BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62710.1
Length=2225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951058 jgi|Araly1|951058|scaffold_802945.1 2772 0.0
> Ahg951058 jgi|Araly1|951058|scaffold_802945.1
Length=1857
Score = 2772 bits (1501), Expect = 0.0
Identities = 1732/1845 (94%), Gaps = 9/1845 (0%)
Strand=Plus/Plus
Query 123 TGGAATCAGTGAAATGGGTATCTCGAA-TTGGGTTTTCTCTGTAATTTCTGTAGCTACCC 181
|||||||||||||||||||||||| || |||||||||||| |||||||||| ||||||||
Sbjct 10 TGGAATCAGTGAAATGGGTATCTC-AATTTGGGTTTTCTCAGTAATTTCTGCAGCTACCC 68
Query 182 TTTTTGTCTCCTGCTCCTTTGCTCTCACTCTTGATGGATTTGCTCTATTGGAATTGAAGA 241
|||| || || ||||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct 69 TTTTCGTTTCGTGCTCCTCCGCTCTCACTCCTGATGGATTTGCTCTTTTGGAATTGAAGA 128
Query 242 GTGGATTTAATGATACGAGGAACTCACTAGAGAACTGGAAAGATTCAGATGAGTCTCCTT 301
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 129 GTGGATTCAATGATACGAGGAACTCTTTAGAGAACTGGAAAGATTCAGATGAGTCTCCTT 188
Query 302 GTTCTTGGACTGGTGTCTCCTGTAATCCTCAAGACCAAAGAGTTGTTTCTATAAACTTAC 361
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 189 GTTCTTGGACTGGTGTCTCCTGTAATCCTCAAGACCAGAGAGTCGTCTCTATAAACTTAC 248
Query 362 CATATATGCAATTAGGAGGGATAATATCTCCTAGCATTGGGAAGCTTAGTCGATTGCAGA 421
|||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 249 CATACATGCAACTAGGAGGGATAATATCTCCTAGCATTGGAAAACTTAGTCGATTGCAGA 308
Query 422 GACTGGCACTTCATCAGAATAGCTTACATGGGA-ACATTCCTAATGAAATCACCAACTGC 480
||||||||||||||||||| ||||||| |||| | || ||||||||||||||||| |||
Sbjct 309 GACTGGCACTTCATCAGAACAGCTTACGCGGGATA-ATCCCTAATGAAATCACCAATTGC 367
Query 481 ACTGAGCTAAGAGCTATGTACTTGAGGGCGAATTTTCTCCAAGGCGGGATTCCACCGGAT 540
|||||||| ||||| ||||| ||||| || |||||||| ||||| |||||||||||||||
Sbjct 368 ACTGAGCTCAGAGCCATGTATTTGAGAGCAAATTTTCTTCAAGGAGGGATTCCACCGGAT 427
Query 541 TTAGGCAACCTTACATTTCTTACTATATTGGATCTATCAAGCAATACACTCAAGGGTGCT 600
| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 428 CTCGGCAACCTTACATTTCTTACGATATTGGATCTATCAAGCAATACACTGAAGGGTGCT 487
Query 601 ATTCCTTCTTCAATTAGTCGATTGACGCGGTTACGCTCCTTGAACTTGTCAACCAACTTT 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 488 ATTCCTTCTTCAATTAGTCGATTGACGCGATTACGCTCCTTGAACTTGTCAACCAACTTT 547
Query 661 TTCTCTGGTGAAATACCGGATATTGGAGTTCTCAGCAGATTCGGGGTCGAAAC-TTTCAC 719
|||||||| || || |||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 548 TTCTCTGGCGAGATCCCGGATATTGGAGTTCTCAGCAGATTTGGGGTCGAAACATTT-AC 606
Query 720 TGGTAATTTGGATCTCTGTGGCCGGCAAATTCGCAAGCCATGTAGATCATCAATGGGTTT 779
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 607 CGGTAATTTGGATCTTTGTGGCCGGCAAATTCGCAAGCCATGTAGATCATCGATGGGTTT 666
Query 780 CCCTGTTGTTCTTCCTCATGCAGAAAGTGCTGATGAATCAGATTCTCCAAAGCGATCATC 839
|||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||||
Sbjct 667 CCCTGTTGTTCTTCCTCATGCAGAAACTGATGATGAATCAGATCCTCCAAAGCGGTCATC 726
Query 840 ACGCTTGATTAAAGGAATCTTGATCGGCGCAATGTCTACAATGGCTCTTGCATTCATCGT 899
|| || ||||||||||| ||||| || ||||||||||||||||||||||||||||| ||
Sbjct 727 GCGGTTAATTAAAGGAATTTTGATTGGAGCAATGTCTACAATGGCTCTTGCATTCATTGT 786
Query 900 GATCTTTGTTTTCCTATGGATTTGGATGCTCTCaaagaaggaaagaaaagtaaagaagta 959
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 787 GATCTTTGTATTCCTATGGATTTGGATGCTCTCAAAGAAGGAAAGAACAGTAAAGAAGTA 846
Query 960 cacagaagtcaagaaacaaaagGATCCATCCGAAACAAGTAAAAAGCTGATTACTTTCCA 1019
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 847 CACAGAAGTCAAGAAACAAAAGGATCCATCCGAAACAAGTAAAAAGCTTATTACTTTCCA 906
