BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62680.1
Length=2265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496450 jgi|Araly1|496450|fgenesh2_kg.8__2266__AT5G62680.1 3509 0.0
Ahg323400 jgi|Araly1|323400|fgenesh1_pm.C_scaffold_5000944 1094 0.0
Ahg887958 jgi|Araly1|887958|Al_scaffold_0303_1 261 2e-68
> Ahg496450 jgi|Araly1|496450|fgenesh2_kg.8__2266__AT5G62680.1
Length=2242
Score = 3509 bits (1900), Expect = 0.0
Identities = 2128/2236 (95%), Gaps = 24/2236 (1%)
Strand=Plus/Plus
Query 35 ACAAGAAAATAAAGATACTACAAAGTATACGA-CAACTTCtttttttGTTTGTAGTAAT- 92
||||||||||||||| |||||||| ||||||| ||| ||||||||| |||||||||||
Sbjct 26 ACAAGAAAATAAAGAAACTACAAAATATACGACCAA-GTCTTTTTTTCTTTGTAGTAATA 84
Query 93 AATTATAGCCAAAAATATAGACAAACAAAATGGAGAGAAAGCCTCTTGAACTTGAGTCGA 152
||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 85 AATTACAGCCAAACATATAGAGAAACAAAATGGAGAGAAAGCCTCTTGAAGTTGAGTCGA 144
Query 153 CGGATAACCACCAGAATCCTTCCTCCGCCGTATACGGTGGCTCTGTTACGGCGGTTGACT 212
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 145 CGGATAACCACCAGAATCTTTCCTCCGCCGTATACGATGGCTCTGTTACGGCGGTTGACC 204
Query 213 CTGTTGAAGAAGATGTTCAGAATCAGAAGAAAGTCGTTTATAGAGGCTGGAAAGTCATGC 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 CTGTTGAAGAAGATGTTCAGAATCAGAAGAAAGTCGTTTATAGAGGCTGGAAAGTCATGC 264
Query 273 CCTTTATTATTGGAAATGAGACATTTGAGAAGCTTGGGATCATTGGAACACTATCAAACC 332
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 265 CCTTTATTATTGGAAATGAAACATTTGAGAAGCTTGGGATCATTGGGACACTATCGAACC 324
Query 333 TTCTGGTTTATTTAACTGCAGTCTTCAACCTGAAGAGTATTACAGCTGCAACCATCATTA 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TTCTGGTTTATTTAACTGCAGTCTTCAACCTGAAGAGTATTACAGCTGCAACCATCATTA 384
Query 393 ACGCCTTTAGTGGCACAATTAATTTCGGAACTTTCGTTGCTGCTTTTCTCTGTGACACTT 452
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 385 ATGCCTTTAGTGGCACAATTAATTTCGGAACTTTCGTAGCTGCTTTCCTCTGTGACACTT 444
Query 453 ACTTCGGTCGATACAAGACTCTAAGTGTCGCGGTCATCGCATGTTTTCTTGGATCATTTG 512
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 445 ACTTCGGTCGATACAAGACTCTAAGTGTTGCGGTCATCGCCTGTTTTCTTGGATCGTTTG 504
Query 513 TGATACTATTGACTGCAGCAGTGCCACAACTGCATCCAGCTGCATGTGGAACAGCGGCGG 572
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 505 TGATACTATTGACTGCTGCAGTGCCACAACTGCATCCAGCTCCATGTGGAACAGCGGCGG 564
Query 573 ATAGCATATGTAACGGGCCAAGTGGAGGCCAGATAGCGTTTCTACTGATGGGTCTCGGGT 632
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 ATAGTATGTGTAACGGGCCAAGTGGAGGCCAGATAGCGTTTCTACTGATGGGTCTCGGGT 624
Query 633 TCCTTGTAGTGGGAGCGGGCGGTATTAGACCGTGTAACTTAGCTTTTGGGGCTGATCAGT 692
