BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62660.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358470 jgi|Araly1|358470|fgenesh1_pg.C_scaffold_8002257 1260 0.0
Ahg358465 jgi|Araly1|358465|fgenesh1_pg.C_scaffold_8002252 845 0.0
Ahg918030 jgi|Araly1|918030|Al_scaffold_0008_2781 684 0.0
Ahg358451 jgi|Araly1|358451|fgenesh1_pg.C_scaffold_8002238 497 6e-140
Ahg951049 jgi|Araly1|951049|scaffold_802936.1 361 8e-99
> Ahg358470 jgi|Araly1|358470|fgenesh1_pg.C_scaffold_8002257
Length=1671
Score = 1260 bits (682), Expect = 0.0
Identities = 930/1048 (89%), Gaps = 23/1048 (2%)
Strand=Plus/Plus
Query 40 AAGACGAGGTCTTCAAAGGTGATGTTGagaagaggaagaaaaagaaga-agaagaataga 98
|||| |||||| ||||| || | | ||||||||||||| ||||||| | |||| |||
Sbjct 625 AAGAAGAGGTCGTCAAA---GACGATAAGAAGAGGAAGAAGAAGAAGACA-AAGAGGAGA 680
Query 99 agaCGCTTTGGTCGCGCCGGAGATCCCTCTCGATCTACTGATCGAGATTCTGACTAAATT 158
| | ||| || || |||||||| ||| | ||||||||||||||||||||||||| |||
Sbjct 681 ATATTTTTTTGTGGCACCGGAGATTCCTTTGGATCTACTGATCGAGATTCTGACTAGATT 740
Query 159 GCCTGCTAAATCTCTTATGAGATTCAAGTGCGTCTCAAAGTTATGGTCTTCTCTTATCCG 218
|||||||||||| ||| |||| ||||||||| |||||||| ||||||||||||||||| |
Sbjct 741 GCCTGCTAAATCGCTTTTGAGGTTCAAGTGCATCTCAAAGCTATGGTCTTCTCTTATCTG 800
Query 219 TTCCCGATTTTTTAGCAACT-GTTATCTTACGGTCAAAACTCCACGGCGACCACCTCGTC 277
|||||||||||||||||| | |||||| ||||||| | | |||| ||||||||||||||
Sbjct 801 TTCCCGATTTTTTAGCAA-TCGTTATCATACGGTCGCATCCCCACTGCGACCACCTCGTC 859
Query 278 TATACATGAGTTTGGTAG-ACCACCTCTTGTGTAATTCACT-GATGGTTTG-C-C-ACTA 332
|||||||||||||||| | |||||||| ||||||||||| | || |||||| | | || |
Sbjct 860 TATACATGAGTTTGGT-GTACCACCTCGTGTGTAATTCAATGGA-GGTTTGCCACAACCA 917
Query 333 CCCATGTGAGTCTGTACTGCTG---TCGTCTAGTAGCAGTGCTGAGTCTTTGGAACAAAA 389
||| ||||||||||| ||||| || |||||||||||||||||||||||||||||| |
Sbjct 918 CCCCCGTGAGTCTGTATTGCTGTCATCTTCTAGTAGCAGTGCTGAGTCTTTGGAACAAGA 977
Query 390 TTTGACAATTGCAGGGATGGGAGGACGCAACATGGTGGTTCTTCGCGGCTTGATTCTATA 449
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TTTGACACTTGCAGGGATGGGAGGACGCAACATGGTGGTTCTTCGCGGCTTGATTCTATA 1037
Query 450 CGTTGTTTGCAGAACGGCGTCTATCTATAATCCCACCACCAGACAAAGTGTAACCTTACC 509
| |||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1038 CAATGTTTGTAGAAAGGCGTGTATCTATAATCCCACCACCACACAAAGTGTAACCTTACC 1097
Query 510 TGCTGTCAAATCCAACATCCTTGCTCAAAAATCCCACTGGAATAGTCTCCTCTACTTTTT 569
||||||||||||||||||| ||||||| ||| | || || ||| |||||||||||||
Sbjct 1098 TGCTGTCAAATCCAACATCTTTGCTCACGAATACTACAATAAGAGTGTCCTCTACTTTTT 1157
Query 570 CGGATACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTGTTGCACTATTCTCAAA 629
