BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62810.1
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1 2848 0.0
> Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1
Length=1896
Score = 2848 bits (1542), Expect = 0.0
Identities = 1762/1865 (94%), Gaps = 27/1865 (1%)
Strand=Plus/Plus
Query 70 ACCTCGATTTGAGCAAATCCTGATTTACTCTCATCCTCATCATCTCTCATCATCGAGATT 129
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 43 ACCTCGATTTGAGCAAAACCTGATTTACTCTCATCCTCATCGTCTCTCATCTTCGAGATT 102
Query 130 CATAGTCTCTTTTGCCGCTTGGATTCTTCCAAGGTTAGTGAGCTGCTATGGCAACTCATC 189
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 103 TATAGTCTCTTTCGCCGCTTGGATTCTTCCAAGGTTGGTGAGCTGCTATGGCAACTCATC 162
Query 190 AGCAAACGCAACCTCCTTCCGATTTTCCCGCTCTTGCCGATGAAAATTCCCAGATTCCAG 249
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 163 AGCAAACTCAACCTCCTTCCGATTTTCCCGCTCCTGCCGATGACAATTCCCAGATTCCAG 222
Query 250 AGGCTACTAAGCCTGCTAATGAGGTTCAGCAAGCTACC--A--T-A-G---C---T---C 294
||||||| |||||||||||||||||||| ||||||||| | | | | | | |
Sbjct 223 AGGCTACAAAGCCTGCTAATGAGGTTCAACAAGCTACCATAGCTCAGGAAACTGTTAAGC 282
Query 295 AGGATCCTCCAACATCTGTGTTTAAGAATTCTGAACCAATACGGGAGGATCAAATTCAGA 354
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 283 AGGATCCTCCAACATCTGTGTTTAAGAATTCAGAACCAATTCGAGAGGATCAAATTCAGA 342
Query 355 ACGCTATCAAATTCCTTTCGCACCCGAGGGTTAGAGGCTCTCCTGTTATACATAGAAGAT 414
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 ACGCTATCAAATTTCTTTCGCACCCGAGGGTTAGAGGCTCTCCTGTTATACATAGAAGAT 402
Query 415 CTTTTCTTGAGAGGAAAGGTCTCACTAAAGAAGAGATTGACGAAGCTTTCCGCCGTGTTC 474
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 403 CTTTTCTTGAGAGGAAAGGACTCACTAAAGAAGAGATTGACGAAGCATTCCGCCGTGTTC 462
Query 475 CTGATCCACCACCAAGTTCGCAGACAACTGTTACAACAAGTCAAGATGGACAGCAAGCAG 534
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 463 CTGATCCACCGCCAAGTTCGCAGACAACTGTT---ACAAGTCAAGATGGACAGCAAGCAG 519
Query 535 TGTCAACTGTTCAGCCACAAGCTATGCAGCCTGTAGTAGCTGCTCCTGCTCCACTCATTG 594
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 520 TGTCAACTGTTCCGCCACAAGCTATGCAGCCTGTAGTAGCTGCTCCTGCTCCACTCGTTG 579
Query 595 TGACTCCACAGGCAGCTTTTCTCTCTCGGTTTCGCTGGTACCATGCTATTCTTGCTGTTG 654
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 580 TGACTCCGCAGGCAGCTTTTCTCTCTCGGTTTCGCTGGTACCATGCTATTCTTGCTGTAG 639
Query 655 GAGTACTTGCAGCCTCTGGTGCCGGTACAGCTGTTTTTATTAAGAGATCTCTCATACCCA 714
||||||| ||||| ||||||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 640 GAGTACTAGCAGCTTCTGGTGCCGGAACAGCTGTTTTTATAAAGAAATCTCTCATACCCA 699
Query 715 GATTTAAATCCTGGGTCCAAAGAATTATGTTGGAAGAAGAAACTGACCCTCTGAAGAAAG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GATTTAAATCCTGGGTCCAAAGAATTATGTTGGAAGAAGAAACTGACCCTCTGAAGAAAG 759
Query 775 CTGATGCTAAACCTAGCTTAGCTGAAGAAGCTGTAGCTGCAGCCAAAGCTGCTTCTGCGG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CTGATGCTAAACCTAGCTTAGCTGAAGAAGCTGTAGCTGCAGCCAAAGCTGCTTCTGCGG 819
Query 835 CTGCTTCTGATGTAGCCAGGGTTAGTCAGGAAATGATGATAACAAAGAATGAAGAGAGGA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 CTGCTTCTGATGTAGCCAGGGTTAGTCAGGAAATGATGATAACAAAGAATGAAGAGAGGA 879
Query 895 AATATTTTGAGGACTTAACGCACCTGTTAGGTGTCCAAGTACAAGAAATGAAGTCCTTGA 954
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 880 AATATTTTGAGGACTTAACGCGCCTGTTAGGTGTCCAAGTACAAGAAATGAAGTCCTTGA 939
Query 955 GCAATAATATCCGTAAGCTTGAAGGGCAATCCAACAACATCCCAAAGATTTATTCAGCTG 1014