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 625 TCCTTGTAGTGGGAGCGGGAGGGATTAGACCGTGTAATTTAGCTTTTGGGGCTGATCAGT 684
Query 693 TTAACCCGAAAAGCGAATCAGGGAAAAGAGGGATTGACAGTTTCTTTAATTGGTATTTCT 752
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TTAACCCAAAAAGCGAATCAGGGAAAAGAGGGATTGACAGTTTCTTTAATTGGTATTTCT 744
Query 753 TTACCTTCACTTTCGCGCAGATCCTGTCGCTGACTCTAGTCGTCTACGTTCAGTCTAATG 812
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 745 TTACCTTCACTTTCGCGCAGATCTTGTCGCTGACTCTAGTCGTGTACGTTCAGTCTAATG 804
Query 813 TCAGTTGGACGATCGGTCTAACCATCCCTGCCGTTCTAATGTTTTTGGCCTGCTTGATTT 872
||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 805 TCAGTTGGACGATTGGTCTAACCATCCCGGCCGTTCTTATGTTCTTGGCCTGCTTGATTT 864
Query 873 TCTTTGCGGGCGATAAGTTGTATGTGAAGATCAAAGCCTCGGGTAGTCCATTGGCCGGTA 932
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 865 TCTTTGCGGGCGATAAGTTGTATGTGAAAATCAAAGCCTCGGGTAGTCCATTGGCCGGTA 924
Query 933 TAGCTCAAGTTATAGCGGTTGCGATCAAGAAACGCGGATTAAAGCCCGCGAAACAGCCTT 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TAGCTCAAGTTATAGCGGTTGCGATCAAGAAACGCGGATTAAAGCCCGCGAAACAGCCTT 984
Query 993 GGCTTAACCTTTACAATTACTACCCACCAAAATACGCAAACTCCAAGCTCAAATACACAG 1052
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 985 GGCTTAACCTTTACAATTACTACCCACCAAAATACGCAAACTCCAAGCTCAAATACACTG 1044
Query 1053 ACCAATTCAGATTTCTTGATAAAGCCGCTATCTTGACTCCTGAAGACAAGTTGCAGCCAG 1112
|||||||||||||||| ||||||||||| ||| ||||||| ||||| ||| |||||||||
Sbjct 1045 ACCAATTCAGATTTCTCGATAAAGCCGCGATCATGACTCCCGAAGATAAGCTGCAGCCAG 1104
Query 1113 ATGGTAAGCCTGCTGATCCTTGGAAGCTCTGTACAATGCAACAAGTTGAAGAAGTGAAGT 1172
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 ATGGTAAGCCTGCTGATCCGTGGAAGCTCTGTACAATGCAACAAGTTGAAGAAGTGAAGT 1164
Query 1173 GCATCGTGAGAGTGCTTCCTATATGGTTTGCATCATCAATTTACTACTTAACCATAACTC 1232
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1165 GCATCGTGAGAGTTCTTCCTATATGGTTTGCATCATCAATTTACTACTTAACCATTACTC 1224
Query 1233 AACAAATGACTTATCCCGTCTTCCAAGCCCTTCAGAGCGACCGTCGCTTAGGCTCAGGAG 1292
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1225 AACAAATGACTTATCCCGTCTTCCAAGCCCTCCAGAGCGACCGTCGCTTAGGCTCAGGAG 1284
Query 1293 GTTTTGTGATTCCCGCAGCCACCTACGTGGTTTTCTTGATGACGGGAATGACAGTTTTCA 1352
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 GATTTGTGATTCCTGCAGCCACCTACGTGGTTTTCTTGATGACGGGAATGACAGTTTTCA 1344
Query 1353 TCGTAGTCTACGACCGTGTACTTGTGCCAACCATGAGAAGAATTACTGGTCTAGACACCG 1412
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 TCGTAGTATACGACCGTGTACTTGTGCCAACCATGAGAAGAATTACTGGTCTAGACACCG 1404
Query 1413 GGATAACGCTCTTGCAGAGAATTGGAACTGGCATTTTCTTCGCTACCGCGAGTTTAGTAG 1472
