BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62650.1 Length=1901 Score E Sequences producing significant alignments: (Bits) Value Ahg496448 jgi|Araly1|496448|fgenesh2_kg.8__2264__AT5G62650.1 2571 0.0 Ahg887378 jgi|Araly1|887378|Al_scaffold_0584_1 1070 0.0 Ahg358470 jgi|Araly1|358470|fgenesh1_pg.C_scaffold_8002257 379 4e-104 > Ahg496448 jgi|Araly1|496448|fgenesh2_kg.8__2264__AT5G62650.1 Length=1769 Score = 2571 bits (1392), Expect = 0.0 Identities = 1554/1630 (95%), Gaps = 20/1630 (1%) Strand=Plus/Plus Query 43 CCGAACAGAACAGTCAGTTTAATGGGTTCGCCGGATAAGCAACATCGCCGCCACGTCGCC 102 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCGAACCGAACAGTCAGGTTAATGGGTTCGCCGGATAAGCAACATCGCCGCCACGTCGCC 60 Query 103 GCCGAATTTCTCCATAGCGCGGTAACCTCAATCTCTTCCTCAATCATTCCTCTCTTCCCT 162 |||||||||||||| ||||| |||||||||||| |||||| ||| || ||| Sbjct 61 GCCGAATTTCTCCACAGCGCCGTAACCTCAATC-ATTCCTC--TCA------TC--CCC- 108 Query 163 CCCAAAACGGCGCCGTCTCGTGTATGCCTCCCACTTAGATTCTCGGTATCAGACGATGTC 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 109 CCCAAAACGGCGCCGTCTCGTGTATGCCTCCCACTTAGATTCTCGGTATCAGACGATGTC 168 Query 223 TCGTCCCCTTTCGAATCGACGGTCAAGAGCACATCATCCGCGTCCTCCTCCGGCCTTAAT 282 |||||||| |||||||||||||| |||||| |||||||| |||| || |||||||||||| Sbjct 169 TCGTCCCCATTCGAATCGACGGTGAAGAGCTCATCATCCACGTCGTCTTCCGGCCTTAAT 228 Query 283 TCAACGGTTAGGATATCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCTTTCGTC 342 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 229 TCAACGGTTAGGATTTCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCCTTCGTC 288 Query 343 GGTCAGGTGTTTAGTATGTGTGACCTTACTGGGACTGGTCTAATGGCTGTTTCTACTCAC 402 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 GGCCAGGTCTTTAGTATGTGTGACCTTACTGGGACTGGTCTAATGGCTGTTTCTACTCAC 348 Query 403 TTCGATATTCCTTTCATCTCCAAGAGAACACCTGAGTGGCTAAAGAAAATGTTTTCGACT 462 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 349 TTCGATATTCCTTTCATCTCCAAGAGGACACCTGAGTGGCTAAAGAAAATGTTTTCGACT 408 Query 463 ATCACTAAGAGCGAGAGGAATGGCCCTGTGTTCCGTTTTTTCATGGATCTTGGTGATGCA 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 ATCACTAAGAGCGAGAGGAATGGCCCTGTGTTCCGTTTTTTCATGGATCTTGGTGATGCA 468 Query 523 GTTTCATATGTTAAAAAACTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGAT 582 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 469 GTTTCATATGTTAAAAAACTAAATATTCCAAGCGGAGTGGTTGGGGCTTGTCGACTTGAT 528 Query 583 TTGGCATATGAGCATTTCAAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGA 642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 TTGGCATATGAGCATTTCAAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGA 588 Query 643 