BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62650.1
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496448 jgi|Araly1|496448|fgenesh2_kg.8__2264__AT5G62650.1 2571 0.0
Ahg887378 jgi|Araly1|887378|Al_scaffold_0584_1 1070 0.0
Ahg358470 jgi|Araly1|358470|fgenesh1_pg.C_scaffold_8002257 379 4e-104
> Ahg496448 jgi|Araly1|496448|fgenesh2_kg.8__2264__AT5G62650.1
Length=1769
Score = 2571 bits (1392), Expect = 0.0
Identities = 1554/1630 (95%), Gaps = 20/1630 (1%)
Strand=Plus/Plus
Query 43 CCGAACAGAACAGTCAGTTTAATGGGTTCGCCGGATAAGCAACATCGCCGCCACGTCGCC 102
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCGAACCGAACAGTCAGGTTAATGGGTTCGCCGGATAAGCAACATCGCCGCCACGTCGCC 60
Query 103 GCCGAATTTCTCCATAGCGCGGTAACCTCAATCTCTTCCTCAATCATTCCTCTCTTCCCT 162
|||||||||||||| ||||| |||||||||||| |||||| ||| || |||
Sbjct 61 GCCGAATTTCTCCACAGCGCCGTAACCTCAATC-ATTCCTC--TCA------TC--CCC- 108
Query 163 CCCAAAACGGCGCCGTCTCGTGTATGCCTCCCACTTAGATTCTCGGTATCAGACGATGTC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 CCCAAAACGGCGCCGTCTCGTGTATGCCTCCCACTTAGATTCTCGGTATCAGACGATGTC 168
Query 223 TCGTCCCCTTTCGAATCGACGGTCAAGAGCACATCATCCGCGTCCTCCTCCGGCCTTAAT 282
|||||||| |||||||||||||| |||||| |||||||| |||| || ||||||||||||
Sbjct 169 TCGTCCCCATTCGAATCGACGGTGAAGAGCTCATCATCCACGTCGTCTTCCGGCCTTAAT 228
Query 283 TCAACGGTTAGGATATCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCTTTCGTC 342
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 229 TCAACGGTTAGGATTTCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCCTTCGTC 288
Query 343 GGTCAGGTGTTTAGTATGTGTGACCTTACTGGGACTGGTCTAATGGCTGTTTCTACTCAC 402
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GGCCAGGTCTTTAGTATGTGTGACCTTACTGGGACTGGTCTAATGGCTGTTTCTACTCAC 348
Query 403 TTCGATATTCCTTTCATCTCCAAGAGAACACCTGAGTGGCTAAAGAAAATGTTTTCGACT 462
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 349 TTCGATATTCCTTTCATCTCCAAGAGGACACCTGAGTGGCTAAAGAAAATGTTTTCGACT 408
Query 463 ATCACTAAGAGCGAGAGGAATGGCCCTGTGTTCCGTTTTTTCATGGATCTTGGTGATGCA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ATCACTAAGAGCGAGAGGAATGGCCCTGTGTTCCGTTTTTTCATGGATCTTGGTGATGCA 468
Query 523 GTTTCATATGTTAAAAAACTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGAT 582
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 469 GTTTCATATGTTAAAAAACTAAATATTCCAAGCGGAGTGGTTGGGGCTTGTCGACTTGAT 528
Query 583 TTGGCATATGAGCATTTCAAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGA 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TTGGCATATGAGCATTTCAAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGA 588
Query 643 CAGGTGAAGGCTGCCAACAAACTTCTCAAGTCAATGCCACA-GAATGGTA-AAACACAAA 700
||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||
Sbjct 589 CAGGTGAAGGCTGCCAACAAACTTCTCAAGTCAATGCCACAAGA-TGGTAGAAA-ACAAA 646
Query 701 AGGTGGAGGGTGTCCCTGTTTTCGGTGCTCAAAACCTGGACATTGCTGTTGCAACTGCAG 760
|||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 647 AGGTAGAGGGCGTCCCTGTTTTCGGTGCTCAAAACTTGGACATCGCTGTTGCAACTGCAG 706
Query 761 ATGGAATTAAGTGGTATACCCCATACTTCTTTGATAAAGCTGTACTTGATAACATTCTGG 820
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 707 ATGGAATTAAGTGGTATACCCCATACTTCTTTGATAAAGCTGTACTAGATAACATTCTTG 766
Query 821 AAGAGTCTGTAGATCAACATTTCCATACTTTAATCCAAACCCGGCATGTGCAACGACGAC 880
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 AAGAGTCCGTAGATCAACATTTCCATACTTTAATCCAAACCCGGCATGTGCAACGACGAC 826
