BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62790.2
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951066 jgi|Araly1|951066|scaffold_802953.1 1799 0.0
> Ahg951066 jgi|Araly1|951066|scaffold_802953.1
Length=1471
Score = 1799 bits (974), Expect = 0.0
Identities = 1044/1079 (97%), Gaps = 0/1079 (0%)
Strand=Plus/Plus
Query 568 AGGAGATTTAAGCCTGCATTGGTTGCTGTTAGAAACGAGTCACTGATTAATGAGCTTAAA 627
||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 393 AGGAGATTTAAGCCTGCGTTGGTTGCTGTTAGAAACGAGTCATTGATCAATGAGCTTAAA 452
Query 628 GAGGCTTTAGCTGATTTGGACTATAAACTCGAGATTATTCCAGGAGAGCAAGGAGTGATT 687
||||||||||| ||| |||||||||||| |||||| |||||||| |||||||||||||||
Sbjct 453 GAGGCTTTAGCGGATCTGGACTATAAACCCGAGATAATTCCAGGGGAGCAAGGAGTGATT 512
Query 688 GAGGTTGCCCGACATCCTGAAGCTGTAACCGTTGTTACCGGAATAGTAGGTTGTGCGGGA 747
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 513 GAGGTTGCCCGACACCCTGAAGCTGTAACTGTTGTTACCGGAATAGTAGGTTGTGCGGGA 572
Query 748 CTAAAGCCTACGGTTGCTGCAATTGAAGCAGGAAAGGACATTGCTCTTGCAAACAAAGAG 807
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 573 CTTAAGCCTACGGTTGCTGCAATTGAAGCAGGAAAAGACATTGCTCTTGCAAACAAAGAG 632
Query 808 ACATTAATCGCAGGTGGTCCTTTCGTGCTTCCGCTTGCCAACAAACATAATGTAAAGATT 867
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 633 ACATTAATCGCAGGTGGTCCTTTCGTGCTTCCGCTTGCCAACAAACATAATGTTAAGATT 692
Query 868 CTTCCGGCAGATTCAGAACATTCTGCCATATTTCAGTGTATTCAAGGTTTGCCTGAAGGC 927
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CTTCCGGCAGATTCAGAACATTCTGCCATATTTCAGTGTATTCAAGGTTTGCCTGAAGGT 752
Query 928 GCTCTGCGCAAGATAATCTTGACTGCATCTGGTGGAGCTTTTAGGGATTGGCCTGTCGAA 987
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 753 GCTCTACGCAAGATAATCTTGACTGCATCTGGTGGAGCTTTTAGGGATTGGCCTGTTGAA 812
Query 988 AAGCTAAAGGAAGTTAAAGTAGCGGATGCGTTGAAGCATCCAAACTGGAACATGGGAAAG 1047
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 AAGCTCAAGGAAGTTAAGGTAGCGGATGCGTTGAAGCATCCAAACTGGAACATGGGAAAG 872
Query 1048 AAAATCACTGTGGACTCTGCTACGCTTTTCAACAAGGGTCTTGAGGTCATTGAAGCGCAT 1107
||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 873 AAAATCACTGTGGACTCAGCTACGCTTTTCAATAAGGGTCTTGAGGTCATCGAAGCTCAT 932
Query 1108 TATTTGTTTGGAGCTGAGTATGACGATATAGAGATTGTCATTCATCCGCAAAGTATCATA 1167
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 933 TATTTGTTTGGAGCTGAGTATGACGATATAGAGATTGTCATTCATCCTCAAAGTATCATA 992
Query 1168 CATTCCATGATTGAAACACAGGATTCATCTGTGCTTGCTCAATTGGGTTGGCCTGATATG 1227
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 CACTCCATGATCGAAACACAGGATTCATCTGTGCTTGCTCAATTGGGTTGGCCTGATATG 1052
Query 1228 CGTTTACCGATTCTCTACACCATGTCATGGCCCGATAGAGTTCCTTGTTCTGAAGTAACT 1287
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1053 CGTTTACCGATCCTCTACACCATGTCATGGCCTGATAGAGTTCCTTGTTCTGAAGTAACT 1112