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1405 GGATAACGCTCTTGCAGAGAATCGGAACTGGCATTTTCTTCGCTACCGCAAGCCTAGTAG 1464
Query 1473 TCGCGGGATTTGTCGAGGAACGAAGGAGAACATTCGCTCTGACTAAACCAACACTCGGTA 1532
|||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct 1465 TCGCGGGATTTGTCGAGGAAAGGAGGAGAACATTCGCTCTGACTAAACCGACACTCGGTA 1524
Query 1533 TGGCGCCAAGAAAGGGAGAAATCTCGTCGATGTCAGCTATGTGGCTGATTCCGCAGCTCT 1592
|||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1525 TGGCGCCACGAAAGGGAGAAATCTCCTCAATGTCAGCTATGTGGCTGATTCCGCAGCTCT 1584
Query 1593 CACTGGCGGGTGTAGCAGAGGCATTTGCAGCCATTGGACAAATGGAGTTTTACTACAAGC 1652
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1585 CACTGGCGGGTGTAGCCGAGGCATTTGCAGCGATTGGACAAATGGAGTTTTACTACAAGC 1644
Query 1653 AGTTTCCCGAGAACATGAGGAGTTTCGCTGGATCCATCTTTTACGTTGGAGGAGGAGTTT 1712
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1645 AGTTTCCCGAAAACATGAGGAGTTTCGCGGGATCCATCTTTTACGTAGGAGGAGGAGTTT 1704
Query 1713 CGAGTTACCTTGGTAGCTTCTTGATTGCAACAGTTCACAGGACAACACAGAACTCGTCAG 1772
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1705 CGAGTTACCTCGGTAGCTTCTTGATTGCAACAGTTCACAGGATGACGCAGAACTCGTCCG 1764
Query 1773 GGGGTAACTGGTTAGCTGAGGATTTGAACAAAGGAAGATTGGATCTCTTCTATTTCATGA 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 GGGGTAACTGGTTAGCTGAGGATTTGAACAAAGGAAGATTGGATCTCTTCTATTTCATGA 1824
Query 1833 TCGCTGGAATCCTGGCAGTTAATTTTGCTTATTTCTTGGTGATGTCAAGATGGTATAGGT 1892
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1825 TCGCTGGAATCTTGGCAGTTAATTTTGCTTATTTCTTGGTGATGTCAAGATGGTACAGGT 1884
Query 1893 ACAAAGGAAGTGATGACGAAGTGACAACATATGAAACCAATGAAAATATCATCAAACAGC 1952
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1885 ACAAAGGAAGTGATGATGAAGTGACAACATATGAAACCAATGAACATATCATCAAACCGC 1944
Query 1953 AAGACAAGAACGTTGCCTGATAATCATGGATTTGTCATCTTCTGGAAGCTGTTAGACTTA 2012
|||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||
Sbjct 1945 AAGACAAGAACGTTGCCTGATAATTATGGAATTGCCATCTCCTGGAAGCTGTTAGACTTA 2004
Query 2013 GTTTTTGGTCAGCTTCTCTCAATCCCCTTTT-ACATTTTCTTTGGATTTTCTTGGAATAA 2071
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 2005 GTTTTTGGTCAGCTTCTCACAATCCCCTTTTTACATTTTCTTTGGATTTTCTTGGAATAA 2064
Query 2072 GCCATATAGAGATGAAGTAATCATATA-CTTGTTCTGGCttttttttgcctttttttttt 2130
||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 2065 GCCATATAGAGATGAAGTAATCATATAACTTGTTCTGGCTTTTTTTT---TTT------- 2114
Query 2131 CTTCTTCTGGTTACTGTGTTAAGATCACATCTCTTTCTTTCTATCATTGTGGACAAAAGA 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 --------GGTTACTGTGTTAAGATCACATCTCTTTCTTTCTATCATTGTGGACAAAAGA 2166
Query 2191 GAGATTTATAACATCAGATGTATTTCAGAATAAAA-TTTGTCTTTCATTGTGAGGACTCT 2249
