BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62820.1
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951069 jgi|Araly1|951069|scaffold_802956.1 1500 0.0
Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1 106 4e-22
> Ahg951069 jgi|Araly1|951069|scaffold_802956.1
Length=939
Score = 1500 bits (812), Expect = 0.0
Identities = 889/927 (96%), Gaps = 1/927 (0%)
Strand=Plus/Plus
Query 99 CGCCGGAGAAAATCGAATCAAATAGATGAAGATGAAGCGGACTGCGTCATCGAACTCGGA 158
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 CGCCGGAG-AAATCGAATCAAATAGATGAAGATGAAGCGGACTGCGTCATCGAACTCAGA 59
Query 159 AGCACAGAGTTACAACGAATCACCTCACTCTCCTCTTCGATTTCATTCTCCGTTATCAGA 218
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 AGCATATAGTTACAACGAATCACCACACTCTCCTCTTCGATTTCATTCTCCGTTATCAGA 119
Query 219 TGCCGGAGATTTACCTGAAAGCCGTTACGTTTCTCCTGAGGGATCTCCGTTCAAAATCGA 278
||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct 120 TGCCGGAGATTTACCGGAGAGTCGTTACGTTTCGCCTGAGGGATCTCCGTTCAAAATCGA 179
Query 279 GAATCCGAAGTCGATCGTAGCTGGTAATAAGCTCACACAGTTTTCGCCTCTTCCCTCGCC 338
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 180 GAATCCTAAGTCGATCGTAGCTGGTAATAAGCTCACGCAGTTTTCGCCTCTTCCTTCCCC 239
Query 339 GATTCCGCCTCCTCCTCCTCAGTTTCCGCCGCCGCGGCGTCAGAGGAATGCGAGAGTTCC 398
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 240 GATTCCGCCTCCTCCTCCCCAGTTTCCGCCGCCGCGACGTCAGAGGAACGCGAGAGTTCC 299
Query 399 GATGAATTCTTCTTCGGATAAGTCTCCGTCGTCTATGGTGGTGCACAATAGCTGGGTGAG 458
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATGAATTCGTCTTCGGATAAGTCTCCGTCGTCTATGGTGGTGCACAATAGCTGGGTGAG 359
Query 459 AGAAGACGGTGGACAAACTACGACGAGAAAAGCTGGAGCTCCGATAAACGGAGAAGAATC 518
|||||| ||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 360 AGAAGATGGTCAACAAAATACGACGAGGAAAGCTGGAGCTCCGATGAACGGAGAAGAATC 419
Query 519 GACGAGGACGACGGTGAACAGAGCGAGAGGAGACGATTTAGTAAGTTTGACGGCGCTAGG 578
| ||| ||||||||||| |||||||||| ||||||||||||| ||| |||| ||||||||
Sbjct 420 GGCGACGACGACGGTGAGCAGAGCGAGAAGAGACGATTTAGTGAGTGTGACAGCGCTAGG 479
Query 579 GTTTAGAATTACCGAAGTAATTTTGTGTGTGATTTCGTTTTCAATCATGGCGGCTGATAA 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTTAGAATTACCGAAGTAATTTTGTGTGTGATTTCGTTTTCAATCATGGCGGCTGATAA 539
Query 639 AACTCAAGGATGGAGTGGCGATTCTTATGATCGCTACAAAGAGTACAGGTATTGTTTGGC 698
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 AACTCAAGGATGGAGCGGCGATTCCTATGATCGCTACAAAGAGTACAGGTATTGTTTGGC 599
Query 699 TGTGAACGTTATAGCATTCGTTTACTCTGCATTTGAAGCTTGTGACGCTGCTTGCTACAT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTGAACGTTATAGCATTCGTTTACTCTGCATTTGAAGCTTGTGACGCTGCTTGCTACAT 659
Query 759 CGCAAAAGAGAGTTATATGATCAACTGTGGATTTCATGACTTATTCGTTTTCTCCATGGA 818
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGCCAAAGAGAGTTATATGATGAACTGTGGATTTCATGACTTATTCGTTTTCTCCATGGA 719
Query 819 TCAACTTCTTGCATATCTTCTAATGTCGGCTTCTTCATGTGCTGCGACTCGAGTTGATGA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCAACTTCTTGCATATCTTCTAATGTCGGCTTCTTCATGTGCTGCGACTCGAGTTGATGA 779
Query 879 TTGGGTATCTAATTGGGGCAAAGATGAGTTTACTCAAATGGCAACCGCTTCCATCGCGGT 938
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGGGTATCTAATTGGGGTAAAGATGAGTTTACTCAAATGGCAACCGCTTCCATCGCGGT 839
Query 939 TTCCTTTTTAGCGTTTGGAGCGTTCGCGGTCAGCGCGTTGATTTCTTCTTACAGGCTCTT 998
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 840 TTCCTTTTTAGCGTTTGGAGCGTTTGCGGTCAGCGCTTTGATTTCTTCTTACAGACTCTT 899
Query 999 CACTCATGCTTCCTCCTAGTTGTGTTG 1025
|||||||||||||||||||||||||||
Sbjct 900 CACTCATGCTTCCTCCTAGTTGTGTTG 926
> Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1
Length=1896
Score = 106 bits (57), Expect = 4e-22
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 1056 CTATGTACAGTCTCTCTTATAGCTTAGAATGGTAATGTGTGATACAAGTTTCAAAATATT 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1896 CTATGTACAGTCTCTCTTATAGCTTAGAATGGTAATGTGTGATACAAGTTTCGATATATT 1837
Query 1116 AAA 1118
|||
Sbjct 1836 AAA 1834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41668348281
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5