BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62620.1
Length=2613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496442 jgi|Araly1|496442|fgenesh2_kg.8__2258__AT5G62620.1 3849 0.0
> Ahg496442 jgi|Araly1|496442|fgenesh2_kg.8__2258__AT5G62620.1
Length=2534
Score = 3849 bits (2084), Expect = 0.0
Identities = 2383/2523 (94%), Gaps = 38/2523 (2%)
Strand=Plus/Plus
Query 106 TTTACGTTTCTTTCGGGTTTTGAATTTTCTCACTAAAGATTTGTCTTTTCCATA-GAAAG 164
|||| |||||||| ||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 35 TTTATGTTTCTTTTGGGTTTTGAATTTTCTCACCAAAGATTTGTCTTTTCCA-AGGAAAG 93
Query 165 TTCTTGAATTTTCTCTCTTCGTGTTCAAAGGGTTTTTCAGAATTTATA-GTAACC-CACC 222
|||||| ||||| |||||||||||| ||||||||||| |||| | | | ||| || |
Sbjct 94 TTCTTG-ATTTTTTCTCTTCGTGTTTTAAGGGTTTTTC--AATTGAAACATTACCACATC 150
Query 223 AATCTACTGATTG-TCTCCGTTCATCGTAATCTCTCAAGatttga---tttttatttgtt 278
||||||||||||| | |||||||||||| || ||||||||||||| ||||| ||| ||
Sbjct 151 AATCTACTGATTGTTTTCCGTTCATCGTGATTTCTCAAGATTTGATTTTTTTTTTTTTTT 210
Query 279 ttttgaaattttgaattttgaGATTCTGTTCCTCTTTGATCATCATCACTAGGGTTTTCT 338
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 211 TTTTGAAAATTTGAATTTTGAGATTCTGTTCCTCTTTGATCATCATCACTAGGG-TTTCT 269
Query 339 GTTTCCAGTTaaaaaaaaGTTTGGATTTTTCTTCGTATAATTTAGGAATGAGGAAGCCCA 398
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GTTTCCAG-T--AAAAAAGTTTGGATTTTTCTTCGTATAATTTAGGAATGAGGAAGCCCA 326
Query 399 AGTTGTCAAAACTCGAGAGGTTAGAGAAATTCGACATTTTCGTTTCTCTAAGCAAGCAGA 458
|||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 327 AGTTATCGAAACTCGAGAGGTTAGAGAAATTCGACATGTTCGTCTCTCTTAGCAAGCAGA 386
Query 459 GATCGGTTCAGATACTAATGGCGGTTGGGTTACTCTACATGCTTCTTATCACATTCGAAA 518
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 387 GATCTGTTCAGATACTAATGGCGGTTGGGTTACTCTACATGCTTCTAATCACATTCGAAA 446
Query 519 TCCCTTTCGTCTTCAAAACCGGGCTTAGTTCTTTATCTCAGGATCCGTTAACCCGACCCG 578
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 447 TCCCTTTCGTCTTCAAAACCGGCCTTAGTTCTTTGTCTCAGGATCCGTTAACCCGACCCG 506
Query 579 AGAAGCACAATAGTCAGA-GAGAGTTACAAGAGAGACGAGCTCCGACTCGACCTTTAAAG 637
||||||| ||||| || | |||| ||||||||| |||||||||||| ||||||||| |||
Sbjct 507 AGAAGCATAATAGCCA-ACGAGAATTACAAGAGCGACGAGCTCCGAGTCGACCTTTTAAG 565
Query 638 AGTCTGCTTTACCAGGAATCACAATCGGAATCACCGGCTCAGGGTTTAAGAAGAAGGACT 697
|||||||||||||||||||||||||||||| |||||||||| ||||||||||| || |||
Sbjct 566 AGTCTGCTTTACCAGGAATCACAATCGGAACCACCGGCTCAAGGTTTAAGAAGGAGCACT 625
Query 698 CGGATCCTT-TCTAGTTTGAGATTCGACCCGGAAACGTTTAACCCGAGTAGCAAAGATGG 756
||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 626 CGGAT-CTTATCTAGTTTGAGATTTGACCCGGAAACGTTTAACCCGAGTAGCAAAGATGG 684
Query 757 GTCTGTGGAGCTTCATAAATCTGCTAAGGTAGCTTGGGAAGTTGGTCGAAAGATATGGGA 816
||| ||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 685 GTCAGTGGAGCTTCACAAATCCGCTAAGGTAGCTTGGGAATTTGGTTGAAAGATATGGGA 744
Query 817 AGAGCTTGAGTCTGGGAAAACGTTGAAAGCTTTGGAGAAGGAGAAGAAGAAGAAGATTGA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 AGAGCTTGAGTCTGGGAAAACGTTGAAAGCTTTGGAGAAGGAGAAGAAGAAGAAGATTGA 804
