTATTC 1525
Query 1750 CTCCCAGTTCTAGCt 1764
||| ||||| |||||
Sbjct 1526 CTCTCAGTTTTAGCT 1540
> Ahg945187 jgi|Araly1|945187|scaffold_701416.1
Length=1129
Score = 287 bits (155), Expect = 2e-76
Identities = 295/361 (82%), Gaps = 15/361 (4%)
Strand=Plus/Plus
Query 760 TCACTCTTCTT-CTCCGATGTCACCGGAAGAAGAAGAGATCTTCAATAAATTGAG-AG-G 816
||| |||| || |||||||||||||||||||||||||||||| ||| ||||| || || |
Sbjct 651 TCA-TCTT-TTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTAAGCAGCG 708
Query 817 TACCGACATTTTCGACCACGAGCAAGGTTTGATTCTTCTTAGGAAGATGACGAGATCTAG 876
|| |||| |||| |||||||||||| |||||| || ||||||| ||||||||| |
Sbjct 709 TA--GACACAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAA 766
Query 877 TGAAGATCTTCGGGT-T-TCGCTTTGTACAGATCGGATTCTCTCTTTTCTCCGATCGCTG 934
|| | | || | | || ||||| || |||||||||||||| || |||||||| |||
Sbjct 767 CGAGGG-CA-CGAGAATCTCTCTTTGCACTGATCGGATTCTCTCGTTACTCCGATCTCTG 824
Query 935 CTTGTTTCACGGTACAATCTT-GTTCAGACTAACGCCGCTGCTTCGGTGGTTAATCTCTC 993
| |||||||||||||| | | || || || |||||||| || ||| | |||||||||||
Sbjct 825 ATCGTTTCACGGTACAA-CATCGTGCAAACAAACGCCGCCGCATCGATCGTTAATCTCTC 883
Query 994 GTTGGAAAAACAGAACAAAGTT-AAGATCGTACGGTCAGGATTTGTTCCTCTGTTGATCG 1052
||| || |||| |||||| || || ||||||||||||||||| |||||| | |||||||
Sbjct 884 GTTAGAGAAACCTAACAAA-TTGAAAATCGTACGGTCAGGATTCGTTCCTTTATTGATCG 942
Query 1053 ATGTTTTGAAATCGGGAACGACGGAGGCGCAGGAACATGTTGCCGGAGCTTTGTTTAGTT 1112
|||||||||||||| || | ||||||||||| |||||||| |||||||||||||||||
Sbjct 943 ATGTTTTGAAATCGAGATCAACGGAGGCGCAAGAACATGTAATCGGAGCTTTGTTTAGTT 1002
Query 1113 T 1113
|
Sbjct 1003 T 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75609136325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5