BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62740.1
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496456 jgi|Araly1|496456|fgenesh2_kg.8__2272__AT5G62740.1 1554 0.0
> Ahg496456 jgi|Araly1|496456|fgenesh2_kg.8__2272__AT5G62740.1
Length=1096
Score = 1554 bits (841), Expect = 0.0
Identities = 984/1052 (94%), Gaps = 14/1052 (1%)
Strand=Plus/Plus
Query 1 AACTTAGCTCATAAGCATATCTAATCGGAGCTCGGAGAAATTTCGGTTGTGAAGAGAAG- 59
|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 1 AACTTAGCTCTTAAGCAAATCTAATCGGAGAACGGAGAAATTTCGGTTGTGAAGAGACGA 60
Query 60 AAAGATGGGGAATTTGTTTTGTTGTGTGCAAGTGGATCAATCAACGGTAGCGATAAAGGA 119
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 61 AAAGATGGGAAATTTGTTATGTTGTGTTCAAGTGGATCAATCAACGGTAGCGATAAAAGA 120
Query 120 AACATTCGGGAAATTCGAAGATGTTCTTGAGCCTGGTTGCCATTTTCTTCCATGGTGTCT 179
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACATTTGGGAAATTCGAAGAAGTTCTTGAGCCTGGTTGCCATTTTCTTCCATGGTGTCT 180
Query 180 TGGTAGTCAAGTTGCTGGTTACCTCTCTCTAAGGGTTCAGCAATTGGACGTTCGTTGCGA 239
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 181 TGGTAGTCAAGTTGCTGGTTACCTCTCTCTAAGGGTTCAGCAACTAGACGTCCGTTGCGA 240
Query 240 GACAAAGACTAAGGACAATGTGTTTGTTAATGTTGTTGCATCGATTCAGTACCGTGCTTT 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GACCAAGACTAAGGACAATGTGTTTGTTAATGTTGTTGCATCGATTCAGTACCGTGCCTT 300
Query 300 AGCTAATAAGGCAAATGATGCGTACTACAAGCTCAGTAACACAAGGGGTCAGATTCAAGC 359
|||||||||||| |||||||| |||||||| ||||| ||||||||| |||||||||||||
Sbjct 301 AGCTAATAAGGCCAATGATGCCTACTACAAACTCAGCAACACAAGGAGTCAGATTCAAGC 360
Query 360 TTATGTGTTTGATGTTATTAGAGCGAGTGTCCCGAAGTTGCTTCTTGATGATGTCTTTGA 419
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 TTATGTGTTTGATGGTATTAGAGCAAGTGTCCCGAAGTTGCTTCTTGATGATGTCTTTGA 420
Query 420 GCAGAAGAATGATATTGCGAAAGCTGTTGAAGAGGAGCTCGAGAAGGCAATGTCGGCTTA 479
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 GCAGAAGAATGATATTGCTAAAGCTGTTGAAGAGGAGCTCGAGAAGGCTATGTCGGCTTA 480
Query 480 CGGTTATGAGATTGTGCAAACTCTCATTGTTGATATCGAGCCTGATGAACATGTCAAACG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 CGGTTATGAGATTGTGCAAACTCTCATTGTTGATATCGAGCCTGATGAACATGTTAAACG 540
Query 540 GGCCATGAACGAAATCAACGCTGCTGCAAGGATGAGATTGGCTGCAAACGAAAAGGCAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 GGCCATGAACGAAATCAACGCTGCTGCAAGGATGAGATTGGCTGCAAACGAGAAGGCAGA 600
Query 600 GGCAGAGAAAATCCTACAGATTAAGAGAGCTGAAGGTGAAGCTGAGTCCAAGTACCTCTC 659
||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 GGCTGAGAAAATTCTGCAGATTAAGCGAGCTGAAGGTGAAGCTGAGTCCAAGTACCTCTC 660
Query 660 TGGTCTTGGTATCGCCCGTCAGAGGCAGGCGATTGTCGATGGATTACGCGACAGTGTTTT 719
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 661 GGGTCTGGGTATCGCCCGTCAGAGGCAAGCGATTGTAGATGGATTACGCGACAGTGTTTT 720
Query 720 GGGTTTCGCTGTGAATGTCCCTGGGACAACTGCTAAAGATGTGATGGACATGGTGCTAGT 779
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 GGGTTTCGCTGTGAATGTGCCTGGGACAACTGCTAAAGATGTGATGGACATGGTGCTTGT 780
Query 780 TACACAGTACTTTGACACAATGAAGGAGATTGGTGCTAGCTCCAAGTCGTCTGCCGTGTT 839
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 781 TACACAGTACTTTGACACAATGAAGGAGATTGGTGCTAGCTCCAAGTCTTCTGCTGTGTT 840
Query 840 CATACCTCATGGACCAGGAGCGGTTCGTGATGTGGCTTCTCAGATTAGAGATGGCCTTCT 899
|||||| |||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||
Sbjct 841 CATACCGCATGGACCAGGAGCTGTTCGCGATGTTGCTACTCAGATCAGAGATGGCCTTCT 900
Query 900 TCAAGGCTCGTCCGCAAACCTGT---GAAGTGAATTCACTGATTATGTCCTCTTTTCTTT 956
||||||||||||||||||||| | |||||| ||| ||||||||||| |||||||||||
Sbjct 901 TCAAGGCTCGTCCGCAAACCTTTCTTGAAGTGGATTGACTGATTATGTTCTCTTTTCTTT 960
Query 957 TGACTATGGTGTGAT-T-ATCAtc-t-tcttctttcttttggattatgttcgaactcttt 1012
|||||||||||||| | || ||| | |||||||||||||||||||||||||||||||||
Sbjct 961 -GACTATGGTGTGATGTGATTATCATCTCTTCTTTCTTTTGGATTATGTTCGAACTCTTT 1019
Query 1013 tgtt-ttggtttt-c-ttatttctatttgTAT 1041
| || || |||| | || ||| ||||| |||
Sbjct 1020 TTTTCTTTTTTTTTCCTT-TTT-TATTTCTAT 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42697667040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5