Query 877 GGAACATGGGACAAACTCGTGTTCTCTCTCTGTTTCCTTAACCGGGTCTGATCTTTTGAA 936
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 805 GGAACATGGGTCAAACTCGTGCTCTCTCTCTGTTTCCTTAACCGGGTCTGATCTTTCGAA 864
Query 937 ACGTGGGAATATCATGGAGCTTCCATGTGGTTTAACTCTTGGGTCACATATTACAGTGGT 996
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 ACGTGGGAATCTCATGGAGCTTCCATGTGGTTTAACTCTTGGGTCACATATTACAGTGGT 924
Query 997 TGGGAAGCCACGAGCTGCTCATTCGGAGAAGGACCCTAAGATATCGATGTTAAAGGAAGG 1056
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 925 TGGGAAGCCAAGAGCTGCTCATTCGGAGAAGGACCCGAAGATATCGATGTTAAAGGAAGG 984
Query 1057 AGATGAAGCTGTGAAGGTTTCACAGTTTAAGTTGGAGCTTCAGGGTTTGAAAGCAGTGGA 1116
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 985 AGATGAAGCTGTTAAGGTTTCACAGTTTAAGTTGGAGCTTCAGGGTTTGAAAGCAGTTGA 1044
Query 1117 AGGAGAAGAGCCACCTCGGATACTCCACTTGAATCCAAGGCTTAAGGGTGATTGGAGTGG 1176
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1045 AGGAGAAGAGCCACCTCGGATACTCCACTTCAATCCAAGGCTTAAGGGTGATTGGAGTGG 1104
Query 1177 TAAGCCTGTGATTGAGCAGAACACTTGCTATAGAATGCAATGGGGCTCAGCACAAAGATG 1236
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1105 TAAGCCTGTCATTGAGCAGAACACTTGTTATAGAATGCAATGGGGCTCAGCACAAAGATG 1164
Query 1237 TGAAGGATGGAGATCTAGGGATGATGAAGAGACTGTTGATGGTCAGGTTAAGTGCGAGAA 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 TGAAGGATGGAGATCTAGGGATGATGAAGAGACTGTTGATGGTCAGGTTAAGTGCGAGAA 1224
Query 1297 ATGGGCTCGGGATGATAGCATTACATCTAAAGAAGAAGAGTCTAGCAAGGCGGCTTCATG 1356
||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1225 ATGGGCTCGAGATGATAGCATTACATCT--A-AAGAAGAGTCTAGCAAGGCGGCTTCATG 1281
Query 1357 GTGGCTTAGTCGATTAATAGGTCGGAGCAAGAAAGTAACTGTTGAATGGCCATTTCCATT 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GTGGCTTAGTCGATTAATAGGTCGGAGCAAGAAAGTAACTGTTGAATGGCCATTTCCATT 1341
Query 1417 CACAGTTGACAAGCTTTTCGTGCTTACTCTTAGTGCTGGATTGGAAGGCTACCATGTTAG 1476
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 1342 CACAGTTGACAAGCTTTTCGTGCTTACACTTAGTGCTGGATTGGAAGGTTATCATGTTAG 1401
Query 1477 TGTCGATGGGAAGCATGTCACTTCCTTTCCATACCGAACTGGATTTACGCTTGAGGATGC 1536
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TGTCGATGGGAAGCACGTTACATCCTTTCCATACCGAACTGGATTTACGCTTGAGGATGC 1461
Query 1537 TACTGGTCTAACCATTAACGGGGACATAGATGTTCACTCTGTTTTCGCTGGCTCTCTCCC 1596
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1462 TACTGGTCTAACCATTAACGGGGACATAGATGTTCACTCGGTTTTCGCTGGCTCTCTCCC 1521
Query 1597 AACCTCGCATCCTAGTTTTTCTCCTCAGAGGCATCTTGAGCTCTCGAGCAATTGGCAAGC 1656
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 AACCTCGCATCCTAGTTTTGCTCCTCAGAGGCATCTTGAGCTCTCGAGCAATTGGCAAGC 1581
Query 1657 CCCATCACTTCCTGATGAGCAAGTTGATATGTTCATTGGTATCCTTTCTGCTGGTAACCA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 CCCATCACTTCCTGATGAGCAAGTTGATATGTTCATTGGTATCCTTTCTGCTGGTAACCA 1641
Query 1717 TTTTGCTGAGAGGATGGCTGTGAGGAGGTCGTGGATGCAACATAAACTCGTTAAATCTTC 1776
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 TTTTGCTGAGCGGATGGCTGTGAGGAGGTCGTGGATGCAACATAAACTCGTTAAATCTTC 1701