||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1158 TGGACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTGTTGCAGTATCCTCAAA 1217
Query 630 AAG-GCTTAAGAGGATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCAGGAGGTTCGT 688
|| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1218 AAAAG-TTAAGAGGATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCTGGAGGTTCGT 1276
Query 689 GGAAAAGAATTGAATTCGATCAACCTCATCTCCCTACGAGACTAGGATTGTGCGTCAATG 748
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1277 GGAAAAGAATTGAGTTCGATCAACCTCATCTCCCTACGAGACTAGGATTGTGCATCAAGG 1336
Query 749 GAGTTATATATTATTTGGCTTCCACTTGGAAGCGTCGTGATATCGTTGTCAGTTTTGACG 808
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 1337 GAGTTATATATTATTTGGCTTCCACTTGTAAGCGTCGCGATATCGTTGTCAGTTTTGATG 1396
Query 809 TTCGGTCTGAAGAGTTCAGTATGATCCAAGGACCTCTTAAGGTGTCTGCATTTTCTGAGT 868
|||||||||||||||||||||||||||||||||||| | |||| |||| | | ||||
Sbjct 1397 TTCGGTCTGAAGAGTTCAGTATGATCCAAGGACCTCCTGTGGTGCCTGCGTATGGTGAGC 1456
Query 869 CTGTGGGATTTATAGAGTATGGTGGAAAACCAGCTGTTTTTGATTATACCATGATGAAAC 928
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||
Sbjct 1457 CTGTGGGATTTATAGAGTATGGTGGAAAACCAGCTGTTGTTGATCATACCATTTTGGAAC 1516
Query 929 AAACGGGTTTGGTGGACTTGTGGGTCTTGGAAGATGCTGGAAAATGGTCAAGGAAATCTC 988
|||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1517 AAACAGGTTTAGTGGACTTATGGGTTTTGGAAGATGCTGGAAAATGGTCGAGGAAATCTC 1576
Query 989 TGGTTTTGCAGCCTTGTCAGATGCATTTAGTCGATAATGACATTG-AGTTTAATG-TGGA 1046
| ||||||||||||||||||||||| ||||| ||||| ||||| | || | || || |
Sbjct 1577 TCGTTTTGCAGCCTTGTCAGATGCACTTAGTAGATAACAACATTCCA-TTGA-TGGTGCA 1634
Query 1047 AGGTACAACTCAAAACGGCGAGGTTATC 1074
||||||||||||||||||||||||||||
Sbjct 1635 AGGTACAACTCAAAACGGCGAGGTTATC 1662
> Ahg358465 jgi|Araly1|358465|fgenesh1_pg.C_scaffold_8002252
Length=1428
Score = 845 bits (457), Expect = 0.0
Identities = 812/977 (83%), Gaps = 50/977 (5%)
Strand=Plus/Plus
Query 85 agaagaagaatagaagaCGCTTTGG-TCGCGCCGGAGATCCCTCTCGATCTACTGATCGA 143
||||||||| || |||| |||| |||| ||||||| ||| | ||||| | ||||||
Sbjct 4 AGAAGAAGACGAGGGGACG-ATTGGTTCGCATCGGAGATTCCTTTGGATCTCCAGATCGA 62
Query 144 GATTCTGACTAAATTGCCTGCTAAATCTCTTATGAGATTCAAGTGCGTCTCAAAGTTATG 203
|||||||| || ||||||||||||||| || ||||| ||||||||||| |||||| | ||
Sbjct 63 GATTCTGATTAGATTGCCTGCTAAATCGCTGATGAGGTTCAAGTGCGTTTCAAAGCTCTG 122
Query 204 GTCTTCTCTTATCCGTTCCCGATTTTTTAGCAACT-GTTATCTTACGGTCAAAACTCCAC 262
|| |||||||||||||| |||| ||||||||| | ||||||||||||| | ||||
Sbjct 123 GTTTTCTCTTATCCGTTGTCGATATTTTAGCAA-TCGTTATCTTACGGTGGCTTCCCCAC 181
Query 263 GGCGACCACCTCGTCTATACATGAGTTTGGTAGACCACCTCTTGTGTAATTCACT-GATG 321
|||| ||||||||||||||||||||||||| |||||| || |||||||||| | ||