Query 881 GGGATGTTGTTGACGATAGTTTAGCTTCAGAGGTTATGGAAGAGATGGGAGATAGCATGC 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GGGATGTTGTTGACGATAGTTTAGCTTCAGAGGTTATGGAAGAGATGGGAGATAGCATGC 886
Query 941 TAGAGCCGCCAGAGGTTCAAGAAGCCATGGAGGAGATTGGCACTTCCGGAATTCCTTTGA 1000
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 887 TAGAGCCGCCAGAGGTTCAAGAAGCCATGGAGGAGATTGGCAGTTCCGGAATTCCTTTGA 946
Query 1001 GTGTTGTGGCAAAGGCTGCAGAGATTCAGCTCCTATATGCCGTTGACAGAGTACTTTTAG 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GTGTTGTGGCAAAGGCTGCAGAGATTCAGCTCCTATATGCCGTTGACAGAGTACTTTTAG 1006
Query 1061 GTAGTAGATGGTTTCGAAAAGCCACGGGTATCCAGCCAAAGTTACCTTATTTGGTCGATT 1120
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1007 GCAGTAGATGGTTTCGAAAAGCCACGGGTATTCAGCCAAAGTTACCTTATTTGGTTGATT 1066
Query 1121 CTTTTGAAAGAAGGAGTGCATTTTCTATCCAAAGAGCGTCAGGGTCAGCAACAAGATGTC 1180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1067 CTTTTGAAAGAAGGAGTGCATTTTCTATCCAAAGAGCGTCAGGGTCAGCAACTAGATGTC 1126
Query 1181 TTGGTGATTCAGTAGAAGCAGATACTTCCGCATCACTACTTAGAGTAGAAGATGATAGTC 1240
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1127 TTGGTGATTCAGTAGAAGCAGATACTTCCGCATCACTGCTTAGAGTAGAAGATAATAGTC 1186
Query 1241 CAAGTGAAG-CTGAAAAGAGACAGCAACATCTCTGGTTTCCTTTTGGAGATTGGATCAGT 1299
|||| |||| | ||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 1187 CAAGCGAAGAC-GAAAAGAGACAGCAAAATCTCTGGTTTCCTTTTGGAGATTGGATTAAT 1245
Query 1300 CACTCTGTATC-AAGAAAAGAACACACACATCACAAGGGTTCATCAGATCAAAGGGATAT 1358
||||||| ||| || |||||||||||| ||||| |||||| |||||||| |||||||||
Sbjct 1246 CACTCTGAATCGAA-AAAAGAACACACTCATCATAAGGGTCCATCAGATGGAAGGGATAT 1304
Query 1359 GGAATCTAGAGAAAGAGAAATGCTGCGAAGTCCATTCTTACCAAAGATAACAATGGTAGG 1418
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1305 GGAATCTAGAGAGAGAGAAATGCTGCGAAGTCCTTTCTTACCAAAGATAACAATGGTAGG 1364
Query 1419 GATTTCAACAGGAGAAGCTGCACAGATGAGTAAGGCTAATCTCAAGAAAACAATGGAAGA 1478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1365 GATTTCAACAGGAGAAGCTGCACAAATGAGTAAGGCTAATCTCAAGAAAACAATGGAAGA 1424
Query 1479 TTTAACAGAAGACTTGGAGCAATCTGATGAAGGGAACGATCATGGTTCAAAACGTTACGA 1538
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1425 TTTAACAGAAGACTTGGAGCAATCTGATGAAGGGAATGATCATGGTTCGAAACGTTATGA 1484
Query 1539 CTCTCTAAAGATTGAAGAGAGAGATCCTCTATTTGTTGCAAACGTCGGAGACTACTATTC 1598
| ||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1485 CCCTCGAAAGATGGAAGAGAGAGATCCTCTTTTTGTTGCAAACGTCGGAGATTACTATTC 1544
Query 1599 GGGTTTGGCTAAAGCTGGTTCTGCTCGGTTGTCACGTAGAGGTGATGACCAGTAACGAAA 1658
|||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1545 GGGTATGGCGAAAGCTGGTTCTGCTCGGTTGTCACGTCGAGGGGATGACCAGTAACGAAA 1604
Query 1659 CACATCCTAT 1668
||||||||||
Sbjct 1605 CACATCCTAT 1614
Score = 56.5 bits (30), Expect = 7e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 1684 TTGTGTGAATTGCTCAAGCCTAGTTACTTATTGT 1717
||||||||||||||||||||||||||||| ||||
Sbjct 1614 TTGTGTGAATTGCTCAAGCCTAGTTACTT-TTGT 1646
> Ahg887378 jgi|Araly1|887378|Al_scaffold_0584_1
Length=687
Score = 1070 bits (579), Expect = 0.0
Identities = 653/689 (95%), Gaps = 4/689 (1%)
Strand=Plus/Plus
Query 967 ATGGAGGAGATTGGCACTTCCGGAATTCCTTTGAGTGTTGTGGCAAAGGCTGCAGAGATT 1026
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGATTGGCAGTTCCGGAATTCCTTTGAGTGTTGTGGCAAAGGCTGCAGAGATT 60
Query 1027 CAGCTCCTATATGCCGTTGACAGAGTACTTTTAGGTAGTAGATGGTTTCGAAAAGCCACG 1086
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CAGCTCCTATATGCCGTTGACAGAGTACTTTTAGGCAGTAGATGGTTTCGAAAAGCCACG 120
