BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62800.1 Length=1047 Score E Sequences producing significant alignments: (Bits) Value Ahg358487 jgi|Araly1|358487|fgenesh1_pg.C_scaffold_8002274 1190 0.0 Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1 183 2e-45 > Ahg358487 jgi|Araly1|358487|fgenesh1_pg.C_scaffold_8002274 Length=852 Score = 1190 bits (644), Expect = 0.0 Identities = 777/841 (92%), Gaps = 10/841 (1%) Strand=Plus/Plus Query 1 ATGGAGGATAGCAACTCTCACCCGCAAAATCAAACATCAAAAAG-AAAAAGCTCTCACCC 59 ||||||| ||||||||||||| |||| | |||| ||| ||||| ||||| || |||| Sbjct 1 ATGGAGGGTAGCAACTCTCACTCGCATATTCAATTATC-AAAAGAAAAAATTTCGCACCG 59 Query 60 GCAAAAGAAGCAACGTAT-G-G-AGAATGAAACACGATCGGCTAAGTTGTTGGATCTTGA 116 |||||||||||||||||| | | |||||||||||||||||||||||||||||||||| || Sbjct 60 GCAAAAGAAGCAACGTATGGAGAAGAATGAAACACGATCGGCTAAGTTGTTGGATCTAGA 119 Query 117 TGTTCTTGACTGTCCGGTTTGCTTCGAGCCGCTCACTATTCCTACCTTTCAGTGTGATGA 176 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TGTTCTTGACTGTCCGATTTGCTTCGAGCCGCTCACTATTCCTACCTTTCAGTGTGATGA 179 Query 177 TGGACATATAGTTTGCAATTTTTGCTTTGCCAAAGTGAGTA--A-CAAGTGCCCTGGTCC 233 ||||||| ||||||||| ||||||||||||||||||||||| | || |||||||||||| Sbjct 180 TGGACATCTAGTTTGCAGTTTTTGCTTTGCCAAAGTGAGTAGTAACAGGTGCCCTGGTCC 239 Query 234 TGGGTGTGATTTACCCATTGGTAATAAGCGATGCTTCGCAATGGAGAGGGTTCTCGAATC 293 |||||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||| Sbjct 240 TGGGTGTGATTTACCCATTGGTAACAAGCGATGCTTCTCAATGGAGAAGGTTCTTGAATC 299 Query 294 AGCCTTTGTTCCATGTCAAAATACTGAGTTTGGCTGCACAAAAAGTGTCTCTTATGAAAA 353 ||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||| || Sbjct 300 AGCCTTTGTTCCATGTCCAAATACTGAGTTTGGCTGCACAGAGAGTTTCTCTTATGGGAA 359 Query 354 AGTGTCAAGTCACGAAAAGGAATGCAACTACTCTCAATGCTCTTGCCCTAACCTCGAATG 413 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 360 AGTGTCAAGTCATGAAAAGGAATGCAACTACTCTCAATGCTCTTGCCCCAACCTCGAATG 419 Query 414 CAATTACACTGGCTCATATAACATCATCTACGGTCACTTTATGCGTCGCCATCTTTACAA 473 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 420 CAATTACACTGGCTCATACAACATCATCTACGGTCACTTTATGCGTAGCCATCTTTACAA 479 Query 474 TAGTACGATC-GTTTCCTCCAAATGGGGATATTCCACTGTTGATGTTCTAATAAACATCA 532 ||||||||| ||| |||||| ||||||||||||| |||||||||| | |||||||||| Sbjct 480 TAGTACGATATGTT-CCTCCATATGGGGATATTCCTCTGTTGATGTCCGGATAAACATCA 538 Query 533 AAGAAAAGGTTTCAGTTCTCTGGGAATCTCGTCAGAAACTTTTGTTTGTAGTTCAGTGTT 592 | |||||||||| ||||||||||||||||| ||||||||| |||||||| || ||||||| Sbjct 539 ATGAAAAGGTTTTAGTTCTCTGGGAATCTCTTCAGAAACTATTGTTTGTGGTCCAGTGTT 598 Query 593 TCAAGGAGCGACATGGTGTTTATGTTACTGTTAGACGCATCGCACCACCTGCTTCAGAAT 652 ||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 599 TCAGGGAGCGACATGGTGTTTATGTTACTGTTAGACGCATTGCACCATCTGCTTCAGAAT 658 Query 653 TCAAGAAGTTCTCGTATCGTCTTTCGTATAGTATCGACGGACATAATGTTACTTACGAAT 712 | ||||||||||||||| |||||||||||||||| || ||||| |||||||||||||||| Sbjct 659 TAAAGAAGTTCTCGTATTGTCTTTCGTATAGTATAGATGGACACAATGTTACTTACGAAT 718 Query 713 CACCAGAAGTAAAGAGGCTTCTTGAAGTGAATTCTCAAATCCCTGATGACAGTTTCATGT 772 |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 719 CACCAGAAGTGAAGAGGCTTCTTGAAGTAAATTCTCAAATCCCTGATGAGAGTTTCATGT 778 Query 773 TTGTCCCTAACTGTTTACTGCATGGTGAAATGTTGGAGTTGAAGCTTGGCATCAAGAAGT 832 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 779 TTGTCCCTAACTGTTTATTGCGTGGTGAAATGTTGGAGTTGAAGCTTGGCATCAAGAAGT 838 Query 833 T 833 | Sbjct 839 T 839 > Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1 Length=1896 Score = 183 bits (99), Expect = 2e-45 Identities = 124/136 (91%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 909 AAAGCCTGCTAATGAGGTTCAGCAAGTTACCATTGCTCAGGAAACTGTTATGGAGGATCC 968 ||||||||||||||||||||| |||| |||||| |||||||||||||||| | ||||||| Sbjct 230 AAAGCCTGCTAATGAGGTTCAACAAGCTACCATAGCTCAGGAAACTGTTAAGCAGGATCC 289 Query 969 TCCAACGTCTCTGTTTAAGAATTCAGTACCAATTCGAGAGGATCAAATTCAGAACGCTAT 1028 |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 290 TCCAACATCTGTGTTTAAGAATTCAGAACCAATTCGAGAGGATCAAATTCAGAACGCTAT 349 Query 1029 CACAAATTCCATTCGC 1044 || || ||| ||||| Sbjct 350 CA-AATTTCT-TTCGC 363 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38961621174 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5