Sbjct 182 CGCGAGCACCTCGTCTATACATGAGTTTGGTGGACCACATCCAGTGTAATTCAATGGA-A 240
Query 322 GTTTGCCACT-ACCCAT-GTGAGTCTGTACTGCTGTC---GTC-T-A--G--TAG--CAG 368
|| ||| | | |||| | | ||||||||| |||| || || | | | ||| | |
Sbjct 241 GTCTGCTA-TAACCC-TCGCGAGTCTGTATTGCTATCATTATCATCATCGTCTAGTACTG 298
Query 369 -TGCTGAGTCTTTGGAACAAAATTTGACAATTG-CAGGGATGGGAGGACGCAACATGGTG 426
||| ||||||| | ||| ||||||||| || ||||||||||||||||||||||| ||
Sbjct 299 ATGCAAAGTCTTTCCACCAAGATTTGACAA-TGCCAGGGATGGGAGGACGCAACATGATG 357
Query 427 GTTCTTCGCGGCTTGATTCTATACGTTGTTTGCAGAACGGCGTCTATCTATAATCCCACC 486
||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 358 ATTCTTCGCGGCTTGATTCTATACATTGTTTGCAGAAAGGCGTGTATCTATAATCCCACC 417
Query 487 ACCAGACAAAGTGTAACCTTACCTGCTGTCAAATCCAACATCCTTGCTCAA-AA-A-TCC 543
||||||||| ||||||||||||| || ||| |||||||||| |||||||| || | |
Sbjct 418 ACCAGACAATGTGTAACCTTACCCGCCGTCCAATCCAACATTTTTGCTCAAGAAGATTAT 477
Query 544 CACTGGAATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGATCAATACAAAGTA 603
|| | || ||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 478 CA-T--AAGAGTGTCCTCTACTTTTTAGGACACGATCCTGTTCTTGATCAATACAAAGTA 534
Query 604 GTTTGCACTGTTGCACTATTCTCAAAAAGGCTTAAGAGGATAACCTCAGAGCATTGGGTC 663
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 535 GTTTGCACTGTTGCAGTATCCTCAAAAAGGTTTAAGAGGATAACCTCAGAGCATTGGGTC 594
Query 664 TTCGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAACCTCATC-TCCC 722
|||||||||||||| ||||||||||||||||||||||| || |||| ||||||| |||
Sbjct 595 TTCGTACTAGAACCCGGAGGTTCGTGGAAAAGAATTGAGTTTGATCTACCTCATTGTCC- 653
Query 723 TACGA-GACTAGGATTGTGCGTCAATGGAGTTATATATTATTTGGCTTCCACTTGGAAG- 780
| | | |||||||| ||||| |||| ||||| ||||||| |||||||||| |||| | |
Sbjct 654 TGC-ACGACTAGGACTGTGCATCAACGGAGTCATATATTTTTTGGCTTCCGCTTGTATGT 712
Query 781 CGTCGTGATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATG-ATCCAAGG 839
| | | |||||| ||||||||||||| ||| |||||||||||||| ||| ||||||||
Sbjct 713 C-TAGCGATATCCTTGTCAGTTTTGATGTTATGTCTGAAGAGTTCAA-ATGGATCCAAGG 770
Query 840 ACCTCTTAAGGTGTCTGCATTTTCTGAGTCTGTGGGATTTATAGAGTATGGTGGAAAACC 899
||||| | | |||||||||| || | |||| |||||||||||| |||||||||
Sbjct 771 ACCTCCTGTCGCGTCTGCATTTA---AGCCCATGGGTTTTATAGAGTATCTTGGAAAACC 827
Query 900 AGCTGTTTTTGATTATACC-ATGATGAAAC--AAACGGGTTTGGTGGACTTGTGGGTCTT 956
| ||||||||||| || || || | |||| ||| || || |||||||| ||||||||
Sbjct 828 ATCTGTTTTTGATCATTCCCATCTT-AAACGCAAA-GG-TTCCGTGGACTTATGGGTCTT 884
Query 957 GGAAGATGCTGGAAAATGGTC-AAGGAAATCTCTGGTTTTGCAGCCTTGTCAGATGCATT 1015
||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 885 GGAAGATGCTGGAAAATGGTCGAAG-AAATCCCTGGTTTTGCAGCCTTGTCAGATGCATT 943