Query 1087 GGTATCCAGCCAAAGTTACCTTATTTGGTCGATTCTTTTGAAAGAAGGAGTGCATTTTCT 1146
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GGTATTCAGCCAAAGTTACCTTATTTGGTTGATTCTTTTGAAAGAAGGAGTGCATTTTCT 180
Query 1147 ATCCAAAGAGCGTCAGGGTCAGCAACAAGATGTCTTGGTGATTCAGTAGAAGCAGATACT 1206
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ATCCAAAGAGCGTCAGGGTCAGCAACTAGATGTCTTGGTGATTCAGTAGAAGCAGATACT 240
Query 1207 TCCGCATCACTACTTAGAGTAGAAGATGATAGTCCAAGTGAAG-CTGAAAAGAGACAGCA 1265
||||||||||| ||||||||||||||| |||||||||| |||| | ||||||||||||||
Sbjct 241 TCCGCATCACTGCTTAGAGTAGAAGATAATAGTCCAAGCGAAGAC-GAAAAGAGACAGCA 299
Query 1266 ACATCTCTGGTTTCCTTTTGGAGATTGGATCAGTCACTCTGTATC-AAGAAAAGAACACA 1324
| |||||||||||||||||||||||||||| | |||||||| ||| || |||||||||||
Sbjct 300 AAATCTCTGGTTTCCTTTTGGAGATTGGATTAATCACTCTGAATCGAA-AAAAGAACACA 358
Query 1325 CACATCACAAGGGTTCATCAGATCAAAGGGATATGGAATCTAGAGAAAGAGAAATGCTGC 1384
| ||||| |||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 359 CTCATCATAAGGGTCCATCAGATGGAAGGGATATGGAATCTAGAGAGAGAGAAATGCTGC 418
Query 1385 GAAGTCCATTCTTACCAAAGATAACAATGGTAGGGATTTCAACAGGAGAAGCTGCACAGA 1444
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 GAAGTCCTTTCTTACCAAAGATAACAATGGTAGGGATTTCAACAGGAGAAGCTGCACAAA 478
Query 1445 TGAGTAAGGCTAATCTCAAGAAAACAATGGAAGATTTAACAGAAGACTTGGAGCAATCTG 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGAGTAAGGCTAATCTCAAGAAAACAATGGAAGATTTAACAGAAGACTTGGAGCAATCTG 538
Query 1505 ATGAAGGGAACGATCATGGTTCAAAACGTTACGACTCTCTAAAGATTGAAGAGAGAGATC 1564
|||||||||| ||||||||||| |||||||| ||| ||| |||||| |||||||||||||
Sbjct 539 ATGAAGGGAATGATCATGGTTCGAAACGTTATGACCCTCGAAAGATGGAAGAGAGAGATC 598
Query 1565 CTCTATTTGTTGCAAACGTCGGAGACTACTATTCGGGTTTGGCTAAAGCTGGTTCTGCTC 1624
|||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 599 CTCTTTTTGTTGCAAACGTCGGAGATTACTATTCGGGTATGGCGAAAGCTGGTTCTGCTC 658
Query 1625 GGTTGTCACGTAGAGGTGATGACCAGTAA 1653
||||||||||| |||| ||||||||||||
Sbjct 659 GGTTGTCACGTCGAGGGGATGACCAGTAA 687
> Ahg358470 jgi|Araly1|358470|fgenesh1_pg.C_scaffold_8002257
Length=1671
Score = 379 bits (205), Expect = 4e-104
Identities = 219/225 (97%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 482 ATGGCCCTGT-GTTCCGTTTTTTCATGGATCTTGGTGATGCAGTTTCATATGTTAAAAAA 540
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCCCTGTGGTTTCGTTTTTTCATGGATCTTGGCGATGCAGTTTCATATGTTAAAAAA 60
Query 541 CTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGATTTGGCATATGAGCATTTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGATTTGGCATATGAGCATTTC 120
Query 601 AAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGGTGAAGGCTGCCAAC 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGAGAAGCCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGGTGAAGGCTGCCAAC 180
Query 661 AAACTTCTCAAGTCAATGCCACAGAATGGTAA-AACACAAAAGGT 704
|||||||||||||||||||||||||||||||| || |||||||||
Sbjct 181 AAACTTCTCAAGTCAATGCCACAGAATGGTAATAA-ACAAAAGGT 224
Score = 130 bits (70), Expect = 4e-29
Identities = 82/88 (93%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 294 GATATCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCTTTCGTCGGTCAGGTGTT 353
||| |||||||||| |||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 372 GATTTCATCTCTCATCTCCGATGGGAAACGCGGTGGACCGGCCTTCGTCGGCCAGGTCTT 431
Query 354 TAGTATGTGTGACCTTACTGGGACTGGT 381
||||||||||||||||||||||||||||
Sbjct 432 TAGTATGTGTGACCTTACTGGGACTGGT 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71419209375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5