BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62865.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496469 jgi|Araly1|496469|fgenesh2_kg.8__2285__AT5G62860.1 721 0.0
> Ahg496469 jgi|Araly1|496469|fgenesh2_kg.8__2285__AT5G62860.1
Length=1083
Score = 721 bits (390), Expect = 0.0
Identities = 462/494 (94%), Gaps = 15/494 (3%)
Strand=Plus/Plus
Query 11 CGCAGTCGGACCCAACCCGAGATCCTGATACCCGGTACGATCAACGTTGCTGTTGTTTCC 70
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 605 CGCAGTCGGACCCAACCCGAGATCCGGATACCCGGTACGATCAACGTTGCTGCTGTTTCC 664
Query 71 CCAGCTTCCGCCGATCAAGAAGCTCCACCGCCGTTGGTTACTCCTCCTGGGGACGAATTC 130
||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 665 CCAGCTT---CCGATCAAGAAGCTCCACCGCCGTTGG--A-------TGGGGACGAATTC 712
Query 131 GAACCGTCGATGACAGTAATCACAGCGGCGACCACGGCGACGAGCCACGTTGGTGGATCC 190
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 713 GAACCGTCGATGACAGTAATCACAGCGGCGACCACGGCGACGAGCCACGGTGGTGGATCC 772
Query 191 GAGCATCCTTGAAGATCCGAGAGTGGTCAGAAATCGTTGCTGGTCCACGGTGGAAGACTT 250
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 773 GAGCATCCTTGAAGATCCGAGAGTGGTCAGAAATCGTAGCTGGTCCACGGTGGAAGACTT 832
Query 251 TCATTCGTCGATTCAATCGCGATCCACGACGCGGCCGCGATTGGGACGCAAGCGAGAAGT 310
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 833 TCATACGGCGATTCAATCGCGATCCTCGACGCGGCCGCGATTGGGACGCAAGCGAGAAGT 892
Query 311 TTCAATACGATCCTTTGAGTTACTCTTTGAACTTCGATGACGACGACGAGGAGGATGAAT 370
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 893 TTCAATACGATCCTTTGAGTTACTCTTTGAACTTCGATGACGATGACGAGGA---TGAAT 949
Query 371 ACGTCGGACTAGGTGGATTACGAAGCTTCTCGACCCGATTCGCTTCTGTCCCGGTTTACT 430
|||||||| |||||||||| ||||||||||| || |||||||||||||| ||||| ||||
Sbjct 950 ACGTCGGAGTAGGTGGATTGCGAAGCTTCTCCACTCGATTCGCTTCTGTTCCGGTATACT 1009
Query 431 CAGGTAAAGCTCCGGCGATTTCGCCGACGTCGTTGTCTGCGTTGACGCCGCGTAATGAGA 490
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1010 CAGGTAAAGCTCCGGCGATTTCGCCGACATCTTTGTCTGCGTTGACGCCGCGTAATGAGA 1069
Query 491 TCATTGAAAGTTAG 504
| ||||||||||||
Sbjct 1070 TAATTGAAAGTTAG 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5