Query 1016 TAGTCGATAATGACATT 1032
|||| ||||| || |||
Sbjct 944 TAGTTGATAA-GAAATT 959
Score = 311 bits (168), Expect = 8e-84
Identities = 359/448 (80%), Gaps = 26/448 (6%)
Strand=Plus/Plus
Query 551 ATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCA 610
||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||| |
Sbjct 986 ATAGTGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGTA 1045
Query 611 CTGTTG---CA-CTATTCT-CAAAAAGGCTTA-AGAGGATAACCTCAGAGCATTGGGTCT 664
| ||| || | || || || || | || | | ||||| || |||||||||||||
Sbjct 1046 ATTTTGTGTCATC-AT-CTTCACAA-GATTTGGACATGATAAACTTGGAGCATTGGGTCT 1102
Query 665 TCGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAACCTCATCTCCCTA 724
||||||||||| |||| ||| ||||||||||| || || |||||||||||| | |||
Sbjct 1103 TCGTACTAGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTCATATATCTA 1162
Query 725 CGAGAC-TAGGATTGTGCGTCAATGGAGTTATATATTAT-TTGGCTTCCACTTGGAAGCG 782
| |||| | ||| ||||| || |||||||||||||||| ||| ||| |||| | | |
Sbjct 1163 CAAGACCT-GGACTGTGCATCGGTGGAGTTATATATTATCTTG-CTTTCACTAGTATGTT 1220
Query 783 TCGTG-ATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATGATCCAAG-GA 840
| | | ||||||||||||| ||||||||| | |||||||| || | || ||||||| |
Sbjct 1221 T-GAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATCCAAGCG- 1278
Query 841 CCTCTTAAGGTGTCTGCATTT-TCTGAG-TCTGTGGGATTTATAGAGTATGGTGGAAAAC 898
|||||| ||||||||||| | | || | ||| |||| ||||||||||||||||| ||||
Sbjct 1279 CCTCTTGTGGTGTCTGCATATGT-TG-GCTCTCTGGGTTTTATAGAGTATGGTGGGAAAC 1336
Query 899 CAGCTGTTTTTGATTATACCA-TGATGAAACAAA-CGGGTTTGGTGGACTTGTGGGTCTT 956
||||| ||||| || |||| | | | ||| ||| ||| |||||||||||| ||||||||
Sbjct 1337 CAGCTATTTTTTATCATACTAGTCTT-AAAGAAAACGG-TTTGGTGGACTTATGGGTCTT 1394
Query 957 GGAAGATGCTGGAAAATGGTCAAGGAAA 984
|||| |||||||||| ||||| ||||||
Sbjct 1395 GGAA-ATGCTGGAAACTGGTCGAGGAAA 1421
> Ahg918030 jgi|Araly1|918030|Al_scaffold_0008_2781
Length=1491
Score = 684 bits (370), Expect = 0.0
Identities = 587/689 (85%), Gaps = 26/689 (4%)
Strand=Plus/Plus
Query 355 TCGTCTAGTAGCAG-TGCTGAGTCTTTGGAACAAAATTTGACAATTG-CAGGGATGGGAG 412
|||||||||| | | ||| ||||||| | ||| ||||||||| || ||||||||||||
Sbjct 709 TCGTCTAGTA-CTGATGCAAAGTCTTTCCACCAAGATTTGACAA-TGCCAGGGATGGGAG 766
Query 413 GACGCAACATGGTGGTTCTTCGCGGCTTGATTCTATACGTTGTTTGCAGAACGGCGTCTA 472
||| ||||||| || ||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 767 GACACAACATGATGATTCTTCGCGGCTTGATTCTATACATTGTTTGCAGAAAGGCGTGTA 826
Query 473 TCTATAATCCCACCACCAGACAAAGTGTAACCTTACCTGCTGTCAAATCCAACATCCTTG 532
||||||||||||||||||||||| | ||||||||||| || |||||||||||||| |||
Sbjct 827 TCTATAATCCCACCACCAGACAATGCGTAACCTTACCCGCCGTCAAATCCAACATTTTTG 886
