BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62575.2
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496438 jgi|Araly1|496438|fgenesh2_kg.8__2254__AT5G62575.2 739 0.0
> Ahg496438 jgi|Araly1|496438|fgenesh2_kg.8__2254__AT5G62575.2
Length=477
Score = 739 bits (400), Expect = 0.0
Identities = 452/476 (95%), Gaps = 8/476 (2%)
Strand=Plus/Plus
Query 1 GATCTTCGATACTCGTCTGGGCATGGCGTTTTTGCTCAACAACGCTTCAATTTCATCTCA 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATCTTCGATACTCGGCTGGGCATGGCGTTTTTGCTCAACAACGCTTCAATTTCATCTCA 60
Query 61 TTTACGCTCGTCTTCTTCACAGAAGACGGGTGATGCTTTATCAATATCGCGTCGTGGATT 120
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCCGTTCGTCTTCTTCACAGAAGACGGGTGATGCTTTATCAATATCGCGTCGTGGATT 120
Query 121 CCACATTGAGCCAGGAACTCGAGAGAAAGCTCTCTTGGCTGAAGATTCTGCTTTGAAGAG 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCACATCGAGCCAGGAACTCGAGAGAAAGCTCTCTTGGCTGAAGATTCTGCTTTGAAGAG 180
Query 181 ATTCAAGTCTCATAAGAAAAGTGTGCACAAACTGAAGAGGATTGGTGATGTGCTCACTGT 240
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 181 ATTCAAGTTTCATAAGAAAAGTGTGCACAAATTGAAGAGGATTGGTGATGTGCTCACAGT 240
Query 241 TGTTGTTGTTGCAGGATGTTGCTATGAAATCTATGTCAAAGCTGTGA-TGAAAAAAGAAG 299
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 241 CGTTGTTGTTGCAGGATGTTGCTATGAAATCTATGTCAAAGCTGTGATTG-GAAAAGAAG 299
Query 300 CTCTGGCTGCAGGG-AAAAGCTCATGAGTGTTCTTGTCTTTGTATGCCTTTTTGT-TTTA 357
|||||||||| ||| |||||||| ||||| ||||| ||||||| ||||||||| | |||
Sbjct 300 CTCTGGCTGC-GGGAAAAAGCTCCTGAGTCTTCTTATCTTTGTGTGCCTTTTTCTATTT- 357
Query 358 TCCTTTATACAGTGTCTCTTTCTAATAATCTCACAATAATGTTTGTTTACTCAATGAAAA 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCCTTTATACATTGTCTCTTTCTAATAATCTCACAATAATGTTTGTTTACTCAATGAAAA 417
Query 418 TGGCATCTAATAAAGTAGACTAAAAGAAAAAGACAT-T-GTCCAGGGAAACCAAAC 471
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 418 TGGCATCTAATAAAGTAGACAAAAAGAAAAAGACATATTGTCCAGGGAAACCAAAC 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5