BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62750.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496457 jgi|Araly1|496457|fgenesh2_kg.8__2273__AT5G62750.1 1002 0.0
> Ahg496457 jgi|Araly1|496457|fgenesh2_kg.8__2273__AT5G62750.1
Length=673
Score = 1002 bits (542), Expect = 0.0
Identities = 634/676 (94%), Gaps = 16/676 (2%)
Strand=Plus/Plus
Query 3 TGTAAGAAAGTTTTCTAGATTTAAGCACTATCTAAGAAAAACAAAAT------CAAA-CT 55
||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 1 TGTAAGAAAGTTTTCTAGATTTAAGCACTATCTAAGAAAGACAAAATCAAACCCAAATCT 60
Query 56 CATAAAGAATAATGGGAGAAACAGAAGAGAAAGTGAAGAACCA---TGATAacaaagaag 112
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 CATAAAGAATAATGGGAGAAACAGAAGAGAAAGTGAAGAACCATGGTGATAACAAAGAAG 120
Query 113 aggaacacaacaaggctgagaaagctgagaagaaggagaagaagaaggataaagataaga 172
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 121 AGGAACACAACAAGGCTGAGAAAACTGAGAAGAAGGAGAAGAAGAAAGATAAAGATAAGA 180
Query 173 aggataagaaCGAGGACGATAAAAATGGTGGAGGagaagaaggggaagatcaagagaaga 232
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 AGGATAAGAACGAGGACGATAAAAATGGTGGAGGAGAAGAAGGAGAAGATCAAGAGAAGA 240
Query 233 agagcaagaagaaagataagaaagcgaagaaagagaagaaccctgaagataagaaagatc 292
||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGAGCTAGAAGAAAGATAAGAAGGCGAAGAAAGAAAAGAACCCTGAAGATAAGAAAGATC 300
Query 293 cagagaagttgaagatgaagcttcagaagattgaagaaaagattcaagCTATGGTCTTAA 352
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGAGAAATTGAAGATGAAGCTTCAGAAGATTGAAGAAAAGATTCAAGCTATGGTCTTAA 360
Query 353 AGAAAGATGAGATTGTGAAGCTTATTCATGATGCTGAACAAGCTAAGCCTAGTACTGCTG 412
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 AGAAAGATGAGATTGTGAAGCTTATTCATGAGGCTGAACAAGCTAAGCCTAGTACTGCTG 420
Query 413 CAGTAGATGCACCACCACCAACTAACTAATTCAAATACACAAATTATATACTACAATAAG 472
||||||||||||||||||||||||||||||||||||||| || |||||| |||| ||||
Sbjct 421 CAGTAGATGCACCACCACCAACTAACTAATTCAAATACA-AA-TTATATGCTACCTTAAG 478
Query 473 TTAACTAATATATTTGTCAATAACAAATGCTGCTGAATGTTATTTTCAGCGTATCTTGGT 532
||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||
Sbjct 479 TTAACTAATATATATGCCAATTACAAATGCTGATGAATGTTATTTTCAGCGTATCTTGGC 538
Query 533 ATAGG-TCTTTGTTTTGTTTTGTTTGATACCAATCAGAGTTTGCTTGTATACTATGTGTT 591
||||| | |||||||||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct 539 ATAGGGTTTTTGTTTTGTTTTGTTTGATTTCAATCAGAGTTTGCTTGTAAAATATGTGTT 598
Query 592 TGTAAATTGTACaaaaaaaa-CTGTTTT-AATATAATACGTTTCAGCTTAATACATATTG 649
|||| ||||||||||| | ||||||| |||||||||| ||||||||||||||||||||
Sbjct 599 -GTAAGTTGTACAAAAACTATCTGTTTTTAATATAATACTTTTCAGCTTAATACATATTG 657
Query 650 GTAATGCTGATGTATA 665
||||||||||||||||
Sbjct 658 GTAATGCTGATGTATA 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5