BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62730.1
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332502 jgi|Araly1|332502|fgenesh1_pm.C_scaffold_8001845 2614 0.0
> Ahg332502 jgi|Araly1|332502|fgenesh1_pm.C_scaffold_8001845
Length=1698
Score = 2614 bits (1415), Expect = 0.0
Identities = 1607/1701 (94%), Gaps = 8/1701 (0%)
Strand=Plus/Plus
Query 73 ATGTCTCTGGA-GTTTGAACAAATGGATGAAGCAAACAGGTTAAGCGCGTGGAATGGTTA 131
||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGTCTC-AGACGTTTGAACAAATGGATGAAGCAAACAGGTTAAGCACGTGGAATGGTTA 59
Query 132 CGTAGACTGGCGAAGTAGACCTGCGTTGCGTGGCCGCCATGGCGGTATGCTTGCTGCCTC 191
||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 60 TGTAGACTGGCGAAATAGACCGGCGTTGCGTAGCCGCCATGGCGGTATGCTTGCTGCCTC 119
Query 192 GTTCGTCTTGGTTGTGGAAGTGTTGGAGAACCTTGCGTTTTTAGCAAACGCGAGCAACCT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTTCGTCTTGGTTGTGGAAGTGTTGGAGAACCTTGCGTTTTTAGCAAACGCGAGCAACCT 179
Query 252 AGTGCTGTATTTGTCAACAAAGATGGGATTTTCGCCGTCCGGAGCCGCAAATGCCGTAAC 311
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 180 AGTGCTGTATTTGTCAACAAAGATGGGATTTTCGCCGTCGGGAGCCGCAAATGCAGTAAC 239
Query 312 CGCTTTTATGGGAACGGCATTTTTCTTGGCCCTTCTCGGAGGGTTTTTGGCAGACGCCTT 371
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 CGCTTTTATGGGAACGGCGTTTTTCTTGGCCCTTCTCGGAGGTTTTTTGGCAGACGCCTT 299
Query 372 CTTCACTACTTTCCATATCTATTTAGTCAGCGCCGCCATAGAATTCTTGGGCTT-GATGG 430
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 300 CTTCACTACTTTCCATATCTATCTAGTCAGCGCCGCCATAGAATTCTTGGGCTTAG-TGG 358
Query 431 TACTGACGGTCCAAGCCCACGAGCACTCTACCGAGCCATGGTCTCGTGTAT-TTCTATTT 489
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 359 TACTAACGGTCCAAGCCCACGAGCACTCTACCGAGCCATGGTCTCGTGT-TGTTCTATTT 417
Query 490 GTGGGTCTATATTTAGTAGCTCTTGGTGTCGGAGGAATAAAAGGCTCGTTGCCACCGCAC 549
||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 418 GTGGGTCTATACTCAGTTGCTCTCGGTGTCGGAGGAATAAAAGGCTCGTTGCCACCGCAC 477
Query 550 GGAGCGGAACAGTTCGACGAAGAAACATCGAGTGGGAGGAGACAAAGATCTTTCTTCTTT 609
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 478 GGAGCGGAACAGTTCGACGAAGAAACACCGAGTGGGAGGAGACAAAGATCCTTCTTCTTC 537
Query 610 AACTACTTCATATTTAGCCTCTCGTGCGGTGCCTTGATAGCCGTCACGGTCGTGGTCTGG 669
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 538 AACTACTTCATATTTAGCCTCTCGTGCGGTGCCTTGATAGCCGTCACGATCGTGGTCTGG 597
Query 670 CTCGAAGACAACAAAGGCTGGTCTTATGGCTTCGGTGTCTCCACAGCCGCGATCCTGATC 729
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 598 CTCGAAGACAACAAAGGCTGGTCTTATGGTTTCGGTGTCTCCACGGCCGCGATCTTGATC 657
Query 730 TCGGTCCCGGTTTTCTTGGCCGGTTCTCGCGTTTATCGCCTCAAGGTTCCTAGTGGAAGT 789
||||| ||||||||||||||||| |||||| |||||| |||||||||||| |||||||||
Sbjct 658 TCGGTGCCGGTTTTCTTGGCCGGATCTCGCTTTTATCACCTCAAGGTTCCCAGTGGAAGT 717
Query 790 CCAATCACGACTCTGTTCAAAGTGTTAACCGCTGCTTTATACGCTAAATATAAGAAAAGA 849
|||||||||||||| ||||| || ||||| |||||||| |||||||| ||||||||||||
Sbjct 718 CCAATCACGACTCTATTCAAGGTCTTAACGGCTGCTTTCTACGCTAAGTATAAGAAAAGA 777
Query 850 AGAACTTCAAGAATTGTTGTAACGTGTCACACAAGAAATGATTGTGATGACAGCGTAACC 909
||||||||||||| ||||| || ||||| ||||||| ||||||| |||||| |||||||