CAGGTGAAGGCTGCCAACAAACTTCTCAAGTCAATGCCACA-GAATGGTA-AAACACAAA 700 ||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||| Sbjct 589 CAGGTGAAGGCTGCCAACAAACTTCTCAAGTCAATGCCACAAGA-TGGTAGAAA-ACAAA 646 Query 701 AGGTGGAGGGTGTCCCTGTTTTCGGTGCTCAAAACCTGGACATTGCTGTTGCAACTGCAG 760 |||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 647 AGGTAGAGGGCGTCCCTGTTTTCGGTGCTCAAAACTTGGACATCGCTGTTGCAACTGCAG 706 Query 761 ATGGAATTAAGTGGTATACCCCATACTTCTTTGATAAAGCTGTACTTGATAACATTCTGG 820 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 707 ATGGAATTAAGTGGTATACCCCATACTTCTTTGATAAAGCTGTACTAGATAACATTCTTG 766 Query 821 AAGAGTCTGTAGATCAACATTTCCATACTTTAATCCAAACCCGGCATGTGCAACGACGAC 880 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 767 AAGAGTCCGTAGATCAACATTTCCATACTTTAATCCAAACCCGGCATGTGCAACGACGAC 826 Query 881 GGGATGTTGTTGACGATAGTTTAGCTTCAGAGGTTATGGAAGAGATGGGAGATAGCATGC 940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 827 GGGATGTTGTTGACGATAGTTTAGCTTCAGAGGTTATGGAAGAGATGGGAGATAGCATGC 886 Query 941 TAGAGCCGCCAGAGGTTCAAGAAGCCATGGAGGAGATTGGCACTTCCGGAATTCCTTTGA 1000 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 887 TAGAGCCGCCAGAGGTTCAAGAAGCCATGGAGGAGATTGGCAGTTCCGGAATTCCTTTGA 946 Query 1001 GTGTTGTGGCAAAGGCTGCAGAGATTCAGCTCCTATATGCCGTTGACAGAGTACTTTTAG 1060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 947 GTGTTGTGGCAAAGGCTGCAGAGATTCAGCTCCTATATGCCGTTGACAGAGTACTTTTAG 1006 Query 1061 GTAGTAGATGGTTTCGAAAAGCCACGGGTATCCAGCCAAAGTTACCTTATTTGGTCGATT 1120 | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1007 GCAGTAGATGGTTTCGAAAAGCCACGGGTATTCAGCCAAAGTTACCTTATTTGGTTGATT 1066 Query 1121 CTTTTGAAAGAAGGAGTGCATTTTCTATCCAAAGAGCGTCAGGGTCAGCAACAAGATGTC 1180 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1067 CTTTTGAAAGAAGGAGTGCATTTTCTATCCAAAGAGCGTCAGGGTCAGCAACTAGATGTC 1126 Query 1181 TTGGTGATTCAGTAGAAGCAGATACTTCCGCATCACTACTTAGAGTAGAAGATGATAGTC 1240 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 1127 TTGGTGATTCAGTAGAAGCAGATACTTCCGCATCACTGCTTAGAGTAGAAGATAATAGTC 1186 Query 1241 CAAGTGAAG-CTGAAAAGAGACAGCAACATCTCTGGTTTCCTTTTGGAGATTGGATCAGT 1299 |||| |||| | ||||||||||||||| |||||||||||||||||||||||||||| | | Sbjct 1187 CAAGCGAAGAC-GAAAAGAGACAGCAAAATCTCTGGTTTCCTTTTGGAGATTGGATTAAT 1245 Query 1300 CACTCTGTATC-AAGAAAAGAACACACACATCACAAGGGTTCATCAGATCAAAGGGATAT 1358 ||||||| ||| || |||||||||||| ||||| |||||| |||||||| ||||||||| Sbjct 1246 CACTCTGAATCGAA-AAAAGAACACACTCATCATAAGGGTCCATCAGATGGAAGGGATAT 1304 Query 1359 GGAATCTAGAGAAAGAGAAATGCTGCGAAGTCCATTCTTACCAAAGATAACAATGGTAGG 1418 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1305 