BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62770.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496460 jgi|Araly1|496460|fgenesh2_kg.8__2276__AT5G62770.1 1323 0.0
> Ahg496460 jgi|Araly1|496460|fgenesh2_kg.8__2276__AT5G62770.1
Length=1072
Score = 1323 bits (716), Expect = 0.0
Identities = 991/1112 (89%), Gaps = 65/1112 (6%)
Strand=Plus/Plus
Query 10 TCTCTCTCAAAAACGTTTCAGTTTCAGAAAACAG--AGC--A-A-G-AAGAAACAACTTT 62
|||||||| ||||||||||||||||||||| || | | | | | |||||||||||||
Sbjct 1 TCTCTCTCTCAAACGTTTCAGTTTCAGAAAAGAGAAAACTGAGAGGCAAGAAACAACTTT 60
Query 63 CTCTCAAATGCAGACGAGTCGGTTACTCTCCTTCTCCTCTAACTCTCCGAGTTTTGGCAG 122
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 61 CTCTCAAATGCAGACGAGTCGGTTACTCTCCTTTTCCTCTAACTCTCCGAGCTTTGGCAG 120
Query 123 CTTCTCCTCCGCCGTTGACCTCGCTGCAATCGCCGCTCGAGTCGTCGAAGAATTCAGAGA 182
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 121 CTTCTCCTCCGCCGTAGACCTCGCCGCAATCGCCGCCCGAGTCGTCGAAGAATTCAGAGA 180
Query 183 TCACGACCAAACACAATCCGATTCTTCTCCCCACCGCGACGACGATAATGATTCCGACTT 242
||| || || |||||| |||| | |||| ||||||||||||||||||||||||||| ||
Sbjct 181 TCAGGAGCAGACACAACCCGA--C-TCTCACCACCGCGACGACGATAATGATTCCGATTT 237
Query 243 CGCTTTCGACTGTCCAAGCAACACGTGTTCTCAGCCTCTCGCTACCGCCGACGAGATTTT 302
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 238 CGCTTTCGATTGTCCAAGCAACACGTGTTCTCAACCTCTCGCTACCGCCGACGAGATTTT 297
Query 303 CTGTAACGGTCAGATCCGTCCGTTGAATCCGTA------CGG--T-GGAAATGCTCCGGT 353
||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 298 CTGTAACGGTCAGATCCGTCCGTTGAATCCGTACGGTGGCGGAATCGGAAATGCTCCTGT 357
Query 354 GGAATCTCAACCGACGAGTAAGATTACTACTCTTCCT-CCTCGTCGTCGTAGACCGGCGT 412
||||||||| | | | || |||||||| |||| |||||||||| |||||||||||
Sbjct 358 AGAATCTCAA-C--C--G--AG--TACTACTC-TCCTCCCTCGTCGTCATAGACCGGCGT 407
Query 413 TGAGGAAACTGATGAGCGAGGATCGAGATCCGGCTTCGAATTCTTCGTCGGAAGCTGAAG 472
|||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 408 TGAGAAAACTGATGAGCGAGGATCGAGATCCGACTTCGAATTCTTTTTCGGAAGCTGAAG 467
Query 473 AGGATCTTACTGGTGTTCCTCCGGAGACGTACTGTGTATGGAAACCTAAACAATCGAATT 532
||||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 468 AGGATCTAACCGGAGTTCCGCCGGAGACGTACTGTGTATGGAAACCAAAACAATCGAATT 527
Query 533 CCGGAGATGATGATCTTCAAAGACTTTCGTCTTCTCCGTCAC-ACAGCAAAATCAAAAGC 591
|| ||||||||||||||||| | || |||||||||||||||| | |||||||||||||||
Sbjct 528 CCAGAGATGATGATCTTCAAGGTCTCTCGTCTTCTCCGTCACGA-AGCAAAATCAAAAGC 586
Query 592 CATTCAGCTGGGTTTTCGAAACGTTGGAAGCTCCGGAATCTTCTGTACGTTAGAAGCAGT 651
||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 587 CATTCAGCTGGATTCTCGAAACGTTGGAATCTCCGGAATCTTCTGTACGTTAGAAGCAGC 646
Query 652 AGTGAAGGAAACGATAAGCTCGTCTTTCCGGCGCCGGTTAAGAAGAACGACGAGACGGTC 711
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 647 AGCGAAGGAAACGATAAGCTCGTGTTTCCGGCGCCGGTTAAGAAGAACGACGAGACTGTG 706
Query 712 TCCGATCA--aagagaag---aag-aggaaccgccgtcaaaggtggacggagaggaagaa 765
|||||||| || | | ||| ||||| | | ||| ||| ||| |||||||||
Sbjct 707 TCCGATCAGGAACCGCCGTCCAAGGAGGAA--G--G--AAA--TGG-CGGCGAGGAAGAA 757
Query 766 ggaagggaaagggaagagaCAAAACGACAGACGTATGTGCCGTATAGAAAGGATATGATT 825
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 GAAAGGGAAAGGGAAGAGACAAAACGACAGACGTATGTGCCGTATAGAAAGGATATGATT 817
Query 826 GGAATATTGAAAAATGTGAATGGGCTAAGTCGTCATTTACGTCCTTTTTGATGGTGACGT 885
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GGAATATTAAAAAATGTGAATGGGCTAAGTCGTCATTTACGTCCTTTTTGATGGTGACGT 877
Query 886 GGCTCTCAGAAGACGCGGACTTTGGGTGGGCTTCGGtttctttctttttcctactttttt 945
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GGCTCTCC-AAGACGCGGATTTTGGGTGGGCTTCGGTTTCTTTCTTTTTCCTACTTTTTT 936
Query 946 tcttttccttttttacttttatttagtttCCGAGAAAATCTTGAGTGTTGGCGAGAAAGT 1005
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 T-TTT-C-TTTTTTACTTTTATTTAGTTTCCGAGAAAATCTTGAGTGTTGGCGAGAAAGT 993
Query 1006 AAATAATTT-ATTTTCGAATATTTTTAATGTCTCGGTTTATAAAATAGATAATGTATAAG 1064
||||||||| |||||||||||||||||| | | |||| || ||| || | |
Sbjct 994 AAATAATTTTATTTTCGAATATTTTTAAA-TA--G----ATAATGTA--TAA-GT-T--G 1040
Query 1065 TTTTGGTTATTTGATTATTGGAATGGAGGAGA 1096
||||||| |||||||||||||||||||||||
Sbjct 1041 TTTTGGTGGTTTGATTATTGGAATGGAGGAGA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5