Query 533 CTCAAAAATCCCACT-GGAATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGAT 591
||||| || | | | | || ||| ||||||||||||| ||| |||||||||||||||||
Sbjct 887 CTCAAGAAGACTA-TCGTAAGAGTGTCCTCTACTTTTTAGGACACGATCCTGTTCTTGAT 945
Query 592 CAATACAAAGTAGTTTGCACTGTTGCACTATTCTCAAAAAGGCTTAAGAGGATAACCTCA 651
||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 946 CAATACAAAGTAGTTTGCACTGTTGCAGTATCCTCAAAAAGGTTTAAGAGGATAACCTCA 1005
Query 652 GAGCATTGGGTCTTCGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAA 711
||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| |
Sbjct 1006 GAGCATTGGGTCTTCGTCCTAGAACCCGGAGGTTCGTGGAAAAGAATTGAGTTTGATCTA 1065
Query 712 CCTCATC-TCCCTACGA-GACTAGGATTGTGCGTCAATGGAGTTATATATTATTTGGCTT 769
|||||| ||| | | | |||||||| ||||| |||| ||||| ||||||| ||||||||
Sbjct 1066 CCTCATTGTCC-TGC-ACGACTAGGACTGTGCATCAACGGAGTCATATATTTTTTGGCTT 1123
Query 770 CCACTTGGAAG-CGTCGTGATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGT 828
|| |||| | | | | | |||||| ||||||||||||| ||| ||||||||||||||
Sbjct 1124 CCGCTTGTATGTC-TAGCGATATCCTTGTCAGTTTTGATGTTATGTCTGAAGAGTTCAA- 1181
Query 829 ATG-ATCCAAGGACCTCTTAAGGTGTCTGCATTTTCTGAGTCTGTGGGATTTATAGAGTA 887
||| ||||||||||||| | | |||||||||| || | |||| |||||||||||
Sbjct 1182 ATGGATCCAAGGACCTCCTGTCGCGTCTGCATTTA---AGCCCATGGGTTTTATAGAGTA 1238
Query 888 TGGTGGAAAACCAGCTGTTTTTGATTATACC-ATGATGAAAC--AAACGGGTTTGGTGGA 944
| |||||||||| ||||||||||| || || || | |||| ||| || || |||||
Sbjct 1239 TCTTGGAAAACCATCTGTTTTTGATCATTCCCATCTT-AAACGCAAA-GG-TTCCGTGGA 1295
Query 945 CTTGTGGGTCTTGGAAGATGCTGGAAAATGGTC-AAGGAAATCTCTGGTTTTGCAGCCTT 1003
||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 1296 CTTATGGGTCTTGGAAGATGCTGGAAAATGGTCGAAG-AAATCCCTGGTTTTGCAGCCTT 1354
Query 1004 GTCAGATGCATTTAGTCGATAATGACATT 1032
|||||||||||||||| ||||| || |||
Sbjct 1355 GTCAGATGCATTTAGTTGATAA-GAAATT 1382
> Ahg358451 jgi|Araly1|358451|fgenesh1_pg.C_scaffold_8002238
Length=978
Score = 497 bits (269), Expect = 6e-140
Identities = 533/656 (81%), Gaps = 36/656 (5%)
Strand=Plus/Plus
Query 61 ATGTTGagaagaggaagaaaaagaagaagaagaatagaagaCGCTTTGGTCGCGCCGGAG 120
||| |||||||||||||||||||||||||| ||| || || || |||||| |||||||||
Sbjct 1 ATGATGAGAAGAGGAAGAAAAAGAAGAAGACGAAGAGGAGGCGATTTGGTAGCGCCGGAG 60
Query 121 ATCCCTCTCGATCTACTGATCGAGATTCTGACTAAATTGCCTGCTAAATCTCTTATGAGA 180
|| || | ||||| | ||||||||||||||||| ||||||||||||||| || |||||
Sbjct 61 ATTACTTTGGATCTCCAGATCGAGATTCTGACTAGATTGCCTGCTAAATCGCTGATGAGG 120
Query 181 TTCAAGTGCGTCTCAAAGTTATGGTCTTCTCTTATCCGTTCCCGATTTTTTAGCAACTGT 240
|||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||