GGAATCTAGAGAGAGAGAAATGCTGCGAAGTCCTTTCTTACCAAAGATAACAATGGTAGG 1364 Query 1419 GATTTCAACAGGAGAAGCTGCACAGATGAGTAAGGCTAATCTCAAGAAAACAATGGAAGA 1478 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1365 GATTTCAACAGGAGAAGCTGCACAAATGAGTAAGGCTAATCTCAAGAAAACAATGGAAGA 1424 Query 1479 TTTAACAGAAGACTTGGAGCAATCTGATGAAGGGAACGATCATGGTTCAAAACGTTACGA 1538 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 1425 TTTAACAGAAGACTTGGAGCAATCTGATGAAGGGAATGATCATGGTTCGAAACGTTATGA 1484 Query 1539 CTCTCTAAAGATTGAAGAGAGAGATCCTCTATTTGTTGCAAACGTCGGAGACTACTATTC 1598 | ||| |||||| ||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1485 CCCTCGAAAGATGGAAGAGAGAGATCCTCTTTTTGTTGCAAACGTCGGAGATTACTATTC 1544 Query 1599 GGGTTTGGCTAAAGCTGGTTCTGCTCGGTTGTCACGTAGAGGTGATGACCAGTAACGAAA 1658 |||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1545 GGGTATGGCGAAAGCTGGTTCTGCTCGGTTGTCACGTCGAGGGGATGACCAGTAACGAAA 1604 Query 1659 CACATCCTAT 1668 |||||||||| Sbjct 1605 CACATCCTAT 1614 Score = 56.5 bits (30), Expect = 7e-07 Identities = 33/34 (97%), Gaps = 1/34 (3%) Strand=Plus/Plus Query 1684 TTGTGTGAATTGCTCAAGCCTAGTTACTTATTGT 1717 ||||||||||||||||||||||||||||| |||| Sbjct 1614 TTGTGTGAATTGCTCAAGCCTAGTTACTT-TTGT 1646 > Ahg887378 jgi|Araly1|887378|Al_scaffold_0584_1 Length=687 Score = 1070 bits (579), Expect = 0.0 Identities = 653/689 (95%), Gaps = 4/689 (1%) Strand=Plus/Plus Query 967 ATGGAGGAGATTGGCACTTCCGGAATTCCTTTGAGTGTTGTGGCAAAGGCTGCAGAGATT 1026 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGGAGATTGGCAGTTCCGGAATTCCTTTGAGTGTTGTGGCAAAGGCTGCAGAGATT 60 Query 1027 CAGCTCCTATATGCCGTTGACAGAGTACTTTTAGGTAGTAGATGGTTTCGAAAAGCCACG 1086 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 CAGCTCCTATATGCCGTTGACAGAGTACTTTTAGGCAGTAGATGGTTTCGAAAAGCCACG 120 Query 1087 GGTATCCAGCCAAAGTTACCTTATTTGGTCGATTCTTTTGAAAGAAGGAGTGCATTTTCT 1146 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 GGTATTCAGCCAAAGTTACCTTATTTGGTTGATTCTTTTGAAAGAAGGAGTGCATTTTCT 180 Query 1147 ATCCAAAGAGCGTCAGGGTCAGCAACAAGATGTCTTGGTGATTCAGTAGAAGCAGATACT 1206 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 ATCCAAAGAGCGTCAGGGTCAGCAACTAGATGTCTTGGTGATTCAGTAGAAGCAGATACT 240 Query 1207 TCCGCATCACTACTTAGAGTAGAAGATGATAGTCCAAGTGAAG-CTGAAAAGAGACAGCA 1265 ||||||||||| ||||||||||||||| |||||||||| |||| | |||||||||||||| Sbjct 241 TCCGCATCACTGCTTAGAGTAGAAGATAATAGTCCAAGCGAAGAC-GAAAAGAGACAGCA 299 Query 1266 ACATCTCTGGTTTCCTTTTGGAGATTGGATCAGTCACTCTGTATC-AAGAAAAGAACACA 1324 | |||||||||||||||||||||||||||| | |||||||| ||| || ||||||||||| Sbjct 300 AAATCTCTGGTTTCCTTTTGGAGATTGGATTAATCACTCTGAATCGAA-AAAAGAACACA 358 Query 1325 CACATCACAAGGGTTCATCAGATCAAAGGGATATGGAATCTAGAGAAAGAGAAATGCTGC 