Sbjct 778 AGAACTTCAAGAAACGTTGTCACTTGTCATACAAGAAGTGATTGTAATGACAACGTAACC 837
Query 910 AAACAAAACTGTGACGGAGATGATGGATTTCTCGGATCTTTCCTAGGTGAAGTTGTGAGA 969
|| |||||||| || ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 838 AAGCAAAACTGCAACAGAGATGATGAATTTCTTGGATCTTTCCTAGGTGAAGTTGTGAGA 897
Query 970 GAGCGTGAATC-ACTACCACGTCCACTCCGTTGTACGGAAGAGCAAGTCAAAGATGTGAA 1028
||||||||||| | | ||||||||||||||||| || ||||| |||| ||||||||||||
Sbjct 898 GAGCGTGAATCGATT-CCACGTCCACTCCGTTGCACTGAAGATCAAGCCAAAGATGTGAA 956
Query 1029 GATAGTCATCAAGATCCTACCTATTTTCATGTCTACCATTATGCTTAACTGTTGTCTAGC 1088
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 957 GATAGTCATCAAGATCTTACCTATTTTTATGTCTACCATTATGCTTAATTGTTGTCTAGC 1016
Query 1089 TCAGCTCTCGACGTTTTCCGTTCAACAAGCTTCCACAATGAACACAAAGCTCGGGTCCTT 1148
||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||| ||
Sbjct 1017 TCAGCTCTCGACGTTTTCCGTCCAACAAGCTTCGACGATGAACACGAAGCTCGGGTCATT 1076
Query 1149 TACTGTCCCACCCGCGGCATTACCAGTTTTTCCAGTGGTCTTCATGATGATCTTAGCTCC 1208
|||||||||||| |||||||||||||| || || || |||||||||||||||||||||||
Sbjct 1077 TACTGTCCCACCGGCGGCATTACCAGTCTTCCCGGTCGTCTTCATGATGATCTTAGCTCC 1136
Query 1209 GACCTATAACCACCTCCTCCTCCCTCTAGCGAGAAAATCAACAAAAACCGAAACCGGCAT 1268
|| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1137 AACTTACAACCACCTCCTCCTCCCTCTAGCTAGAAAAACAACAAAAACCGAAACCGGCAT 1196
Query 1269 AACCCACCTTCAACGCATCGGAACAGGGCTAGTCCTTTCCATAGTCGCAATGGCGGTGGC 1328
|||||| |||||||||||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 1197 AACCCATCTTCAACGCATCGGCACAGGGTTAGTCCTTTCCATAGTAGCAATGGCGGTGGC 1256
Query 1329 AGCCTTAGTGGAAACAAAACGCAAGCACGTCGTTGTTAGTTGCTGCTCAAACAACAACTC 1388
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1257 AGCCTTAGTGGAAACAAAACGCAAGCACGTCGTTGTTACTTGCTGCTCAAACAACAACTC 1316
Query 1389 ATCTTCTTATTCTTCTTCGCCGCTTCCTATAACGTTTCTTTGGGTGGCTATTCAATATGT 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATCTTCTTATTCTTCTTCGCCGCTTCCTATAACGTTTCTTTGGGTGGCTATTCAATATGT 1376
Query 1449 GTTTCTCGGATCAGCCGATCTATTCACTCTAGCCGGTATGATGGAGTTTTTCTTCACCGA 1508
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GTTTCTTGGATCAGCAGATCTATTCACTCTAGCCGGTATGATGGAGTTTTTCTTCACCGA 1436
Query 1509 AGCTCCTTCTACCATGCGTTCCCTTGCAACCTCGCTCTCATGGGCGTCTCTTGCGATGGG 1568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGCTCCTTCTTCGATGCGTTCCCTTGCAACCTCGCTCTCATGGGCGTCTCTTGCGATGGG 1496
Query 1569 ATATTACTTTAGCTCTGTTCTCGTCTCGGCTGTTAATTTCGTAACAGGCTTAAACCATCA 1628
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ATATTACTTGAGCTCTGTTCTCGTCTCGGCTGTTAATTTCGTAACAGGCTTAAACCATCA 1556
Query 1629 CAATCCATGGCTTTTGGGGGAGAATCTAAATCAGTACCATCTCGAGAGATTCTACTGGCT 1688
||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1557 CAATCCATGGCTTCTAGGGAAGAATCTAAATCAGTACCACCTCGAGAGATTCTACTGGCT 1616
Query 1689 CATGTGTGTGCTTAGTGGGATTAATTTCTTGCATTATCTCTTTTGGGCTAGTCGTTATGT 1748
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1617 CATGTGTGTGCTTAGTGGGATTAATTTCTTGCATTACCTCTTTTGGGCTAGTCGTTATGT 1676
Query 1749 GTACCGGTCGAACCAAGGGTA 1769
|||||||||||||||||||||
Sbjct 1677 GTACCGGTCGAACCAAGGGTA 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66429387280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5