|||||||||||||||||||||| | || ||||||| |||||||| |||| ||||||||||
Sbjct 2167 GAGATTTATAACATCAGATGTACTGCAAAATAAAAATTTGTCTTGCATTTTGAGGACTCT 2226
Query 2250 GTTTCTATTTTCTGTC 2265
||||||||||||||||
Sbjct 2227 GTTTCTATTTTCTGTC 2242
> Ahg323400 jgi|Araly1|323400|fgenesh1_pm.C_scaffold_5000944
Length=1935
Score = 1094 bits (592), Expect = 0.0
Identities = 1355/1715 (79%), Gaps = 86/1715 (5%)
Strand=Plus/Plus
Query 237 AGAAGAAAGTCGTTTATAGAGGCTGGAAAGTCATGCCCTTTATTATTGGAAATGAGACAT 296
|||| ||| ||||||||||||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 196 AGAA-AAA-TCGTTTATAGAGGATGGAAAGTCATGCCTTTTATCATTGGTAATGAGACAT 253
Query 297 TTGAGAAGCTTGGGATCATTGGAACACTATCAAACCTTCTGGTTTATTTAACTGCAGTCT 356
||||||||||||||||||| || ||| ||||||||||||| || || ||||| | || |
Sbjct 254 TTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTTGTGTACCTAACTTCTGTAT 313
Query 357 TCAACCTGAAGAG-TATTACAGCTGCAACCATCATTAACGCCTTTAGTGGCACAATTAAT 415
||||||| ||||| || ||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct 314 TCAACCTTAAGAGCTA-CACAGCTGCAACTATCATCAATGCCTTTAGTGGTACAATCAAC 372
Query 416 TTCGGAACTTTCGTTGCTGCTTTTCTCTGTGACACTTACTTCGGTCGATACAAGACTCTA 475
||||| ||||| ||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 373 TTCGGGACTTTTATTGCTGCTTTTCTTTGCGACACTTACTTTGGTCGCTACAAGACTCTC 432
Query 476 AGTGTCGCGGTCATCGCATGTTTTCTTGGATCATTTGTGATACTATTGACTGCAGCAGTG 535
|||||||| |||||||| |||||||| ||||| |||||||||||| ||||||| |||||
Sbjct 433 AGTGTCGCTGTCATCGCTTGTTTTCTGGGATCGTTTGTGATACTACTGACTGCTGCAGTT 492
Query 536 CC-ACAACTGCATCCAGCTGCATGTGG-AACAGCGGCGGATAGCATATGTAACGGGCCAA 593
|| | | |||| || | ||| || || |||| || | | | | || ||||| |
Sbjct 493 CCGTC-ATTGCACCCCGTTGCTTGCGGAAACAAAAGC---T--CGTGCG-AA-GGGCCGA 544
Query 594 GTG-GAGGCCAGATAGC-GTTTCTACTGATGGGTCTCGGGTTCCTTGTAGTGGGAGCGGG 651
||| | || |||||| | |||||| ||||||||| | ||||| ||||| || || |||||
Sbjct 545 GTGTG-GGACAGATA-CTGTTTCTGCTGATGGGTTTAGGGTTTCTTGTGGTAGGTGCGGG 602
Query 652 CGGTATTAGACCGTGTAACTTAGCTTTTGGGGCTGATCAGTTTAACCCGAAAAGCGAATC 711
||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| |||| ||||||
Sbjct 603 TGGTATCAGACCATGTAATTTAGCGTTTGGTGCTGATCAGTTCAACCCCAAAACCGAATC 662
Query 712 AGGGAAA-AGAGGGATTGACAGTTTCTTTAATTGGTATTTCTTTACCTTCACTTTCGCGC 770
||||| | |||||| |||||||||| || ||||||||||| || || || |||||||
Sbjct 663 -TGGAAAGAAAGGGATCAACAGTTTCTTCAACTGGTATTTCTTCACTTTTACGTTCGCGC 721
Query 771 AGATCCTGTCGCTGAC-TCTAGTCGTCTACGTTCAGTCTAATGTCAGTTGGACGATCGGT 829
||||| | ||||| || | ||| || || | ||||| ||||| |||||||||||||||
Sbjct 722 AGATCATCTCGCTCACGGC-AGTTGTGTATATCCAGTCAAATGTGAGTTGGACGATCGGT 780