||||||||||||||| ||| ||||| ||| |||||||||| |||||||||||||| ||||
Sbjct 940 GCAATAATATCCGTAGGCTCGAAGGACAACCCAACAACATTCCAAAGATTTATTCCGCTG 999
Query 1015 ATCAAGAGGTTTATAATGGTTCGGTCACTACAGCAAGGAAACCCTATACAAATGGCAGCA 1074
|||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||
Sbjct 1000 ATCAAGAGGTTTATAATGGTTCAGTCACTGCAGCAAGGAAACTCTATACAAATGGCAGCA 1059
Query 1075 ATGTTGATTATGACACACGTTCAGCACGATCTGCATCTCCTCCTGCGGCACCAGCTGATT 1134
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1060 ACGTTGATTATGACACACGTTCAGCACGATCTGCATCTCCTCCTGCGCCACCAGCTGATT 1119
Query 1135 CGTCGGCGCCCCCTCATCCAAAGTCATACATGGATATAATGTCTATGATCCAGAGAGGAG 1194
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CCTCTGTGCCCCCTCATCCAAAGTCATACATGGATATAATGTCTATGATCCAGAGAGGAG 1179
Query 1195 AGAAGCCTTCAAACATTCGGGAGATTAACGACATGCCGCCCAATCCAAACCAACCACTAT 1254
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1180 AGAAGCCTTCAAACATTCGGGAGATTAACGACATGCCGCCTAATCCGAACCAACCACTAT 1239
Query 1255 CAGATCCACGCATTGCTCCCAAATCAAAGCCATGGGACTATGGTCAAGCGCCGCAAGACG 1314
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1240 CAGATCCACGCATCGCTCCCAAATCTAAGCCATGGGACTATGGTCAAGCGCCACAAGACG 1299
Query 1315 AGAGTTCCAATGGTCAATGGTGGCAACAGAAAAACCCTAGATCCACGGATTTCGGATACG 1374
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1300 AGAGTTCTAATGGTCATTGGTGGCAACAGAAAAACCCTAGATCCACGGATTTCGGCTATG 1359
Query 1375 AGACAACAACAGCGGCGCGTTTCACTGCTAACCAAAATGAAACAAGTACAATGGAACCAG 1434
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1360 AGACAACAACAGCGGCGCGTTTCACTGGTAACCAAAATGAAACAAGTACAGTGGAACCAG 1419
Query 1435 CAGCTTTCCAGAGGCAACGATCATGGGTACCTCCACAACCACCTCCAGTTGCCATGGCAG 1494
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CAGCTTTCCAGAGGCAACGGTCATGGGTACCTCCACAACCACCTCCAGTTGCCATGGCAG 1479
Query 1495 AAGCAGTC-GAGGCCATTCGCCGTCCTAAGCCACAAGCTAAGATAGACCAAGAAGCAGCT 1553
|||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1480 AAGCAG-CAGAGGCCATTCGCCGTCCTAAGCCACGAGCTAAGATAGACCAAGAAGCAGCT 1538
Query 1554 GCTAGTGATGGCCAGTCAGGTGTGAGCGATGAGTTACAGAAGATCACTAAATTCTCCGAA 1613
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1539 GCTAGTGATGATCAGTCAGGTGTGAGCGATGAGTTACAGAAGATCACTAAGTTCTCTGAA 1598
Query 1614 TCTGGTGGTGATGGGTCAGGAGGAATTAAGATCGCAGAGATACAAGAAGAAACAGAACAG 1673
|||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1599 TCTGGTGGTGATGGATCAGGAGGAATTCAGATCACAGAGATAGAAGAAGAAACAGAACAG 1658
Query 1674 CAACATATCAGCCAGGAAGGGAACTAAAAACAATAATAATTAGGGGTTATTGATACTTTA 1733
|||||||||||||| ||||||| ||| |||||||||| | ||||||| |||||||||||
Sbjct 1659 CAACATATCAGCCAAGAAGGGA-CTACAAACAATAAT--T-AGGGGTTCTTGATACTTTA 1714
Query 1734 TGAGGTTTGCCTGTAAGAAAACATGCATTTAGGTCTTGGGATTTATCACCACCTACCTTC 1793
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1715 TGAGGTTTGCTTGTAAGAAAACATGCATTTAGGTCTTGGGATATATCACCACCTACCTTC 1774
Query 1794 ATTTAATAAAATATGTCTTGCTACACAAGTAAACTCAGTCATTTGATGATTACTTGTCTT 1853
||| ||||| |||| ||||||| |||||||||| ||||||||||||| | ||||||||
Sbjct 1775 ATTAAATAATATATATCTTGCTGCACAAGTAAATTCAGTCATTTGAT--TG-CTTGTCTT 1831
Query 1854 ATTTTAATATTTTGAAACTTGTATCACACATTACCATTCTAAGCTATAAGAGAGACTGTA 1913
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 ATTTTAATATATCGAAACTTGTATCACACATTACCATTCTAAGCTATAAGAGAGACTGTA 1891
Query 1914 CATAG 1918
|||||
Sbjct 1892 CATAG 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72066743540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5