Query 1020 TGGTGATCTTCCATACTCTTCAACTGAGCTGATTGAGAAGCTAGAGTCTCTTGACGAGGA 1079
||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 907 TGGCGATCTTCCATACTCCTCGACTGAGCTGATCGAGAAGCTAGAGTCTCTTGACGAGGA 966
Query 1080 AGACATTGTGGGTTCGGGAGGATTTGGCACGGTTTATCGAATGGTTATGAACGATCTTGG 1139
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 967 AGACATTGTGGGTTCGGGAGGATTTGGCACTGTTTATCGAATGGTAATGAATGATCTTGG 1026
Query 1140 AACCTTTGCGGTTAAAAAGATAGATAGGAGTCGACAAGGATCAGACCGAGTTTTTGAGCG 1199
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1027 AACCTTTGCGGTTAAGAAGATAGATAGAAGTCGAGAAGGATCAGACCGAGTTTTTGAGCG 1086
Query 1200 AGAAGTAGAGATTTTAGGTAGTGTCAAACACATCAATCTAGTGAACCTACGTGGATACTG 1259
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1087 AGAGGTAGAGATTTTGGGTAGTGTCAAACACATCAATCTAGTGAACCTCCGTGGATACTG 1146
Query 1260 CCGTTTACCATCTTCAAGACTTCTCATCTATGATTATCTAACCTTAGGAAGCTTAGACGA 1319
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 CCGCTTACCGTCTTCAAGACTTCTCATCTATGATTATCTAACCTTAGGAAGCTTAGACGA 1206
Query 1320 TCTTCTTCACGAACGAGCTCAAGAAGACGGTTTGTTGAACTGGAATGCTCGGTTGAAAAT 1379
|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 1207 TCTTCTCCACGAACGAGCTCAAGAAGACGGTTTGTTGAATTGGAATGCTCGGCTGAGAAT 1266
Query 1380 TGCGCTAGGTTCCGCGAGGGGTCTTGCTTATCTA-CACCATGATTGTAGTCCCAAAATTG 1438
||||||||||||||||||||||| || || || ||||||||||||||||||||||| |
Sbjct 1267 AGCGCTAGGTTCCGCGAGGGGTCTAGCGTA-CTTGCACCATGATTGTAGTCCCAAAATAG 1325
Query 1439 TTCACCGTGACATAAAATCGAGCAATATTCTACTCAATGATAAACTAGAACCTCGAGTCT 1498
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1326 TTCACCGTGACATAAAATCGAGCAATATTCTACTCAATGATAAACTGGAACCTCGAGTCT 1385
Query 1499 CGGACTTTGGTCTTGCAAAGCTTCTTGTTGACGAAGATGCTCATGTTACCACCGTGGTAG 1558
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1386 CGGACTTTGGTCTTGCAAAGCTTCTTGTGGACGAAGATGCTCATGTTACCACTGTGGTAG 1445
Query 1559 CTGGCACCTTTGGCTATCTTGCTCCAGAGTATCTGCAAAATGGGAGAGCGACGGAGAAGT 1618
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1446 CTGGCACCTTTGGCTATCTTGCTCCAGAGTATCTGCAAAATGGGAGAGCAACAGAGAAAT 1505
Query 1619 CTGATGTGTACAGCTTTGGAGTTCTTCTCCTTGAGCTCGTTACCGGAAAAAGACCAACAG 1678
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1506 CTGATGTATACAGCTTTGGAGTTCTTCTCCTTGAGCTCGTTACAGGAAAAAGACCAACAG 1565
Query 1679 ACCCGATATTCGTTAAAAGAGGCTTGAACGTCGTCGGATGGATGAACACTGTGTTGAAAG 1738
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1566 ACCCGATATTCGTCAAAAGAGGCTTGAATGTCGTCGGATGGATGAACACTGTGTTGAAGG 1625
Query 1739 AGAATCGATTAGAGGATGTAATAGACAAGAGATGCACCGATGTCGACGAAGAGTCTGTTG 1798
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1626 AGAATCGATTAGAGGATGTAATAGACAAGAGATGCACCGATGTAGACGAAGACTCGGTTG 1685
Query 1799 AGGCATTGCTCGAGATAGCTGAGAGATGTACAGATGCTAACCCGGAGAACAGGCCGGCTA 1858
||||||||||||||||||| | |||||||| ||||| ||||| ||| ||||||||||||
Sbjct 1686 AGGCATTGCTCGAGATAGCGGCCAGATGTACGGATGCGAACCCAGAGGACAGGCCGGCTA 1745
Query 1859 TGAACCAGGTGGCTCAGTTGCTTGAGCAAGAAGTCATGTCACCTTCTTCTGGTATCGATT 1918
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1746 TGAACCAGGTGGCTCAGTTGCTTGAGCAAGAAGTCATGTCGCCTTCTTCTGGTATCGATT 1805
Query 1919 ACTACGATGATTCTCATTCTGATTACTGTTAGGGACTTATGCACG 1963
||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1806 ACTACGATGATTCTCATTCCGATTACTGTTAGGG-CTTATGCACG 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83760448755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5