Query 830 CTAACCATCCCTGCCGT-TCTAATGTTTTTGGCCTGCT-TGATTTTCTTTGCGGGCGATA 887
| | ||| || | || ||| ||||| ||||| || | |||| |||||||| |||||||
Sbjct 781 TTGATCATTCCAG-TGTCTCTTATGTTCTTGGCGTG-TGTGATCTTCTTTGCTGGCGATA 838
Query 888 AGTTGTATGTGAAGA-TCAAAGCCTCGGGTAGTCCATTGGCCGGTATAGCTCAAGTTATA 946
| |||||||| || | | ||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 839 AATTGTATGT-AAAAGTGAAAGCCTCGGGTAGTCCATTGGCTGGTATCGCTCGTGTTATA 897
Query 947 GCGGTTGCGATCAAGAAACGCGGATTAAAGCCCGCGAAACAGCCTTGGCTTAACCTTTAC 1006
|| | || ||||||||||| ||||| ||||| | || ||||||||| | || ||||||
Sbjct 898 GCAGCCGCAATCAAGAAACGAGGATTGAAGCCGGTTAAGCAGCCTTGGGTCAATCTTTAC 957
Query 1007 AATTACTA-CCCACCAAAATACGC-AA-ACTCCAAGCTCAAATACACAGACCAATTCAGA 1063
|| || | || || || || || || ||| | || |||||||| ||||| ||||||
Sbjct 958 AACCAC-ATTCCGCCTAACTATGCTAATACT--ACTCTAAAATACACTGACCAGTTCAGA 1014
Query 1064 TTTCTTGATAAAGCCGCTATCT-TGACTCCTGAAGACAAGTTGCAGC-CAGATGGTAAGC 1121
||||| || ||||| || || | |||| || || || |||||| | | | ||||| |||
Sbjct 1015 TTTCTAGACAAAGCAGCAAT-TATGACCCCCGAGGAGAAGTTG-AACTCTGATGG--AGC 1070
Query 1122 --CTGCTGATCCTTGGAAGCTCTGTACAATGCAACAAGTTGAAGAAGTGAAGTGCATCGT 1179
|| | ||||| ||||| || || || |||| ||||| ||||||||||| ||||| ||
Sbjct 1071 GGCTTCCGATCCATGGAAACTATGCACGTTGCAGCAAGTGGAAGAAGTGAAATGCATTGT 1130
Query 1180 GAGAGTGCTTCCTATATGGTTTGCAT-CATCAATTTACTA-CTTAACCATAACTCA-ACA 1236
|||||| |||| || |||||||| | || | |||||||| ||| | ||||| | |||
Sbjct 1131 TAGAGTGATTCCAATCTGGTTTGCTTCCA-CGATTTACTACCTT-GCAATAAC-GATACA 1187
Query 1237 AATGACTTATCCCGTCTTCCAAGCCCTTCAGAGCGACCGTCGCTTAGGCTCAGGAGG-TT 1295
|||||||||||| ||||||||||| | ||||||||||| || ||||| || || || ||
Sbjct 1188 AATGACTTATCCGGTCTTCCAAGCGATCCAGAGCGACCGACGATTAGGTTCTGGTGGCTT 1247
Query 1296 TTGTGATTCCCGCAGCCACCTACGTGGTTTTCTTGATGACGGGAATGACAGTTTTCATCG 1355
| |||||| || |||||||| || || ||||||||||| || |||||||||||||||
Sbjct 1248 CAG-GATTCCTGCGGCCACCTATGTAGTGTTCTTGATGACTGGCATGACAGTTTTCATCA 1306
Query 1356 TAGTCTACGACCGTGTACTTGTGCCAAC-CATGAGAAGAATTACTGGTCTAGACACCGGG 1414
|| |||| |||||||||||||| || | | | |||||| | || || |||| |||||
Sbjct 1307 TATTCTATGACCGTGTACTTGTCCCGTCGC-TCAGAAGAGTGACCGGGATAGAAACCGGT 1365
Query 1415 ATAACGCTCTTGCAGAGAATTGGAACTGGCATTTTC--TT-CGCTACCGCGAGTTTAGTA 1471
||| | ||||| || ||||| ||| | || ||| | || || || | ||||||| ||
Sbjct 1366 ATATCACTCTTACAAAGAATCGGAGCAGG-GTTTACATTTGCGATA-C-TGAGTTTATTA 1422
Query 1472 G--TCGCGGGATTTGTCGAGGAACGAAGGAGAACATTCGCTCTGACTAAACCAACACTCG 1529
| || |||| ||| | |||||| | || ||||| || || ||||| ||||| |||||||
Sbjct 1423 GTTTC-CGGG-TTTATAGAGGAAAGGAGAAGAACCTTTGCACTGACCAAACCGACACTCG 1480
Query 1530 GTATGGCGCC-AAGAAAGGGAGAAATCTCGTCGATGTCAGC-TATGTGGCTGATTCCGCA 1587
