BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62760.1
Length=2359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496458 jgi|Araly1|496458|fgenesh2_kg.8__2274__AT5G62760.1 2811 0.0
> Ahg496458 jgi|Araly1|496458|fgenesh2_kg.8__2274__AT5G62760.1
Length=2108
Score = 2811 bits (1522), Expect = 0.0
Identities = 1982/2182 (91%), Gaps = 120/2182 (5%)
Strand=Plus/Plus
Query 24 TGTTCATCAATTTCATCACATAAACCCTAATTTAGATTTTAGGGTTCATCTGAAAACTCT 83
|||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1 TGTTGATCGATTTCATCACATAAACCCTAATTTAGATTTCAGGGTTCATCTG--AA---- 54
Query 84 TGCAATATTTACAAGCTATTAAATCATCAACAATGGATAATAATTACCAGAACTatcatc 143
|| | || || | ||||||||||||||||||||||||| | | ||||||||||
Sbjct 55 --CAGT-CTT----GC-A--AAATCATCAACAATGGATAATAATTTCGACAACTATCATC 104
Query 144 atcatcataatcataatcatcaACAACAATGGCGTCCAGCACCAACACAGCCAAACATAT 203
| | | | | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 105 A-C--C---A-C-----CATCATCAACAATGGCGTCCAGCACCAACACAGCCAAACATAT 152
Query 204 GCCCGATTTGTACAGTGCCTCACTTCCCTTTTTGCCCACCGTATCCTCCTCCATCTTCTT 263
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 153 GCCCGATTTGTACAGTGCCTCACTTCCCCTTTTGTCCACCGTATCCTCCTCCATCTTCTT 212
Query 264 TCGCTTACAACCCCAACTT---TCCTCCTCCTCCTC---ACCTCAATTCACCTCGTCCTG 317
|| || ||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 213 TCCCTCACAACCCCAACTTCCCTCCTCCTCCTCCTCCTCACCTCAATTCACCTCGTCCTG 272
Query 318 GATTCGATTCCTTCACCGGACCACCGGTTCGACCACCGCAAAATCACTATCCTCCGTGGC 377
| |||||||| ||||||||||||||||||| ||||||||||| ||||| ||| || ||||
Sbjct 273 GTTTCGATTCGTTCACCGGACCACCGGTTCCACCACCGCAAATTCACTTTCCGCCCTGGC 332
Query 378 AACCTCACCACGGAAATCAATGGCGACCAGTT------G-C---CGT-------T-GATG 419
||||||||||| |||||||||||||||| ||| | | ||| | ||||
Sbjct 333 AACCTCACCACAGAAATCAATGGCGACCGGTTTCTTCTGACTATCGTAGCGCCGTTGATG 392
Query 420 TTGATAGGGAAGCTGATCGGAGCTATAAGAGAGCTCGGATTGATACGATCGCAGGTGGTT 479
||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 393 TTGATAGGGAAGCTGATCGGAGCTATAAGCGAGCTCGGATTGATGCGATCGGTGGTGGTT 452
Query 480 CTCCGGGTTACGGTGTTTCTGAGAGTCCGAGTCCTCGGATCTCTTGGGAAAATGAACGAA 539
|||| |||||||||||||| | | | | | || || |||||| |
Sbjct 453 CTCCCGGTTACGGTGTTTC--A---T--G-G-----G-AT--------AA--TGAACGGA 488
Query 540 GGTTGAAGATGGTTCGCGATCATGGTTATGGTTTAGCTGCGCCGTC-C-A--A-T-A-T- 591
||||||||||||||||||||||||||||||||||| |||||||||| | | | | | |
Sbjct 489 GGTTGAAGATGGTTCGCGATCATGGTTATGGTTTAACTGCGCCGTCTCCAGGAGTGAATT 548
Query 592 -AGAGATGAATCATCAGTATGGGAGTGAATTTAGGAATGGAGGTCAATTTAATGGTGTAG 650
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 549 TAGAGATGAATCATCAGTATGGGAGTGAATTTAGGAATGGAGGTCAGTTTAATGCTGTAG 608
