BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62580.1
Length=2262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918021 jgi|Araly1|918021|Al_scaffold_0008_2772 2946 0.0
> Ahg918021 jgi|Araly1|918021|Al_scaffold_0008_2772
Length=1824
Score = 2946 bits (1595), Expect = 0.0
Identities = 1749/1822 (96%), Gaps = 15/1822 (1%)
Strand=Plus/Plus
Query 148 ATGGCGACGAAGAACTCAAAGCAAAACATGTCCGTGTTGTTAACTAAGCTCGGAGATCGA 207
||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCGACGAAGAACACGAAGCAAAACATGTCCGTGCTGTTAACTAAGCTCGGAGATCGA 60
Query 208 GATACTTTCACAATGGCGGCTCGTGAGCTTGATTTAATGGCTAGACAGATTGATCCTTCT 267
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 61 GATACTTTCACAATGGCGGCTCGAGAGCTTGATTTAATGGCTAGACAGATTGAT-C--CT 117
Query 268 TCCTCCTCCGGGAATCTCCAGTCGTTTATTTCCGTTATACTCTCCGTCGACACCGGAGAT 327
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 118 TCCTCCTCCGGGAATCTCCAGTCGTTTATTTCCGTTATACTCTCCGCCGACACCGGAGAT 177
Query 328 AAACCGGCGGTTCGTAAGCATTGTATTCACTTGCTCGCCGTTTTATCAGTTTCTCTTCCT 387
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 178 AAACCGGCGGTTCGTAAGCATTGTATTCACTTGCTCTCTGTTTTATCAGTTTCTCTTCCT 237
Query 388 CTCAATTCTCTATCTCCTTTCCTCTCTAAGATCCTCACTCGCATCACGAGACGTCTCCGT 447
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTCAATTCTCTGTCTCCTTTCCTCTCTAAGATCCTCACTCGCATCACGAGACGTCTCCGT 297
Query 448 GATCCCGACTCTTCGATTCGATCAACTTGCGTCGCGGCTGTGTCGGCGATCTCTTCACGC 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GATCCCGACTCTTCGATTCGATCAACTTGCGTCGCGGCTGTGTCGGCGATCTCTTCACGT 357
Query 508 ACGACGAAGCCTCCGTTTTACTCGGCGTTTATGAAGCCGTTAGCAGATACACTTTTCACT 567
|||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 358 ACGACGAAGCCTTCGTTTTATTCGGCGTTTATGAAGCCGTTAGCGGATACGCTTTTCACT 417
Query 568 GAGCAGGAGGTTAATGCGCAGATCGGAGCGGCGCTTTGTCTCGCGGCGGCGATTGATTCA 627
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 418 GAGCAAGAGGTTAATGCGCAGATCGGAGCTGCGCTTTGTCTCGCGGCGGCGATTGATTCG 477
Query 628 GCGTCTGATCCGGATCCGGTTCGGTTAGGGCAGACACTTTTGCCTAGGCTAGAGAAGCTC 687
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 478 GCGTCTGATCCGGATCCGGTTCGGTTAGGGCAGACACTTTTGCCTAGACTTGAGAAGCTG 537
Query 688 GTGAAGTGTAACGCGTTTAAGGCGAAATCGGCGGGAGTTGTTGTGATCGGAAGTGTGATT 747
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTGAAGTGTAATGCGTTTAAGGCGAAATCGGCGGGAGTTGTTGTGATCGGAAGTGTGATT 597
Query 748 GGTGCTGGTGGTTTGTCTGGAACCAGTGTGAGCTCCGGTGGATTGAAAGGACTTGTGGAT 807
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 GGTGCTGGTGGTTTGTCTGGAACCACTGTGAGCTCCGGTGGATTGAAAGGACTTGTGGAA 657
Query 808 TGCTTATTGAGCTTCTTGGTTAGTGAAGATTGGGCGGCGAGGAAAGCAGCTGCTGAAGCT 867
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 TGCTTATTGAGCTTCTTGGTTAGTGAAGATTGGGCCGCGAGGAAAGCAGCTGCTGAAGCT 717
Query 868 TTGGGGAGGTTAGCTACAATGGAGAGAAATGAGCTAGGTGAGTTCAAGGCTAAGTGCTTG 927
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 718 TTGGGGAGGTTAGCTACAATGGAGAGAAATGAGTTAGGTGAGTTCAAGGCTAAATGCTTG 777
Query 928 AAGATCTTTGAAAGCAGGAAATATGATAAGGTGAAAGCTGTGAGAGAGGTGATGAATCAG 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAGATCTTTGAAAGCAGGAAATATGATAAGGTGAAAGCTGTGAGAGAGGTGATGAATCAG 837
Query 988 ATGATGGAGGCTTGGAAACAGGTTCCAGATTTATCAGAAGAGGTTTCTCCACCCAGATCT 1047
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGATGGAGGCATGGAAACAGGTTCCAGATTTATCAGAAGAGGTTTCTCCACCCAGATCT 897
