BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62800.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358487 jgi|Araly1|358487|fgenesh1_pg.C_scaffold_8002274 1190 0.0
Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1 183 2e-45
> Ahg358487 jgi|Araly1|358487|fgenesh1_pg.C_scaffold_8002274
Length=852
Score = 1190 bits (644), Expect = 0.0
Identities = 777/841 (92%), Gaps = 10/841 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGATAGCAACTCTCACCCGCAAAATCAAACATCAAAAAG-AAAAAGCTCTCACCC 59
||||||| ||||||||||||| |||| | |||| ||| ||||| ||||| || ||||
Sbjct 1 ATGGAGGGTAGCAACTCTCACTCGCATATTCAATTATC-AAAAGAAAAAATTTCGCACCG 59
Query 60 GCAAAAGAAGCAACGTAT-G-G-AGAATGAAACACGATCGGCTAAGTTGTTGGATCTTGA 116
|||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||
Sbjct 60 GCAAAAGAAGCAACGTATGGAGAAGAATGAAACACGATCGGCTAAGTTGTTGGATCTAGA 119
Query 117 TGTTCTTGACTGTCCGGTTTGCTTCGAGCCGCTCACTATTCCTACCTTTCAGTGTGATGA 176
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTTCTTGACTGTCCGATTTGCTTCGAGCCGCTCACTATTCCTACCTTTCAGTGTGATGA 179
Query 177 TGGACATATAGTTTGCAATTTTTGCTTTGCCAAAGTGAGTA--A-CAAGTGCCCTGGTCC 233
||||||| ||||||||| ||||||||||||||||||||||| | || ||||||||||||
Sbjct 180 TGGACATCTAGTTTGCAGTTTTTGCTTTGCCAAAGTGAGTAGTAACAGGTGCCCTGGTCC 239
Query 234 TGGGTGTGATTTACCCATTGGTAATAAGCGATGCTTCGCAATGGAGAGGGTTCTCGAATC 293
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||| |||||
Sbjct 240 TGGGTGTGATTTACCCATTGGTAACAAGCGATGCTTCTCAATGGAGAAGGTTCTTGAATC 299
Query 294 AGCCTTTGTTCCATGTCAAAATACTGAGTTTGGCTGCACAAAAAGTGTCTCTTATGAAAA 353
||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||| ||
Sbjct 300 AGCCTTTGTTCCATGTCCAAATACTGAGTTTGGCTGCACAGAGAGTTTCTCTTATGGGAA 359
Query 354 AGTGTCAAGTCACGAAAAGGAATGCAACTACTCTCAATGCTCTTGCCCTAACCTCGAATG 413
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 AGTGTCAAGTCATGAAAAGGAATGCAACTACTCTCAATGCTCTTGCCCCAACCTCGAATG 419
Query 414 CAATTACACTGGCTCATATAACATCATCTACGGTCACTTTATGCGTCGCCATCTTTACAA 473
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 CAATTACACTGGCTCATACAACATCATCTACGGTCACTTTATGCGTAGCCATCTTTACAA 479
Query 474 TAGTACGATC-GTTTCCTCCAAATGGGGATATTCCACTGTTGATGTTCTAATAAACATCA 532
||||||||| ||| |||||| ||||||||||||| |||||||||| | ||||||||||
Sbjct 480 TAGTACGATATGTT-CCTCCATATGGGGATATTCCTCTGTTGATGTCCGGATAAACATCA 538
Query 533 AAGAAAAGGTTTCAGTTCTCTGGGAATCTCGTCAGAAACTTTTGTTTGTAGTTCAGTGTT 592
| |||||||||| ||||||||||||||||| ||||||||| |||||||| || |||||||
Sbjct 539 ATGAAAAGGTTTTAGTTCTCTGGGAATCTCTTCAGAAACTATTGTTTGTGGTCCAGTGTT 598
Query 593 TCAAGGAGCGACATGGTGTTTATGTTACTGTTAGACGCATCGCACCACCTGCTTCAGAAT 652
||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 599 TCAGGGAGCGACATGGTGTTTATGTTACTGTTAGACGCATTGCACCATCTGCTTCAGAAT 658
Query 653 TCAAGAAGTTCTCGTATCGTCTTTCGTATAGTATCGACGGACATAATGTTACTTACGAAT 712
| ||||||||||||||| |||||||||||||||| || ||||| ||||||||||||||||
Sbjct 659 TAAAGAAGTTCTCGTATTGTCTTTCGTATAGTATAGATGGACACAATGTTACTTACGAAT 718
Query 713 CACCAGAAGTAAAGAGGCTTCTTGAAGTGAATTCTCAAATCCCTGATGACAGTTTCATGT 772
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 719 CACCAGAAGTGAAGAGGCTTCTTGAAGTAAATTCTCAAATCCCTGATGAGAGTTTCATGT 778
Query 773 TTGTCCCTAACTGTTTACTGCATGGTGAAATGTTGGAGTTGAAGCTTGGCATCAAGAAGT 832
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGTCCCTAACTGTTTATTGCGTGGTGAAATGTTGGAGTTGAAGCTTGGCATCAAGAAGT 838
Query 833 T 833
|
Sbjct 839 T 839
> Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1
Length=1896
Score = 183 bits (99), Expect = 2e-45
Identities = 124/136 (91%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 909 AAAGCCTGCTAATGAGGTTCAGCAAGTTACCATTGCTCAGGAAACTGTTATGGAGGATCC 968
||||||||||||||||||||| |||| |||||| |||||||||||||||| | |||||||
Sbjct 230 AAAGCCTGCTAATGAGGTTCAACAAGCTACCATAGCTCAGGAAACTGTTAAGCAGGATCC 289
Query 969 TCCAACGTCTCTGTTTAAGAATTCAGTACCAATTCGAGAGGATCAAATTCAGAACGCTAT 1028
|||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 290 TCCAACATCTGTGTTTAAGAATTCAGAACCAATTCGAGAGGATCAAATTCAGAACGCTAT 349
Query 1029 CACAAATTCCATTCGC 1044
|| || ||| |||||
Sbjct 350 CA-AATTTCT-TTCGC 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5