Query 651 CTCCTCTTCCTCCTCCTCCGCCTCATCATCCGCCTCCGTACGGTGGCTATTTCAGCGGTT 710
|||||| | ||||| |||||||||| | |||||| |||||||| ||||||
Sbjct 609 CTCCTC--C-TCCTC---------ATCATCCGCCGCTGTACGGAGGCTATTTTAGCGGTC 656
Query 711 CTAATGGTCAGCCTCCTCTTCCGGTTTCTCCACCACCGCCTTTGCCT---TC--ATC--- 762
|||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 657 CTAATGGTCAGCCTCCTCTTCCGGTTTCACCACCACCGCCTTTGCCTCCATCTCATCCGC 716
Query 763 --TC--ATCCTTCTTCCTTGTTTCCTGTCACTACTAATTCGTCACCAACGATCCCTCCGT 818
|| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
Sbjct 717 CGTCTCATCCTTCTTCCCTGTTTCCCGTCACTACTAATTCGTCACCAACGATCCCTCCAT 776
Query 819 CATCATCAT-ATCCTCAGATGCCTAATGCTTCTCCATCTTCTGCACAACTAGCACCAACT 877
||||||||| | ||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 777 CATCATCATTA-CCTCAAATGCCTAATGCTTCTCCATCTTCTGCACAATTAGCACCTACT 835
Query 878 CGGTCTAAAGTGATTGATGTGTCTCATTTGCTGAAGCCACCTCATCGATCTACTCGTCCA 937
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 836 CGGTCTAAAGTGATTGATGTGTCCCATTTGCTGAAGCCTCCTCATCGATCTACTCGTCCA 895
Query 938 GATCACTTTGTAATTATTCTTCGAGGGCTACCAGGTAGTGGGAAGAGTTATTTAGCCAAG 997
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 896 GATCACTTTGTAATTATCCTTCGAGGGCTACCAGGCAGTGGGAAGAGTTATTTAGCCAAG 955
Query 998 TTGTTGCGTGACGTCGAGGTAGAAAATGGTGGTAGTGCTCCACGAATCCATTCTATGGAT 1057
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 956 TTGTTGCGTGACATCGAGGTAGAAAACGGTGGTAGTGCTCCACGAATCCATTCTATGGAT 1015
Query 1058 GATTACTTCATGACTGAAGTTGAGAAGGTTGAGGAGAGTGATTCAACTTCTTTAAGCTCT 1117
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1016 GATTACTTCATGACTGAAGTTGAGAAGGTTGAGGAGAGTGATTCAACTTCTTCAAGCTCT 1075
Query 1118 GGTAGAAGCAAAAGACCTATTGTGAAGACGGTCATGGAATACTGCTACGAACCTGAGATG 1177
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GGTAGAAGCAAAAGACCTAATGTGAAGACGGTCATGGAATACTGCTACGAACCTGAGATG 1135
Query 1178 GAAGAGGCGTATCGTTCAAGCATGTTGAAAGCTTTTAAGAGGACACTTGAAGATGGGGCT 1237
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1136 GAAGAGGCTTATCGTTCAAGCATGCTGAAAGCTTTTAAGAGGACACTTGAAGATGGAGCC 1195
Query 1238 TTCAGCTTTGTAATCGTTTGTTTTCTGGAATTGACCGTTTCTTGCTGGTATATGTCACTC 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTCAGCTTTGTAATCGTTTGTTTTCTGGAATTGACCGTTTCTTGCTGGTATATGTCACTC 1255
Query 1298 ATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTACTCAGTTTTGGGCAACAGCA 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTACTCAGTTTTGGGCAACAGCA 1315
Query 1358 AAGAGATCTGGATATGAAGCTTACATATTGGAAGCAACATACAAGGACCCAACTGGCTGT 1417
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1316 AAGAGATCTGGATATGAAGCTTACATATTGGAAGCAACATACAAGGACCCGACTGGCTGT 1375