Query 1048 AATGCTTCTTCTAAAGGTGATGCAAGTGATGGACGATATCCTTCAGGGTCTAGAGTTGGT 1107
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 898 AATGCTTCTTCTAAAGGTGATGCAAGTGATGGACGATATCCTTCAGGATCTAGAGTTGCT 957
Query 1108 TCAACACCTGCTAAATCAAGAACTCATCTGGTTAACAGATCGACTCCACCGGGGAGTTCA 1167
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 958 TCAACACCTGCTAAATCAAGAACTCATCTAGTTAACAGATCGACTCCACCCAGGAGTTCA 1017
Query 1168 CTAGCCACCACGGCTAGGAAGCAGGCTAATAGAAAAAGCATTGATCAGAAGAAAACCAGT 1227
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 CTAGCCACCACGGCTAGGAAACAGGCTAGCAGAAAAAGCATTGATCAGAAGAAAACCAGT 1077
Query 1228 CTAACAGCATCACTTACAAAACCAAACGTGAGGAGAAGATTGGAATGGAAAGCTGGAGGA 1287
||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1078 CTAACGGCATCACATACAAAACCAAATGTGAGGAGAAGATTGGACTGGAAAGCTGGAGGA 1137
Query 1288 GCTAGTATTCCCACTGGTGTGTCTCTTGAAGACGAACAACATTGTGATCATGACGAGAAT 1347
||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||||||
Sbjct 1138 GCTAGTATTCCCACTGGTGTGCCTCTTGAAGACGAACAACATCGTGACCATAACGAGAAT 1197
Query 1348 GCGAAGGAAACGAGTCATTCTAGTCACAATACGGTGCAGAAGTTAGGAGGTGTTTCCAGT 1407
|| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 1198 GCAAAGGAAACGAGTCATTCTAGTCACAATACGATTCAGAAGCTAGGAGGTGTTTCCAGT 1257
Query 1408 TCTCTTAATGGCAATATCCCACCATCCGGTGCTACAATGGTAACAGGGCATCACGTCTTG 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1258 TCTCTTAATGGCAATATCCCACCATCCGGTGCTACAATGGTAACAGGGCATCATGTCTTG 1317
Query 1468 TCTGAAAACCCAAATAGTAATAACTGCAAAGGGCTTGAAGATATATCTTTGATCCGTAAT 1527
||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 1318 TCTGAAAACCCAAATAGTAGTAACTGCAAAGGGCTTGAAGATATATCTCTGCTCCGTAAT 1377
Query 1528 CAGCTTGTTCAGATTGAACAACAGCAAGCCAATCTAATGGATCTTCTTCAGAGATTTGTC 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CAGCTTGTTCAGATTGAACAACAGCAAGCCAATCTAATGGATCTTCTTCAGAGATTTGTC 1437
Query 1588 GGAAGCTCGCAACACGGAATGCGTGGTCTGGAAACACGAGTTCACGGATTAGAACTTGCT 1647
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1438 GGAAGCTCACAACACGGAATGCGCGGTCTGGAAACACGAGTTCACGGCTTAGAACTTGCT 1497
Query 1648 CTGGACGAAATATCTTATGACTTGGCGGTTTCAAATGGGAGAATGAGTAACGGTTCAAGC 1707
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CTGGATGAAATATCTTATGACTTGGCGGTTTCAAATGGGAGAATGAGTAACGGTTCAAGC 1557
Query 1708 AGAAACAACTGTTGTCTCCTTCCTTCTGGAAGTTTCATCAAATCTAAATTCTGGAAGAAA 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AGAAACAACTGTTGTCTCCTTCCTTCTGGAAGTTTCATCAAATCTAAATTCTGGAAGAAA 1617
Query 1768 CACGATTCCAAGTATTCAGCATCGAGAATGTCCACTTATAGGAACAGAAATGCAGAAACC 1827
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CACGATTCGAAGTATTCAGCATCGAGAATGTCCACTTATAGGAACAGAAATGCAGAAACC 1677
Query 1828 ACCGAGATACAAAACTCGAGGCATCGGTTTAATGGCTCTCCTGGATTTATAGTCAACCCA 1887
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ACAGGGATACAAAACTCGAGGCATCGGTTTAATGGCTCTCCTGGATTTATAGTCAACCCA 1737
Query 1888 TTAGCTGAAATTCGACCAGATAATG-ATCTGCAGGT---C----TG----CCTCACAATT 1935
||||||||||||||||||||||||| |||||||||| | || ||||||||||
Sbjct 1738 TTAGCTGAAATTCGACCAGATAATGGATCTGCAGGTAAACAAGCTGTATGCCTCACAATT 1797
Query 1936 GAGGGACGACGAGAAACAAAAC 1957
||||||||| ||||||||||||
Sbjct 1798 GAGGGACGAAGAGAAACAAAAC 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85169787820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5