| |||||||| || | ||||||||||| || |||||||| | | ||||||||||||||
Sbjct 1481 GGATGGCGCCTCGGACA-GGAGAAATCTCCTCAATGTCAGCGT-TATGGCTGATTCCGCA 1538
Query 1588 GCTCTCACTGGCGGGTGTAGCAGAGGCATTTGCAGCCATTGGACAAATGGAGTTTTACTA 1647
|||| |||| || || ||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 1539 GCTCACACTTGCAGGCGTAGCCGAAGCTTTTGCTGCCATTGGACAAATGGAGTTTTACTA 1598
Query 1648 CAAGCAGTTTCCCGAGAACATGAGGAGTTTCGCTGGATCCATCTTTTACGTTGGAGGAGG 1707
|||||||||||| || ||||||| ||| ||||| || || |||||||| || || | |||
Sbjct 1599 CAAGCAGTTTCCTGAAAACATGAAGAGCTTCGCAGGTTCTATCTTTTATGTCGGTGCAGG 1658
Query 1708 AGTTTCGAGTTACCTTGGTAGCTTCTTGAT-TGCAACAGTTCA-CAGGA-CAACA-CAGA 1763
|||||||| ||||| | |||||||||||| | |||| ||||| | | | |||| | |
Sbjct 1659 GGTTTCGAGCTACCTCGCTAGCTTCTTGATCT-CAACTGTTCATC-G-ATCAACTGC-GC 1714
Query 1764 ACTCG--T-CAGGGGGTAACTGGTTAGCTGAGGATTTGAACAAAG-GAAGATTGGATCT- 1818
| || | ||||| || ||||||||||||||| ||||| ||| ||| ||||||| |
Sbjct 1715 ATTCACCTTCAGGG---AATTGGTTAGCTGAGGATCTGAACGAAGCGAA-ATTGGAT-TA 1769
Query 1819 CTTCTATTTCATGATCGCTGGAATCCTGGCAGTTAATTTTGCTTATTTCTTGGTGATGTC 1878
|||||| |||||| || | ||| || ||| ||||| | ||||| |||||| ||||| |
Sbjct 1770 CTTCTACTTCATGCTCACAGGACTCATGGTTGTTAACATGGCTTACTTCTTGTTGATGGC 1829
Query 1879 -AAGATGGTATAGGTACAAAGGAAGTGATGACGAA 1912
|| ||||||||| |||||||| || |||| |||
Sbjct 1830 GAA-ATGGTATAGATACAAAGGCGGTAATGATGAA 1863
> Ahg887958 jgi|Araly1|887958|Al_scaffold_0303_1
Length=441
Score = 261 bits (141), Expect = 2e-68
Identities = 213/248 (86%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 237 AGAAGAAAGTCGTTTATAGAGGCTGGAAAGTCATGCCCTTTATTATTGGAAATGAGACAT 296
|||| ||| ||||||||||||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 196 AGAA-AAA-TCGTTTATAGAGGATGGAAAGTCATGCCTTTTATCATTGGTAATGAGACAT 253
Query 297 TTGAGAAGCTTGGGATCATTGGAACACTATCAAACCTTCTGGTTTATTTAACTGCAGTCT 356
||||||||||||||||||| || ||| ||||||||||||| || || ||||| | || |
Sbjct 254 TTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTTGTGTACCTAACTTCTGTAT 313
Query 357 TCAACCTGAAGAG-TATTACAGCTGCAACCATCATTAACGCCTTTAGTGGCACAATTAAT 415
||||||| ||||| || ||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct 314 TCAACCTTAAGAGCTAC-ACAGCTGCAACTATCATCAATGCCTTTAGTGGTACAATCAAC 372
Query 416 TTCGGAACTTTCGTTGCTGCTTTTCTCTGTGACACTTACTTCGGTCGATACAAGACTCTA 475
||||| ||||| ||||||||||||| || ||||| ||||| ||||| |||||||||||
Sbjct 373 TTCGGGACTTTTATTGCTGCTTTTCTTTGCGACACATACTTTGGTCGCTACAAGACTCTC 432
Query 476 AGTGTCGC 483
||||||||
Sbjct 433 AGTGTCGC 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85284058555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5