Query 1777 CAAAGTAGTGGCTCGGTTCTTTGTTGCACTGCACTCAAGGAAAGAAGTAAATGTGGAGCT 1836
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1702 CAAAGTTGTCGCTCGGTTCTTTGTTGCACTGCACTCGAGGAAAGAAGTAAATGTGGAGCT 1761
Query 1837 AAAGAAGGAAGCTGAATTCTTTGGGGACATAGTTATAGTCCCTTACATGGACAGTTATGA 1896
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1762 AAAGAAGGAAGCTGAATTCTTTGGAGACATAGTTATAGTCCCTTACATGGACAGTTATGA 1821
Query 1897 CCTTGTCGTCCTCAAAACCGTTGCAATTTGCGAGTACGGGGCTCATCAACTTGCAGCTAA 1956
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1822 CCTTGTCGTCCTCAAAACTGTTGCAATTTGCGAGTACGGGGCTCATCAACTTGCTGCTAA 1881
Query 1957 ATTCATCATGAAGTGTGATGACGATACATTTGTACAAGTGGATGCGGTTCTTAGTGAAGC 2016
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1882 ATTCATCATGAAGTGTGATGATGATACATTTGTACAAGTGGATGCGGTTCTTAGTGAAGC 1941
Query 2017 AAAGAAAACACCCACAGATAGAAGTCTATACATTGGCAACATCAATTATTATCACAAACC 2076
|||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1942 GAAGAGAACACCTGCCGATAGAAGTCTATACATTGGCAACATCAATTATTATCACAAACC 2001
Query 2077 ACTTCGCCAGGGTAAATGGTCTGTTACATATGAGGAATGGCCAGAGGAAGACTATCCACC 2136
|| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 2002 GCTCCGCCAGGGTAAATGGGCTGTTACATATGAGGAATGGCCAGAGGAGGACTATCCACC 2061
Query 2137 TTATGCTAATGGCCCCGGATACATATTATCAAACGATATATCTCGCTTTATCGTGAAAGA 2196
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2062 TTACGCTAATGGCCCTGGATACATATTATCAAACGATATCTCTCGCTTTATCGTGAAAGA 2121
Query 2197 GTTTGAGAAACACAAATTAAGGATGTTCAAAATGGAAGATGTAAGCGTGGGAATGTGGGT 2256
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2122 GTTTGAGAAACACAAATTAAGGATGTTCAAAATGGAAGATGTAAGTGTAGGAATGTGGGT 2181
Query 2257 AGAACAATTCAACAATGGTACAAAACCGGTGGACTACATTCACAGCCTCAGGTTTTGTCA 2316
||||||||||||||| |||||||| ||||| ||||||||||| ||||||| |||||||||
Sbjct 2182 AGAACAATTCAACAACGGTACAAAGCCGGTAGACTACATTCATAGCCTCAAGTTTTGTCA 2241
Query 2317 GTTTGGTTGCATAGAGAATTACTTGACGGCGCATTATCAGTCGCCGAGACAGATGATTTG 2376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2242 GTTTGGTTGCATAGAGAATTACTTGACGGCGCATTATCAGTCGCCGAGACAGATGATTTG 2301
Query 2377 CTTGTGGGATAAGCTGGTGTTGACAGGCAAACCTCAGTGCTGCAACATGAGATGACACAT 2436
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2302 CTTGTGGGATAAGTTGGTGTTGACAGGCAAACCTCAGTGCTGCAACATGAGATGACACAT 2361
Query 2437 ACCAAATCCT-T-TT-CT-TT-GGTTTATAAAAGGAAATAGAAGTCCGAAGAGTTCtttt 2491
|||||||||| | || || || ||||||||| ||||||||||| | ||||||| | ||||
Sbjct 2362 ACCAAATCCTCTATTTCTCTTTGGTTTATAAGAGGAAATAGAAATTCGAAGAGGT-TTTT 2420
Query 2492 tttttGGGTAGTAGTTTATAGCATATAG-TTTCGGTTGTATTATATCATCTTTGATCTTT 2550
| |||| | ||| | | |||||| ||| ||||||||||||||||||| ||||||
Sbjct 2421 T----GGGTTTTTTTTT-T-G-ATATAGCTTT-GGTTGTATTATATCATCTT-GATCTTA 2471
Query 2551 AGTAACGAATCTAAAATGGATGTTTTCTTTTGGTCGAATTCTCTATTAATATTCATTCTT 2610
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 2472 AGCAACGAATCTAAAATAGATGTTTTCTTTTGGTCGAATTCTCTATTAATATTCTTTCTT 2531
Query 2611 TCC 2613
|||
Sbjct 2532 TCC 2534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98539463815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5