1384 | ||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 359 CTCATCATAAGGGTCCATCAGATGGAAGGGATATGGAATCTAGAGAGAGAGAAATGCTGC 418 Query 1385 GAAGTCCATTCTTACCAAAGATAACAATGGTAGGGATTTCAACAGGAGAAGCTGCACAGA 1444 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 419 GAAGTCCTTTCTTACCAAAGATAACAATGGTAGGGATTTCAACAGGAGAAGCTGCACAAA 478 Query 1445 TGAGTAAGGCTAATCTCAAGAAAACAATGGAAGATTTAACAGAAGACTTGGAGCAATCTG 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TGAGTAAGGCTAATCTCAAGAAAACAATGGAAGATTTAACAGAAGACTTGGAGCAATCTG 538 Query 1505 ATGAAGGGAACGATCATGGTTCAAAACGTTACGACTCTCTAAAGATTGAAGAGAGAGATC 1564 |||||||||| ||||||||||| |||||||| ||| ||| |||||| ||||||||||||| Sbjct 539 ATGAAGGGAATGATCATGGTTCGAAACGTTATGACCCTCGAAAGATGGAAGAGAGAGATC 598 Query 1565 CTCTATTTGTTGCAAACGTCGGAGACTACTATTCGGGTTTGGCTAAAGCTGGTTCTGCTC 1624 |||| |||||||||||||||||||| |||||||||||| |||| |||||||||||||||| Sbjct 599 CTCTTTTTGTTGCAAACGTCGGAGATTACTATTCGGGTATGGCGAAAGCTGGTTCTGCTC 658 Query 1625 GGTTGTCACGTAGAGGTGATGACCAGTAA 1653 ||||||||||| |||| |||||||||||| Sbjct 659 GGTTGTCACGTCGAGGGGATGACCAGTAA 687 > Ahg358470 jgi|Araly1|358470|fgenesh1_pg.C_scaffold_8002257 Length=1671 Score = 379 bits (205), Expect = 4e-104 Identities = 219/225 (97%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 482 ATGGCCCTGT-GTTCCGTTTTTTCATGGATCTTGGTGATGCAGTTTCATATGTTAAAAAA 540 |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGGCCCTGTGGTTTCGTTTTTTCATGGATCTTGGCGATGCAGTTTCATATGTTAAAAAA 60 Query 541 CTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGATTTGGCATATGAGCATTTC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGATTTGGCATATGAGCATTTC 120 Query 601 AAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGGTGAAGGCTGCCAAC 660 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAGGAGAAGCCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGGTGAAGGCTGCCAAC 180 Query 661 AAACTTCTCAAGTCAATGCCACAGAATGGTAA-AACACAAAAGGT 704 |||||||||||||||||||||||||||||||| || ||||||||| Sbjct 181 AAACTTCTCAAGTCAATGCCACAGAATGGTAATAA-ACAAAAGGT 224 Score = 130 bits (70), Expect = 4e-29 Identities = 82/88 (93%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 294 GATATCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCTTTCGTCGGTCAGGTGTT 353 ||| |||||||||| |||||||||||||||||||||||| || |||||||| ||||| || Sbjct 372 GATTTCATCTCTCATCTCCGATGGGAAACGCGGTGGACCGGCCTTCGTCGGCCAGGTCTT 431 Query 354 TAGTATGTGTGACCTTACTGGGACTGGT 381 |||||||||||||||||||||||||||| Sbjct 432 TAGTATGTGTGACCTTACTGGGACTGGT 459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71419209375 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5