BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62850.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496468 jgi|Araly1|496468|fgenesh2_kg.8__2284__AT5G62850.1 1426 0.0
> Ahg496468 jgi|Araly1|496468|fgenesh2_kg.8__2284__AT5G62850.1
Length=959
Score = 1426 bits (772), Expect = 0.0
Identities = 837/869 (96%), Gaps = 1/869 (0%)
Strand=Plus/Plus
Query 1 ATGACGGACCCCCACACCGCCCGGACGATCGTCGGAATCGTTGGAAACGTGATTTCTTTC 60
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGACGGACCCCCACACTGCCCGGACGATCGTCGGAATCATCGGAAACGTGATTTCTTTC 60
Query 61 GGCTTGTTCTGCGCTCCAATACCAACGATGGTGAAGATATGGAAGATGAAATCGGTCTCC 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 61 GGCTTGTTCTGCGCTCCAATACCAACGATTATGAAGATATGGAAGATGAAATCGGTGTCG 120
Query 121 GAGTTTAAGCCAGATCCATACGTAGCTACGGTTTTAAACTGCATGATGTGGACATTTTAC 180
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 GAGTTTAAGCCAGATCCATACGTCGCTACAGTTTTAAACTGCATGATGTGGACATTTTAC 180
Query 181 GGACTTCCTTTCGTCCAGCCCGACAGTCTCCTCGTCATCACCATTAATGGAACTGGTCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGACTTCCTTTCGTCCAGCCCGACAGTCTCCTCGTCATCACCATTAATGGAACTGGTCTT 240
Query 241 TTCATGGAACTCGTTTACGTCACCATCTTCTTTGTCTTCGCTACCTCCCCTGTCCGCAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCATGGAACTCGTTTACGTCACCATCTTCTTTGTCTTCGCTACCTCCCCTGTCCGCAGA 300
Query 301 AAGATCACAATAGCTATGGTTATCGAGGTAATATTCATGGCGGTGGTGATCTTCTGCACA 360
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 301 AAGATCACAATAGCTATGGTAATCGAGGTGATATTCATGGCGGTGGTGATCTTCTGCACA 360
Query 361 ATGTATTTTTTGCATACAACAAAGCAGAGATCAATGCTTATTGGGATCTTGTGCATTGTT 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 ATGTATTTTTTGCATACAACAAAGCAGAGATCTATGCTTATTGGGATCTTGTGCATTGTT 420
Query 421 TTCAACGTCATCATGTATGCTGCTCCTCTCACCGTCATGAAACTTGTGATAAAGACAAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAACGTCATCATGTATGCTGCTCCTCTCACCGTCATGAAACTTGTGATAAAGACAAAG 480
Query 481 AGCGTGAAATACATGCCGTTCTTCCTATCATTAGCCAACTTCATGAACGGTGTCGTTTGG 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AGCGTGAAATACATGCCGTTCTTCCTGTCATTAGCCAACTTCATGAACGGTGTCGTTTGG 540
Query 541 GTCATTTATGCATGTCTTAAATTTGACCCTTATATTTTGATTCCAAATGGTCTTGGATCG 600
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 541 GTCATTTATGCATGTCTTAAATTCGACCCCTATATTTTGATTCCAAATGGTCTTGGATCG 600
Query 601 CTATCAGGAATAATCCAGCTTATAATATACATAACTTACTATAAAACAACTAACTGGAAC 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 601 CTATCAGGAATAATCCAGCTTATATTATACATAACTTACTATAAAACAACTAATTGGAAC 660
Query 661 GATGACGATGAAGATAAAGAAAAGCGCTATTCGAATGCTGGAATCGAACTTGGCCAGGCT 720
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATGAAGATGAAGATAACGAAAAGCGCTATTCGAATGCTGGAATCGAACTTGGCCAGGCT 720
Query 721 TGATAGTTTCAGCTAT-TTCATCGTCTACGGTGCTTCATCGATAGGTTAAGATAGAATCA 779
||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 TGATAATTGCAGCTAGCTTCATCGTCGACGGTGCTTCATCGATAGGTTAAGATAGAATCA 780
Query 780 GAAGTGAGGTGAAGTTCTTATTACTATTATTTTGTGTAAGCCTATGTAGaaaaaaaaTGA 839
||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||||
Sbjct 781 GAAGTGAGGTGAAGTTCTTATTACTATTATTATGTGGAAGCTTATGAAGAAAAAAAATGA 840
Query 840 ACAAGTGGAACCCTTAAGTTATGAAGTTT 868
| ||||||||||| |||||| |||||||
Sbjct 841 AAAAGTGGAACCCCAAAGTTACGAAGTTT 869
Score = 148 bits (80), Expect = 6e-35
Identities = 91/96 (95%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 894 AGttttttttt-ttGGAAATGATTGTAACTTTCGCAAGTTGAATCTATGTACGTTGTTAC 952
||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 865 AGTTTTTTTTTGTTGG-AATGATTATAACTTTCGCAAGTTGAATCTATGTAATTTGTTAC 923
Query 953 AATTTTAGTTTTAATCGAAGTTTATTAGATTACTTT 988
||||||||||||||||||||||||||||||||||||
Sbjct 924 AATTTTAGTTTTAATCGAAGTTTATTAGATTACTTT 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5