BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62830.1 Length=615 Score E Sequences producing significant alignments: (Bits) Value Ahg496466 jgi|Araly1|496466|fgenesh2_kg.8__2282__AT5G62830.1 754 0.0 > Ahg496466 jgi|Araly1|496466|fgenesh2_kg.8__2282__AT5G62830.1 Length=618 Score = 754 bits (408), Expect = 0.0 Identities = 484/520 (93%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 2 TGGAAATGTATGAGTTTACCTCTAATTCATGGAGGAATCTTGATGTGATCATTCCCGATC 61 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 14 TGGAAATTTATGAGTTTACCTCTAATTCATGGAGGAATCTTGATGCGATCATTCCCGATC 73 Query 62 AGGCCTACTTAAAATGTGATGGTCATGCGTGTGCGTCTTTAAGTGGAAATACTTATTGGG 121 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 74 AGGCCTACTTAAAAAGTGATGGCCATGCGTGTGCGTCTTTAAGTGGAAATACTTATTGGG 133 Query 122 TGTCATGGATTGAAAAAGGAGACAACGACGACTACTCACTACTCAGTTTTGATTTTTCAA 181 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 134 TGTCGTGGATTAAAAAAGGAGACAACGACGACTACTCACTACTCAGTTTTGATTTTTCAA 193 Query 182 CAGAAAGGTTTCAACGTTTGTGTGCTCACTTTCATCATCAACCATGCCGTGTTGATACTA 241 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 194 CAGAAAGGTTTCAACGTTTGTGTGCTCCCTTTCATCATCAACCATGCCGTGTTGATACTA 253 Query 242 TTGCTCTCTCGGTTGTTAGAGAAGAACATCTTTCCTTGTTTTATCAGAGTAGGCAGACAC 301 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 254 TGGCTCTCTCGGTTGTTAGAGAAGAACATCTTTCCTTGTTTTATCAGAGTAGACAGACAC 313 Query 302 TAAAGGTGGAAATATGGGTGACCGTTGAGATTGAGACCACATTTGTCTCGTGGAGCAAGT 361 |||| |||||||||||| |||||| ||||||| | || |||||||| ||||||||||||| Sbjct 314 TAAAAGTGGAAATATGGATGACCGATGAGATTCATACAACATTTGTGTCGTGGAGCAAGT 373 Query 362 TCTTAACATTAGATTTAGTTTCTCCTTGTTTATCGAGAT-CAATGAGCTTCTATATTCTT 420 ||||||||||||||||||||||||||| ||| |||| || | ||||||||||||||| || Sbjct 374 TCTTAACATTAGATTTAGTTTCTCCTTCTTTTTCGA-ATTCCATGAGCTTCTATATTGTT 432 Query 421 GATGAGGAGAAGAAAATTGTTGTGTGTTGTGATGAAAG-CGAAAATTTCTACTACTCCAA 479 || |||||||||||| ||||||||||||||| || ||| || | ||| | | ||||||| Sbjct 433 GACGAGGAGAAGAAAGTTGTTGTGTGTTGTG-TGGAAGACGGAT-TTT-T-CGACTCCAA 488 Query 480 ATTGGTATGGATTGCTAGAGAAGGACAAGAATATAGACCA 519 |||||||||||||| |||||||||| ||||||||| |||| Sbjct 489 ATTGGTATGGATTGTTAGAGAAGGAGAAGAATATATACCA 528 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22492521030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5