BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62610.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496441 jgi|Araly1|496441|fgenesh2_kg.8__2257__AT5G62610.1 1932 0.0
> Ahg496441 jgi|Araly1|496441|fgenesh2_kg.8__2257__AT5G62610.1
Length=1198
Score = 1932 bits (1046), Expect = 0.0
Identities = 1156/1207 (96%), Gaps = 16/1207 (1%)
Strand=Plus/Plus
Query 1 ATTATCACTACCCACATCTGTCTTACCTTCTCCGATCTCTCTCTCTATTTGTCCACCTCA 60
||||||||| || ||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATTATCACTTGCCTCATATCTCTTACCTTCTCCGATCTCTCTCTCTGTTTGTCCACCTCA 60
Query 61 CACACAACCCTATAAACAAGACAAGACCTCGCAAAGCTCAAACCTTTTCCTTCttttttt 120
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TACACAACCCTATAAACACGACAAGACCTCGCAAAGCTCAAACCTTTTCCTTC--TTTTT 118
Query 121 CTATCAAGTTCCTCACTTCTCGGATCCGGGTCCTAAATCTGGGTCAACCCTTTTTACGAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 119 CTATCAAGTTCCTCACTTCTCGGATCCGGGTCCTAAATCTGGGTCAACCC-TTTTACGAT 177
Query 181 CATCGGAAATGGACCCTCCACTAGTGAACGATTCCTCCTTCTCTGCAGCTAATCCTTCTT 240
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 178 CATCGGAAATGGACCCTCCACTTGTGAACGATTCCTCCTTCTCCGCAGCTAATCCTTCTT 237
Query 241 CTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTCGCTCTGGTCTCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTCGCTCTGGTCTCC 297
Query 301 GTTTAGCTGTTAACTCCGGTCGAGTCTTTACTCGCTCTGAACATTCCGGCAATAAAGACG 360
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 298 GTTTAGCCGTTAACTCCGGTCGAGTCTTCACTCGGTCTGAACATTCCGGCAATAAAGACG 357
Query 361 TCTCCGCGGCTGAGGAATCTACAGTCACCGATCTAACTGCTGGCTGGGGAAGTAGAAAGA 420
|||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 358 TCTCGGCGGCAGAGGAATCTACTGTCACCGATCTAACTGCTGGCTGGGGAGGTAGAAAGA 417
Query 421 CTAGAGATTTGAACTCTGAGGATGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTA 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 CTAGAGATTTGAACTCTGAGGACGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTA 477
Query 481 ATGAATTGAAAGAATCAGGGGATAAGAAAAGAAAACTGTGTGGATCTGAAAGTGGAAATG 540
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 ATGAATTGAAAGAATCAGGCGATAAGAAAAGAAAACTTTGTGGATCTGAAAGTGGAAATG 537
Query 541 GAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTGG---AAGCAAAG 597
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 538 GAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTGGTGGAAGCAAAG 597
Query 598 CAACGGAACAGAAGAACAAACCTGAGCCACCAAAGGATTATATTCATGTGAGAGCAAGAA 657
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 598 CAACGGAACAGAAGAACAAACCAGAGCCACCGAAGGATTATATCCATGTGAGAGCAAGAA 657
Query 658 GAGGACAAGCTACTGACCGGCATAGTTTAGCAGAGCGAGCTAGAAGAGAAAAGATCAGTG 717
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 GAGGACAAGCTACTGACCGGCATAGTCTAGCAGAGCGAGCTAGAAGAGAAAAGATCAGTG 717
Query 718 AGAAGATGACAGCTCTTCAAGATATAATTCCAGGATGTAATAAGATAATCGGAAAAGCCC 777
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 AGAAGATGACAGCTCTTCAAGATATAATTCCGGGATGTAATAAGATAATCGGAAAAGCCC 777
Query 778 TTGTGCTCGATGAGATTATCAATTATATTCAGTCATTGCAGCGGCAAGTTGAGTTTCTAT 837
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 778 TTGTGCTCGATGAGATTATCAATTATATTCAGTCGTTGCAGCGGCAAGTTGAGTTTCTGT 837
Query 838 CAATGAAGCTAGAAGTTGTTAACTCGGGTGCAAGTACTGGTCCGACAATAGGAGTTTTTC 897
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 838 CAATGAAGCTAGAAGTTGTTAACTCAGGTGCAAGTACTGGTCCAACAATAGGAGTTTTTC 897
Query 898 CTTCCGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATACGAGCAACAAG 957
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 898 CTTCTGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATATGAGCAACAAG 957
Query 958 AAGCTAATGAAACCCGAGTATCTCAACCGGAGTGGCTCCATATGCAGGTTGATGGGAACT 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGCTAACGAAACCCGAGTATCTCAACCGGAGTGGCTCCATATGCAGGTTGATGGGAACT 1017
Query 1018 TTAACCGAACCACATAAAAAAGA-GTCTTTCTCTGATTGATGGATGTGTTTTGTAGGCAG 1076
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 1018 TTAACCGAACCACATAAAAAAAAAGTCTTTCTTTGATTGATGGATGTGTTTTGTAGGCAG 1077
Query 1077 TAAAAATGAATGCAACCCTTTATTTTTTATCCTATGCGTGTGTATCATTTTGCTGTTATA 1136
|||||||||||||||||||||||||||| || | | ||||||||||||||||||||||
Sbjct 1078 TAAAAATGAATGCAACCCTTTATTTTTTTTC-T--G--TGTGTATCATTTTGCTGTTATA 1132
Query 1137 TCAT-A-A-GATAGAATATGAGAGTGACCAGAGAGATTAACACTTTATAAAACATTGTTG 1193
|||| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TCATCATAAGATAGA-TATGAGAGTGACCAGAGAGATTAACACTTTATAAAACATTGTTG 1191
Query 1194 TATTGTC 1200
|||||||
Sbjct 1192 TATTGTC 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5