Query 1288 TGGCCAAGACTTGACCTTTGCAAACTCGGTTCATTGACTTTCAAGAAACCAGACAATGTG 1347
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TGGCCAAGACTAGACCTTTGCAAACTCGGTTCATTGACTTTCAAGAAACCAGACAATGTG 1172
Query 1348 AAATACCCATCCATGGATCTTGCTTATGCTGCTGGACGAGCTGGAGGCACAATGACTGGA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 AAATACCCATCCATGGATCTTGCTTATGCTGCTGGACGAGCTGGAGGCACAATGACTGGA 1232
Query 1408 GTTCTCAGCGCCGCCAATGAGAAAGCTGTTGAAATGTTCATTGATGAAAAGATAAGCTAT 1467
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1233 GTTCTCAGCGCCGCCAATGAGAAAGCCGTTGAAATGTTCATTGATGAAAAGATAAGCTAT 1292
Query 1468 TTGGATATCTTCAAGGTTGTGGAATTAACATGCGATAAACATCGAAACGAGTTGGTAACA 1527
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 TTAGATATCTTCAAGGTTGTGGAATTAACATGCGATAAACATCGAAACGAGTTGGTAACA 1352
Query 1528 TCACCGTCTCTTGAAGAGATTGTTCACTATGACTTGTGGGCACGTGAATATGCCGCGAAT 1587
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1353 TCACCGTCTCTTGAAGAGATTGTTCACTATGACTTGTGGGCGCGTGAATATGCCGCGAAT 1412
Query 1588 GTGCAGCTTTCTTCTGGTGCTAGGCCAGTTCATGCATGAAGAATTGGTTGTTGGAAGAA 1646
|||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||||
Sbjct 1413 GTGCAGCTTTCTTCTGGTGCGAGGCCAGTCCATGCCTGACGAATTGGTTGTTGGAAGAA 1471
Score = 628 bits (340), Expect = 3e-179
Identities = 378/395 (96%), Gaps = 7/395 (2%)
Strand=Plus/Plus
Query 108 ATTCGATTTTTAAAAGACTCTGATGATGACATTAAACTCACTATCTCCAGCTGAATCCAA 167
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTCGATTTTTAAAAGA--CTGATGATGACATTAAACTCACTATCTCCAGCTGAATCCAA 58
Query 168 AGCTATTTCTTTCTTGGATACCTCCAGGTTCAATCCAATCCCT-AAACTCTCAGGTGGGT 226
|||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 59 AGCTTTTTCTTTCTTTGATACCTCCAGGTTCAATCCAATCCCTCAAA-TCTCAGGTGGGT 117
Query 227 TTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTTGGAAAAGGTGTTAAGTGTTCAGTGA 286
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 118 TTAGTTTGAGGAGGAGGAATCAAGGGAGAGATTTTGGAAAAGGTGTGAAGTGTTCAGTGA 177
Query 287 AAGTGCAGCAGCAACAACAACCTCCTCCAGCATGGCCTGGGAGAGCTGTCCCTGAGGCGC 346
||||| | |||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 AAGTG--G-AGCAGCAGCAACCTCCTCCAGCATGGCCTGGGAGAGCTGTTCCTGAGGCGC 234
Query 347 CTCGTCAATCTTGGGATGGACCAAAACCCATCTCTATCGTTGGATCTACTGGTTCTATTG 406
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 235 CTCGTCAATCTTGGGATGGACCTAAACCCATCTCTATTGTTGGATCTACTGGTTCTATTG 294
Query 407 GCACTCAGACATTGGATATTGTGGCTGAGAATCCTGACAAATTCAGAGTTGTGGCTCTAG 466
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 295 GCACTCAGACATTGGATATTGTGGCTGAGAATCCTGACAAATTTAGAGTTGTGGCTCTAG 354
Query 467 CTGCTGGTTCGAATGTTACTCTACTTGCTGATCAG 501
|||||||||||||||||||||||||||||||||||
Sbjct 355 CTGCTGGTTCGAATGTTACTCTACTTGCTGATCAG 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5