Query 1418 GCTGCAAGAAACGTACATGGCATCACAGTAGATCAAGTACAGCAGATGGCAGAACAATGG 1477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1376 GCTGCAAGAAACGTACATGGCATCACACTAGATCAAGTACAGCAGATGGCAGAACAATGG 1435
Query 1478 GAAGAAGCTCCTTCATTGTACATGCAGCTTGATATCAAGTCTTTTACGCGGTGGGATGAC 1537
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1436 GAAGAAGCTCCATCATTGTACATGCAGCTGGATATCAAGTCCTTTACGCGGTGGGATGAT 1495
Query 1538 CTGAAGGAGAATGAAATCCAGGAGGTGGATATGGACATGGAAGATGATTTCGGACTGCCA 1597
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CTGAAGGAGAATGGAATCCAGGAGGTGGATATGGACATGGAAGATGATTTCGGACTGCCA 1555
Query 1598 GAAAGAAAATCCGATAACAGTACCCAGTCAGAAGAAAAGGGTGCGACAGAGGGCTCTTAC 1657
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1556 GAAAGAAAATCCGATAACAGTACCCAGTCAGAAGAAAAGGGTGCGACATTGGGCTCTTAC 1615
Query 1658 AAAAGTGAGAGTAAATGGGATGCAGAATCTGGCTCCCGTACAGAAGAAGTGAAAGAACTA 1717
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1616 AAAAGTGAGAGTAAATGGGAAGCAGAATCTGGCTCCCGTACAGAAGAAGTGAAAGAACTA 1675
Query 1718 AGCAGAAGTAAATGGTCAAATGTAGAGGAAGATGAAACAGAGAACTCTCAGAGCATGAGA 1777
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1676 AGCAGAAGTAAATGGTCAAATGTAGAAGAAGATGAAACAGAGAACTCTCAGAGCGTGAGA 1735
Query 1778 CGAAACTCCAAATCTCTTCCCAAATCAAGCCAAGAACGCCAGCGGAAAGGCAAATCTGTT 1837
|||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct 1736 CGAAACTCCAAATCTCTTCCCAAATCAAGCCA-G--CG---G---AAAGGCAAATCTGTT 1786
Query 1838 TGGTGGGGCGATAAGGGTGGAGACGCGGGGTTTTCAATTGGTGCTGCAAGGAATATGAAC 1897
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1787 TGGTGGGGCGATAAGGGTGGAGATGCGGGTTTTTCAATTGGTGCTGCAAGGAATATGAAC 1846
Query 1898 ATGCCATCCTTAATTATAGGTCCAGGATCAGGATACAACGTGAAATCAAATCCTCTATCG 1957
|||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1847 ATGCCATCCTTAGTTATAGGTCCAGGATCAGGATACAACTTGAAATCGAATCCTCTATCG 1906
Query 1958 GCAGAAGAGAGTCGTGCACTAGCTGATGCAATTGGAAAAGCAAAGGTAAGAGGAATTTTC 2017
| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1907 GAAGAAGAGAGTCGTGCACTCGCTGATGCAATTGGGAAAGCAAAGGTAAGAGGAATTTTC 1966
Query 2018 CAGGATCAGCTTAGAGCAGAGCGTGAGTCTTTCAAAGCTGTTTTTGACAAGAGACATGTA 2077
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1967 CAGGATCAGCTTAGAGCAGAGCGTGAGTCTTTCAAAGCTGCTTTTGACAAGAGACATGTA 2026
Query 2078 CGAATCGTTACAAAGGATAAGTAAGTGTATGATTTTCTCCGGGTAATCAAAATTTATTTT 2137
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2027 TGAATCGTTACAAAGGATAAGTAAGTGTATGATTTTCTCTGGGTAATCAAAATTTATTTT 2086
Query 2138 GCCTGATCCACGAGAATTATCA 2159
|||||||||| |||||| ||||
Sbjct 2087 GCCTGATCCATGAGAATCATCA 2108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88864541585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5