BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62570.2
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332487 jgi|Araly1|332487|fgenesh1_pm.C_scaffold_8001830 1528 0.0
> Ahg332487 jgi|Araly1|332487|fgenesh1_pm.C_scaffold_8001830
Length=1455
Score = 1528 bits (827), Expect = 0.0
Identities = 924/972 (95%), Gaps = 2/972 (0%)
Strand=Plus/Plus
Query 55 ATGAGATTACAAACCGTCAAACATTTTCTCGAACCTGTTCTCGAGCCCTTAATTCGTAAA 114
|||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1 ATGAGATTGCAAACTGTCAAACATTTTCTCGAACCCGTTCTCGAGCCATTGATTCGTAAA 60
Query 115 GTGGTCAAAGAAGAAGTTGAATTAGCTCTTGGAAAGCATCTAGCAGGCATCAAGTGGATT 174
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGTCAAAGAAGAAGTTGAATTGGCTCTTGGAAAGCATCTAGCAGGCATCAAGTGGATT 120
Query 175 TGTGAGAAAGAGACTCATCCTTTGGAATCAAGGAATCTACAGTTAAAGTTCTTGAACAAT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGAGAAAGAGACTCATCCTTTGGAATCAAGGAATCTACAGTTAAAGTTCTTGAACAAT 180
Query 235 CTATCGCTTCCCGTGTTTACTTCAGCTCGGATAGAAGGAGATGAAGGCCAAGCTATAAGA 294
|||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 181 CTATCGCTTCCCTTGTTTACTTCAGCTCGAATAGAAGGAGCTGAAGGCCAAGCTATAAGA 240
Query 295 GTTGGATTAATAGACCCTTCAACTGGCCAAATTTTCTCTTCTGGTCCTGCATCATCCGCC 354
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 241 GTTGGATTAATTGACCCTTCAACTGGCCAAATTGTCTCTTCTGGTCCTGCATCATATGCG 300
Query 355 AAACTCGAAGTTTTTGTCGTTGAGGGTGATTTTAACAGTGTTAGTGATTGGACTGA-TGA 413
|| |||||| ||||||| |||||||||||||| |||||| |||||| ||||| | |||
Sbjct 301 AAGCTCGAAATTTTTGTTGTTGAGGGTGATTTCGACAGTGATAGTGACTGGAC-AACTGA 359
Query 414 GGATATCAGGAATAACATTGTAAGAGAGAGAGAAGGAAAGAAACCTCTACTCAATGGGAA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGATATCAGGAATAACATTGTAAGAGAGAGAGAAGGAAAGAAACCTCTACTCAATGGGAA 419
Query 474 TGTATTTGCGGTTCTTAATGATGGCATTGGTGTTATGGATGAAATCTCATTTACAGATAA 533
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 420 TGTATTTGCGGTTCTTAATGATGGCATCGGTGTTGTGGATGAAATTTCATTTACAGATAA 479
Query 534 CTCTAGCTGGACTAGGAGCAGGAAGTTCAGACTCGGGGTACGAATAGTGGATCAGTTTGA 593
||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct 480 CTCTAGCTGGACTAGGAGCAGGAAGTTCAGACTTGGGGTACGGATGGTGGATCAATTTGA 539
Query 594 TTATGTCAAAATTAGAGAGGCAATAACAGAGTCCTTTGTCGTAAGAGATCATCGAGGAGA 653
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTTGTCAAAATTAGAGAGGCAATAACAGAGTCCTTTGTCGTAAGAGATCATCGAGGAGA 599
Query 654 GTTGTACAAAAAGCATCATCCTCCTTCTCTTTTCGATGAAGTATGGAGATTGGAAAAGAT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTGTACAAAAAGCATCATCCTCCTTCTCTTTTCGATGAAGTATGGAGATTGGAAAAGAT 659
Query 714 AGGGAAAGATGGAGCATTTCACAGACGACTGAATTTGTCAAATATAAACACTGTCAAGGA 773
||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 660 AGGAAAAGATGGAGCATTTCATAAACGACTGAATTGGTCAAATATAAACACTGTCAAGGA 719