Sbjct 121 TTCAAGTGCGTCTCAAAGCTATGTTCTTCTCTTATCCTTTCCCGATATTTTAGCAACTGT 180
Query 241 TATCTTACGGTCAAAACTCCAC-G-G-CGACCACCTCGTCTATACATGAGTTTGGTAGAC 297
|||||||||||| | |||||| | | | ||||||||| ||||||||||||||||| |||
Sbjct 181 TATCTTACGGTCGCATCTCCACTGCGACCACCACCTCGCCTATACATGAGTTTGGTGGAC 240
Query 298 CACCTCTTGTGTAATTC-ACTGATGGTTTGCCACTACCCATGTGAGTCTGTACTGCTGTC 356
|| | ||||| ||| || || ||| |||||| |||| | |||||||||||||| ||
Sbjct 241 CA---CGAGTGTAGTTCAAC-GAAGGTCTGCCACAACCCCCGCGAGTCTGTACTGCTATC 296
Query 357 GTCTAGT-AGCA-GTGCTGAGTCTTTGGAACAAAATTTGAC-A--ATTGC-AGGGATGGG 410
| || | | || | || || ||| || ||| ||||||| | | ||| |||||||||
Sbjct 297 AT-TA-TCATCATCTTCT-AG--TTTCGACCAAGATTTGACGACCA-TGCAAGGGATGGG 350
Query 411 AGGACGCAACATGGTGGTTCTTCGCGGCTTGATTCTATACGTTGTTTGCAGAACGGCGTC 470
|||||||||||||||| ||||||| ||||||||| ||||| |||||||| ||| ||||
Sbjct 351 AGGACGCAACATGGTGATTCTTCGTGGCTTGATTTTATACATTGTTTGCGGAAAAGCGTG 410
Query 471 TATCTATAATCCCACCACCAGACAAAGTGTAACCTTACCTGCTGTCAAATCCAACATCCT 530
|||||||||||||||||||||||| || ||||||||||| || |||||| ||||||| |
Sbjct 411 TATCTATAATCCCACCACCAGACAGAGCGTAACCTTACCCGCCATCAAATTCAACATCTT 470
Query 531 TGCTCAA--AAATCCCACTGGAATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTT 588
| |||| |||| || || || | |||||||| || ||| ||||||||||||||
Sbjct 471 TATTCAAGGAAAT--GAC---CATTGTGTACTCTACTTCTTGGGACACGATCCTGTTCTT 525
Query 589 GATCAATACAAAGTAGTTTGCACTGTTG---CA-CTATTCT-CAAAAAGGCTTA-AGAGG 642
|||||||||||||||||||| | | ||| || | || || || || | || | | |
Sbjct 526 GATCAATACAAAGTAGTTTGTAATTTTGTGTCATC-AT-CTTCACAA-GATTTGGACATG 582
Query 643 ATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCAGGAGGTTCGTGGAAAAGAAT 698
|||| || |||||||||||||| ||||||||| |||| ||| |||||||||||
Sbjct 583 ATAAACTTGGAGCATTGGGTCTTTGTACTAGAAGTTGGAGATTCTTGGAAAAGAAT 638
Score = 281 bits (152), Expect = 6e-75
Identities = 255/303 (84%), Gaps = 14/303 (5%)
Strand=Plus/Plus
Query 787 GATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATGATCCAAG-GACCTCT 845
|||||||||||||| ||||||||| | |||||||| || | || ||||||| | |||||
Sbjct 652 GATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATCCAAGCG-CCTCT 710
Query 846 TAAGGTGTCTGCAT-TTTCTGAG-TCTGTGGGATTTATAGAGTATGGTGGAAAACCAGCT 903
| ||||||||||| | | || | ||| |||| ||||||||||||||||| |||||||||
Sbjct 711 TGTGGTGTCTGCATATGT-TG-GCTCTCTGGGTTTTATAGAGTATGGTGGGAAACCAGCT 768
Query 904 GTTTTTGATTATACCATG-ATGAAA-CAAACGGGTTTGGTGGACTTGTGGGTCTTGGAAG 961
||||| || |||| | | | ||| |||| |||||||||||||| ||||||||||||
Sbjct 769 ATTTTTTATCATACTA-GTCTTAAAGAAAAC-GGTTTGGTGGACTTATGGGTCTTGGAAA 826
Query 962 ATGCTGGAAAATGGTCAAGGAAATCTCTG-GTTTTGCAGCCTTGTCAGATGCATTTAGTC 1020
