BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62720.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496454 jgi|Araly1|496454|fgenesh2_kg.8__2270__AT5G62720.1 1415 0.0
> Ahg496454 jgi|Araly1|496454|fgenesh2_kg.8__2270__AT5G62720.1
Length=926
Score = 1415 bits (766), Expect = 0.0
Identities = 849/890 (95%), Gaps = 2/890 (0%)
Strand=Plus/Plus
Query 1 GTCTGTCTCCTATTGGCTAAGAAAACAGAGAGAATCGGTATTTTTAGCCTTTGCTAAGAT 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTCTCTCCTATTGGCTAAGAAAACAGAGAGAATCGGTATTTTTAGCCTTTGCTAAGAT 60
Query 61 ATTTTGATCAAAAATCCCACTTTTGAGCGGTCTTATCTTTATTCTCCACCTCAAAGGACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTTTGATCAAAAATCCCACTTTTGAGCGGTCTTATCTTTATTCTCCACCTCAAAGGACC 120
Query 121 ATTTCTCATGGCTTCTGTTCCGGTGAGACCTCTACCTCTTCTTCGCCGGAACATCACCTC 180
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 ATTTCTCATGGCTTCTGTTCCGGTGAAACCACTACCTCTTCTTCGCCGGAACATCACCTC 180
Query 181 GACGACGGCTTCGAAATCATCTCCAATGCTCGCCAACGTTTCGAGCCGGCATTCTCTCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GACGACGGCTTCGAAATCATCTCCAATGCTCGCCAACGTTTCGAGCCGGCATTTTCTCGG 240
Query 241 GATCTCTACGTATGATGAATTTTTGAAGCAAATAAAAACTCCGGCAACTGTGAA-CCACC 299
||||| ||||||| | |||| |||| |||||| | |||||| || || | || |||||
Sbjct 241 GATCTTTACGTATAAAGAATCCTTGAGGCAAATGAGAACTCCAGCGTCTTT-AAGCCACC 299
Query 300 GGCGGCGAGTAAGTACGGTGGTGGCGTCGGCGGGAAACTTGACGGCGCCGTCGTGGGATT 359
| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 300 GCCGGAGAGTAAGTACGGTGGTGTCATCGGCGGGAAACTTGACGGCGCCGTCGTGGGACT 359
Query 360 CGTGGAAGCCTGATAAGACGGCGGCGGCTACGGCTCTTTTGCTGAGTGACGTCATATGGC 419
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 360 CGTGGAAGCCAGATAAGACGGCGGCGGCTACGGCTCTGTTGCTGAGTGACGTCATTTGGC 419
Query 420 CTGCTGCTGGAGCGTTTGCGGCAATGGCATTATTGGGAAGAATGGATCAAATGCTATCTC 479
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 CTGCAGCTGGAGCGTTTGCGGCAATGGCAATATTGGGAAGAATGGATCAAATGCTATCTC 479
Query 480 CGAAAGGCATTTCAATGTCAGTTGCACCACTTGGCGCAGTCTCCGCCATTCTTTTCATCA 539
| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 480 CAAAAGGGATTTCAATGTCAGTTGCACCACTTGGTGCTGTCTCCGCCATTCTTTTCATCA 539
Query 540 CCCCTTCTGCTCCTGCTGCTCGGAAATACAATATATTTTTGGCTCAAATAGGTTGTGCTG 599
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 CTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTTTTGGCTCAAATAGGTTGTGCTG 599
Query 600 CGATTGGGGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAGTGTCGCCC 659
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGATTGGAGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAGTGTCGCCC 659
Query 660 TCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGCGGCGAGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGCGGCGAGCT 719
Query 720 TACCACTAATGTTCATAGATGGAGCAAAGTTCCATCACTTGAATTTCTGGTACGCATTGT 779
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 TACCATTAATGTTCATAGATGGAGCAAAGTTCCATCACTTGAATTTCTGGTATGCATTGT 779
Query 780 TCCCAGGTGCAGCTGCTTGTGTCATCCTCTGCCTTCTCCAATCGATCGTATGTTACTTGA 839
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 TCCCAGGTGCAGCTGCTTGTGTCATCCTATGCCTTCTCCAATCGATCGTATGTTACTTGA 839
Query 840 AGGAAAACATGAAATTTTGATGAATCACCAAGCGACATGTACGATCGAAT 889
||||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 840 AGGAAAACATGAAATTTTGATGAATCATCAAGCAACACGTACGATCGAAT 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5