BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62830.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496466 jgi|Araly1|496466|fgenesh2_kg.8__2282__AT5G62830.1 754 0.0
> Ahg496466 jgi|Araly1|496466|fgenesh2_kg.8__2282__AT5G62830.1
Length=618
Score = 754 bits (408), Expect = 0.0
Identities = 484/520 (93%), Gaps = 7/520 (1%)
Strand=Plus/Plus
Query 2 TGGAAATGTATGAGTTTACCTCTAATTCATGGAGGAATCTTGATGTGATCATTCCCGATC 61
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 14 TGGAAATTTATGAGTTTACCTCTAATTCATGGAGGAATCTTGATGCGATCATTCCCGATC 73
Query 62 AGGCCTACTTAAAATGTGATGGTCATGCGTGTGCGTCTTTAAGTGGAAATACTTATTGGG 121
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 74 AGGCCTACTTAAAAAGTGATGGCCATGCGTGTGCGTCTTTAAGTGGAAATACTTATTGGG 133
Query 122 TGTCATGGATTGAAAAAGGAGACAACGACGACTACTCACTACTCAGTTTTGATTTTTCAA 181
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TGTCGTGGATTAAAAAAGGAGACAACGACGACTACTCACTACTCAGTTTTGATTTTTCAA 193
Query 182 CAGAAAGGTTTCAACGTTTGTGTGCTCACTTTCATCATCAACCATGCCGTGTTGATACTA 241
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 194 CAGAAAGGTTTCAACGTTTGTGTGCTCCCTTTCATCATCAACCATGCCGTGTTGATACTA 253
Query 242 TTGCTCTCTCGGTTGTTAGAGAAGAACATCTTTCCTTGTTTTATCAGAGTAGGCAGACAC 301
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 254 TGGCTCTCTCGGTTGTTAGAGAAGAACATCTTTCCTTGTTTTATCAGAGTAGACAGACAC 313
Query 302 TAAAGGTGGAAATATGGGTGACCGTTGAGATTGAGACCACATTTGTCTCGTGGAGCAAGT 361
|||| |||||||||||| |||||| ||||||| | || |||||||| |||||||||||||
Sbjct 314 TAAAAGTGGAAATATGGATGACCGATGAGATTCATACAACATTTGTGTCGTGGAGCAAGT 373
Query 362 TCTTAACATTAGATTTAGTTTCTCCTTGTTTATCGAGAT-CAATGAGCTTCTATATTCTT 420
||||||||||||||||||||||||||| ||| |||| || | ||||||||||||||| ||
Sbjct 374 TCTTAACATTAGATTTAGTTTCTCCTTCTTTTTCGA-ATTCCATGAGCTTCTATATTGTT 432
Query 421 GATGAGGAGAAGAAAATTGTTGTGTGTTGTGATGAAAG-CGAAAATTTCTACTACTCCAA 479
|| |||||||||||| ||||||||||||||| || ||| || | ||| | | |||||||
Sbjct 433 GACGAGGAGAAGAAAGTTGTTGTGTGTTGTG-TGGAAGACGGAT-TTT-T-CGACTCCAA 488
Query 480 ATTGGTATGGATTGCTAGAGAAGGACAAGAATATAGACCA 519
|||||||||||||| |||||||||| ||||||||| ||||
Sbjct 489 ATTGGTATGGATTGTTAGAGAAGGAGAAGAATATATACCA 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5