|||||||||| ||||| | || |||| || | ||||||||||| |||| |||||||||||
Sbjct 827 ATGCTGGAAACTGGTCGATGAGATCTTTGAG-TTTGCAGCCTTCTCAGTTGCATTTAGTC 885
Query 1021 GATAATGACATTGAGTTT-AATGTGGAAGGTACAACTCAAAACGGCGAGGTTATCTTGGC 1079
||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 886 GATAACGACATTGA-TTTGACGGTGGAAGGTACAACTCAAAACGGCGAGGTTATCTTGGT 944
Query 1080 ACC 1082
|||
Sbjct 945 ACC 947
> Ahg951049 jgi|Araly1|951049|scaffold_802936.1
Length=637
Score = 361 bits (195), Expect = 8e-99
Identities = 443/558 (79%), Gaps = 35/558 (6%)
Strand=Plus/Plus
Query 492 ACAAAGTGTAACCTTACCTGCTGTCAAATCCAACATCCTTGCTCAA--AAATCCCACTGG 549
|||||| ||||||||||| || |||||| ||||||| ||| |||| |||| | |
Sbjct 92 ACAAAGCGTAACCTTACCCGCCATCAAATTCAACATCTTTGTTCAAGGAAAT--GA-T-- 146
Query 550 AATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGATCAATACAAAGTAGTTTGC 609
||||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 147 CATAGTGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGT 206
Query 610 ACTGTTG---CA-CTATTCT-CAAAAAGGCTTA-AGAGGATAACCTCAGAGCATTGGGTC 663
| | ||| || | || || || || | || | | ||||| || ||||||||||||
Sbjct 207 AATTTTGTGTCATC-AT-CTTCACAA-GATTTGGACATGATAAACTTGGAGCATTGGGTC 263
Query 664 TTCGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAACCTCATCTCCCT 723
|| ||||||||| |||| ||| ||||||||||| || || |||||||||||| | ||
Sbjct 264 TTTGTACTAGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTCATATATCT 323
Query 724 ACGAGAC-TAGGATTGTGCGTCAATGGAGTTATATATTAT-TTGGCTTCCACTTGGAAGC 781
|| |||| | ||| ||||| || |||||||||||||||| ||| ||| |||| | | |
Sbjct 324 ACAAGACCT-GGACTGTGCATCGGTGGAGTTATATATTATCTTG-CTTTCACTAGTATGT 381
Query 782 GTCGTG-ATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATGATCCAAG-G 839
| | | ||||||||||||| ||||||||| | |||||||| || | || ||||||| |
Sbjct 382 TT-GAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATCCAAGCG 440
Query 840 ACCTCTTAAGGTGTCTGCATTT-TCTGAG-TCTGTGGGATTTATAGAGTATGGTGGAAAA 897
|||||| ||||||||||| | | || | ||| |||| ||||||||||||||||| |||
Sbjct 441 -CCTCTTGTGGTGTCTGCATATGT-TG-GCTCTCTGGGTTTTATAGAGTATGGTGGGAAA 497
Query 898 CCAGCTGTTTTTGATTATACCA-TGATGAAACAAA-CGGGTTTGGTGGACTTGTGGGTCT 955
|||||| ||||| || |||| | | | ||| ||| ||| |||||||||||| |||||||
Sbjct 498 CCAGCTATTTTTTATCATACTAGTCTT-AAAGAAAACGG-TTTGGTGGACTTATGGGTCT 555
Query 956 TGGAAGATGCTGGAAAATGGTCAAGGAAATCTCTG-GTTTTGCAGCCTTGTCAGATGCAT 1014
||||| |||||||||| ||||| |||||| || || |||| |||||||| |||| ||| |
Sbjct 556 TGGAAAATGCTGGAAACTGGTCGAGGAAAGCTTTGAGTTT-GCAGCCTTCTCAGCTGC-T 613
Query 1015 TTAGTCGATAATGACATT 1032
||||| ||||| ||||||
Sbjct 614 TTAGTTGATAACGACATT 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5