Query 774 TTTCTTAACACATTTCCATTTAAACTCTTCAAAACTCCGACAAGTTCTTGGTACGGGTAT 833
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTCCTCACACATTTCCATTTAAACTCTTCAAAACTCCGACAAGTTCTTGGTACGGGTAT 779
Query 834 GTCTTCAAAGATGTGGGAAATTACTTTGGACCATGCTCGATCATGTGTTCTAGATAGTAG 893
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 780 GTCTTCAAAGATGTGGGAAATTACGTTGGACCATGCTCGATCATGTGTTCTGGATAGTAG 839
Query 894 CGTCCATGTGTACCAAGCTCCTGGATTTCAGAAGAAAACAGCTGTTGTCTTCAACGTCGT 953
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 840 CGTCCATGTTTACCAAGCTCCTGGATTTCAGAAGAAAACCGCTGTTGTCTTCAATGTTGT 899
Query 954 AGCTCAAGTGCTTGGACTGCTCGTGGATTTTCAGTATATTCCTGCTGAAAAGTTATCAGA 1013
||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct 900 AGCTCAAGTACTTGGACTGTTCGTGGATTTTCAGTATATTCATGCTGAAAAGTTATCTGA 959
Query 1014 GATTGAAAAGGC 1025
||||||||||||
Sbjct 960 GATTGAAAAGGC 971
Score = 641 bits (347), Expect = 0.0
Identities = 433/471 (92%), Gaps = 20/471 (4%)
Strand=Plus/Plus
Query 1023 GGCTCAAGCGGAGGTGATGGTAATTGATGCATTGAGTCACCTAAATGAAGTAATCTCGTA 1082
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GGCTCAAGCCGAGGTGATGGTAATTGATGCATTGAGTCACCTAAATGAAGTAATCTCGTA 1061
Query 1083 TGATGATGAGGTTTCCATGATGAGGAACGTTCTCAATGCCCCGGC-TTCTCAAGGCAGTG 1141
|||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||
Sbjct 1062 TGATGATGAGGTTTCCATGATGAGGAACGTTCTCAATGTCCCGGCTTTC-CAAACCAGTG 1120
Query 1142 TTGCCGGGATTGATTATTCGGGTCTGAGTTTGACCAGTTTGGACGGATACGGTTTTGTGT 1201
| ||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1121 --G-CGGGATTGATTATTCCGGTCTGAGTTTGACCAGTTTGGATGGCTACGGTTTTGTGT 1177
Query 1202 C-AAGTCTTCACAACACAGCAGAATGTAGTGGCAAGCACAGTGATGATGTTGACATGGAA 1260
| || |||||||||||||||||||||||||||| || ||||| |||||| | |
Sbjct 1178 CTAA-TCTTCACAACACAGCAGAATGTAGTGGCCAGTACAGTAATGATG-T----T---- 1227
Query 1261 GTTACTCCACATGGTTTATATGAAGACTACGACAATCTCTGGAACTGCTCTCACATTCTA 1320
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 1228 GTTACTCCACATGGTTTATATGAAGACTACGACAATCTGTGGAATTGCTCTCAGATTCTA 1287
Query 1321 GGCTTAGAAGAACCGCAATCTGAGTTGCAGAGTGCGCTTGACGATTTCATGTCACAGAAG 1380
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1288 GGCTTAGACGAACCGCAATCTGAGTTGCAGAGTGCGCTTGACGATTTCGTGTCACAGAAG 1347
Query 1381 AATGCTTCGGTCGGTGGTAAGGCTCACAGCAAAAGATGGACAAAGCTTTTCAGTGTCTCG 1440
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 AATGCTTCGGTC---GGTAAGGCTCACAGCAAAAGATGGACAAAGCTTTTCAGTGTCTCG 1404
Query 1441 AGATGGCTCTCTGTTTTCAAGTATGTCA-AGTTAGGAAAAATATAAAATGA 1490
| |||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1405 AAATGGCTATCTGTTTTCAAGTATGTCACAGTTAGGAAAAATATGAAATGA 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68067267815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5