BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62880.1
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496470 jgi|Araly1|496470|fgenesh2_kg.8__2286__AT5G62880.1 1391 0.0
Ahg485165 jgi|Araly1|485165|fgenesh2_kg.5__1157__AT3G48040.1 708 0.0
> Ahg496470 jgi|Araly1|496470|fgenesh2_kg.8__2286__AT5G62880.1
Length=933
Score = 1391 bits (753), Expect = 0.0
Identities = 860/907 (95%), Gaps = 26/907 (3%)
Strand=Plus/Plus
Query 90 TTTTGAGATCAAAATGGCTTCAAGTGCTTCAAAGTTCATCAAGTGTGTGACTGTTGGTGA 149
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 41 TTTTGAGATCAAAATGGCATCAAGTGCTTCAAAGTTCATCAAATGTGTGACTGTTGGTGA 100
Query 150 TGGTGCTGTTGGTAAAACCTGTATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGA 209
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 TGGTGCCGTTGGTAAAACCTGTATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGA 160
Query 210 CTACATACCAACAGTTTTTGACAACTTTAGTGCAAATGTTGTTGTTGAAGGCACCACTGT 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 CTACATACCAACAGTTTTTGACAACTTTAGTGCAAATGTTGTTGTTGAAGGCACCACTGT 220
Query 270 CAATTTGGGGCTTTGGGACACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAG 329
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CAATTTAGGGCTTTGGGACACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAG 280
Query 330 TTACAGGGGAGCAGATGTTTTCGTCTTGTCTTTCTCATTAGTCAGCCGAGCTAGCTACGA 389
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 TTACAGAGGAGCAGATGTTTTCGTCTTGTCTTTCTCATTAGTCAGCCGAGCTAGCTACGA 340
Query 390 GAATGTTTTTAAAAAGTGGATCCCTGAACTCCAACACTTTGCTCCAGGAGTTCCCCTTGT 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 341 GAATGTTTTTAAAAAGTGGATCCCTGAACTCCAACACTTTGCTCCAGGAGTTCCCCTAGT 400
Query 450 CCTTGTTGGTACCAAATTAGATCTTCGTGAAGATAAGCATTATTTGGCTGATCATCCTGG 509
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 401 CCTTGTCGGTACCAAATTAGATCTTCGTGAAGATAAGCATTATTTGGCTGACCATCCTGG 460
Query 510 ACTATCCCCTGTAACTACTGCACAGGGAGAGGAGTTGCGTAAGCTAATTGGTGCGACGTA 569
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 461 ACTATCCCCTGTAACTACTGCACAGGGAGAGGAATTGCGTAAGCTAATTGGCGCGACGTA 520
Query 570 TTACATTGAGTGTAGTTCAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCTGCGAT 629
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 521 TTACATTGAGTGTAGCTCAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCCGCAAT 580
Query 630 AAAGGAAGTGATCAAACCTCTGGTTAAACAAAAGGAGAAGACTAAGAAGAAGAAGAAGCA 689
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 581 AAAGGAAGTGATCAAACCGCTGGTTAAACAAAAGGAGAAGACGAAGAAGAAGAAGAAGCA 640
Query 690 AAAGTCGAATCACGGCTGTTTATCAAATGTTCTGTGTGGGAGGATAGTGACTCGGCATTG 749
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 641 AAAGTCGAATCACGGCTGTTTGTCAAATGTTCTGTGTGGGAGGATAGTGACTCGGCATTG 700
Query 750 ATGACGATGA---CCCAACTCAGTCTGATGATTTTAAACTCCACTTTTGAGATTGTGTGA 806
|||| ||||| ||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 701 ATGATGATGATGACCCAACTCAGTCTGATGATTTAAAACTCCACTTTTGAGATT-T-TG- 757
Query 807 TAAACGAGAGACTTTATATTATATAGATTGAATCATGTAAGAGATTATTAGCCTCTAATC 866
| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 T----G------TT-ATATTATATAGATTGAATCATGTAAGAGATTATTAGCCTCTAATC 806
Query 867 AATCAATAGTTACCTTGAAGAGAGAAAGAG-G-G-G-GAGG----TAGAGAGCTTATTAT 918
|||||||||||||||||||||||||||||| | | | |||| |||||||||||||||
Sbjct 807 AATCAATAGTTACCTTGAAGAGAGAAAGAGAGTGAGAGAGGGAGGTAGAGAGCTTATTAT 866
Query 919 TAATTCAATTGTGTTTATTTGTTTCAAACCTGTTATTGCAATATATT-AGCCATTTTGAT 977
|||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 867 TAATTCAATTATGTTTATTTGTTTCAAACCTGTTATTGCAATATATTTAGCTATTTTGAT 926
Query 978 ACAACAG 984
||||||
Sbjct 927 GCAACAG 933
> Ahg485165 jgi|Araly1|485165|fgenesh2_kg.5__1157__AT3G48040.1
Length=849
Score = 708 bits (383), Expect = 0.0
Identities = 527/595 (89%), Gaps = 16/595 (3%)
Strand=Plus/Plus
Query 102 AATGGCTTC-AAGTGCTTCAAAGTTCATCAAGTGTGTGACTGTTGGTGATGGTGCTGTTG 160
||||||| | || ||||||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 57 AATGGCTACGAA-TGCTTCAAAATTCATCAAATGTGTGACTGTTGGAGATGGTGCCGTTG 115
Query 161 GTAAAACCTGTATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGACTACATACCAA 220
| ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 116 GAAAAACTTGTATGCTCATCTGCTACACTAGCAACAAATTCCCTACTGACTACATACCAA 175
Query 221 CAGTTTTTGACAACTTTAGTGCAAATGTTGTTGTTGAAGGCACCACTGTCAATTTGGGGC 280
|||||||||||||||||||||| |||||||| |||||||||| |||||| || || ||||
Sbjct 176 CAGTTTTTGACAACTTTAGTGCTAATGTTGTCGTTGAAGGCATCACTGTGAACTTAGGGC 235
Query 281 TTTGGGACACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAGTTACAGGGGAG 340
||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 236 TTTGGGACACTGCCGGGCAAGAAGACTATAACAGACTAAGACCTTTAAGTTACAGAGGAG 295
Query 341 CAGATGTTTTCGTCTTGTCTTTCTCATT-AGTCAGCCGAGCTAGCTACGAGAATGTTTTT 399
|||||||||| || ||| |||||||||| | ||||||||||||||||||||||||| |||
Sbjct 296 CAGATGTTTTTGTGTTGGCTTTCTCATTGA-TCAGCCGAGCTAGCTACGAGAATGTGTTT 354
Query 400 AAAAAGTGGATCCCTGAACTCCAACACTTTGCTCCAGGAGTTCCCC-TTGTCCTTGTTGG 458
|||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||
Sbjct 355 AAAAAGTGGATCCCTGAACTCCAACACTTTGCACCAGGAGT-CCCCATTGTGCTTGTTGG 413
Query 459 TACCAAATTAGATCTTCGTGAAGATAAGCATTATTTGGCTGATCATCCTGGACTATC-CC 517
||||||| | ||||||||||||||||| ||||||||| |||||||||||||||| || ||
Sbjct 414 TACCAAAATGGATCTTCGTGAAGATAAACATTATTTGTCTGATCATCCTGGACTGTCTCC 473
Query 518 CTGTAACTAC-TGCACAGGGAGAGGAGTTGCGTAAGC-TAATTGGTGCGACGTATTACAT 575
| |||||||| | ||||||||||||| | || |||| || | || ||| ||||||||||
Sbjct 474 C-GTAACTACAT-CACAGGGAGAGGAACTCCGCAAGCATA-TCGGAGCGGCGTATTACAT 530
Query 576 TGAGTGTAGTTCAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCTGCGAT-AAAGG 634
||| ||||| |||||||||||||||||||||||||| || |||||| |||| || ||||
Sbjct 531 TGAATGTAGCTCAAAAACTCAACAGAATGTGAAAGCCGTATTTGATGCTGCTATCAAAGT 590
Query 635 AAGTGATCAAACCT-CTGGTTAAACAAAAGGAGAAGACTAAGAAGAAGAAGAAGC 688
| || || ||||| | ||| |||||||||||||||| ||||||||| ||||||
Sbjct 591 A-GTAATTAAACCAGC-GGTGAAACAAAAGGAGAAGAAGAAGAAGAAGCAGAAGC 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36598000320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5