BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62890.1
Length=2207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496474 jgi|Araly1|496474|fgenesh2_kg.8__2290__AT5G62890.1 3243 0.0
> Ahg496474 jgi|Araly1|496474|fgenesh2_kg.8__2290__AT5G62890.1
Length=2156
Score = 3243 bits (1756), Expect = 0.0
Identities = 2078/2219 (94%), Gaps = 79/2219 (4%)
Strand=Plus/Plus
Query 1 GTGTGGCTTTACCTTTTGTACCTAAACCTCTCACActctctctctctGGCTTGCTGTTTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTGTGGCTTTACCTTTTGTACCTAAACCTCTCACACTCTCTCTCTCTGGCTTGCTG--T- 57
Query 61 CTCTCATCGTCTCCTTTACTTCATTCGTCTTCTTCCTCTCTTTCCCACAAGCT-CCCATT 119
| | | ||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 58 -T-T-A----CTCCTTTACTTCATTCGTCTTCTTCCTCTCTTTCCCAGAAGCTGCCCATT 110
Query 120 GATGTGAGTT-TC-TTA--TCACTTTTCTTTTT-C-C-GATTTGTCAATTCCTTTTTTGC 172
|||||||||| || | || ||||||||||| | | ||||||| || | || |
Sbjct 111 GATGTGAGTTATCACCACCTCTCTTTTCTTTTTGCACTGATTTGT-GCTT-C--GCTTAC 166
Query 173 ACTGATTTGTGCTTCGCTTACACATTGCTAGTAGATTCCCCGATCTGGGTTTTTTCTTAT 232
|| | | ||| || | | || || ||||||||||||||||||| |||||||||
Sbjct 167 AC--A--T-TGC--AGC-T-CTTTTTTCTGGTAGATTCCCCGATCTGGGGCTTTTCTTAT 217
Query 233 TCGTGTTCATCATACTAAAGTTTGGTGCTTTTTTGT--G-TTTG-TG-T--AGATAGAGA 285
|||||||| ||||||||||||||| ||||||||||| | |||| | | ||| |||||
Sbjct 218 TCGTGTTCTTCATACTAAAGTTTGATGCTTTTTTGTGGGTTTTGCAGATAGAGAGAGAGA 277
Query 286 GAGAGATTTAAGGAAGGAATCATGGCAGGGGGTGGAGCTCCAGCACCCAAAGCAGACGAA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GAGAGATTTAAGGAAGGAATCATGGCAGGGGGTGGAGCTCCAGCACCCAAAGCAGACGAA 337
Query 346 CCACAACCACATCCTCCTAAAGATCAACTTCCCAACATTTCTTATTGCATCACCAGTCCT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 CCACAACCACATCCTCCTAAAGATCAACTTCCCAACATTTCTTATTGCATCACCAGTCCT 397
Query 406 CCTCCTTGGCCTGAAGCTATTCTTCTTGGATTCCAACATTACCTTGTGATGCTTGGGACA 465
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 398 CCTCCTTGGCCCGAAGCTATTCTTCTTGGATTTCAACATTACCTTGTGATGCTTGGGACA 457
Query 466 ACGGTGCTCATACCTACTGCTCTTGTTCCCCAGATGGGAGGTGGATATGAAGAGAAGGCA 525
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 ACAGTCCTCATACCTACTGCTCTTGTTCCCCAGATGGGAGGTGGATATGAAGAGAAGGCA 517
Query 526 AAGGTGATCCAGACTATTCTCTTTGTTGCTGGCATCAACACATTGCTCCAAACACTGTTC 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 518 AAGGTGATCCAGACTATTCTCTTTGTTGCTGGCATCAACACATTGCTCCAAACACTTTTC 577
Query 586 GGTACTAGATTGCCTGCTGTTGTTGGAGCTTCCTACACATTCGTGCCAACAACGATATCC 645
|| |||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct 578 GGGACTAGATTGCCTGCTGTTATTGGAGCATCCTACACATTCGTACCAACAACGATATCC 637
Query 646 ATAATCCTCTCTGGCAGATTCAGTGATACCTCGAACCCTATAGATCGCTTTGAGAGGATA 705
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 638 ATAATCCTCTCTGGCAGATTCAGTGATACCTCAAACCCTATAGATCGCTTTGAGAGGATA 697
Query 706 ATGCGGGCAACCCAAGGCGCCTTGATTGTTGCTTCTACCCTGCAGATGATTCTTGGTTTC 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ATGCGGGCAACCCAAGGCGCCTTGATTGTTGCTTCTACCCTGCAGATGATTCTTGGTTTC 757
Query 766 AGTGGTCTCTGGCGTAATGTTGTTAGGTTCTTAAGTCCTATTTCAGCTGTTCCACTGGTG 825
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AGTGGTCTCTGGCGAAATGTTGTTAGGTTCTTAAGTCCTATTTCAGCTGTTCCACTGGTG 817
Query 826 GGTCTCGTTGGTTTTGGGCTGTATGAGTTTGGTTTCCCGGGGGTTGCTAAATGCATAGAG 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GGTCTCGTTGGTTTTGGGCTGTATGAGTTTGGTTTCCCGGGGGTTGCTAAATGCATAGAG 877
Query 886 ATTGGACTGCCTGAGCTTCTTATTCTAGTATTCGTTTCACAGTACCTGCCTCATGTGATC 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 ATTGGACTGCCTGAGCTTCTTATTCTAGTATTCGTTTCACAGTACCTGCCTCATGTGATC 937
Query 946 AAATCAGGGAAAAATGTGTTTGACCGATTTGCTGTGATATTCGCGGTGGTGATTGTGTGG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 AAATCAGGGAAAAATGTGTTTGACCGATTTGCTGTGATATTCGCGGTGGTGATTGTGTGG 997
Query 1006 ATCTATGCTCATCTTCTTACAGTTGGTGGGGCCTACAATGGTGCTGCACCAACTACTCAA 1065
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 998 ATCTATGCTCATCTTCTTACAGTTGGTGGGGCCTACAATGGTGCTGCACCAACTACACAA 1057
Query 1066 ACAAGTTGCCGGACAGATCGTGCTGGAATCATAGGTGCTGCCCCATGGATAAGAGTTCCA 1125
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 ACAAGTTGTCGGACAGATCGTGCTGGAATCATAGGTGCTGCCCCATGGATAAGAGTTCCG 1117
Query 1126 TGGCCTTTCCAGTGGGGTGCCCCATCGTTTGATGCTGGAGAAGCTTTTGCAATGATGATG 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 TGGCCTTTCCAGTGGGGTGCCCCATCGTTTGATGCTGGAGAAGCTTTTGCAATGATGATG 1177
Query 1186 GCTTCTTTTGTTGCTCTAGTTGAGTCAACCGGTGCTTTTGTCGCGGTGTCAAGATACGCA 1245
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 1178 GCTTCTTTTGTTGCTCTAGTTGAGTCAACCGGTGCTTTTGTCGCTGTCTCGAGATACGCA 1237
Query 1246 AGTGCAACGATGTTGCCACCTTCTATTCTCAGCCGCGGTATTGGCTGGCAGGGAGTTGCG 1305
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1238 AGTGCAACGATGTTGCCACCTTCTATCCTCAGCCGGGGTATAGGCTGGCAGGGAGTTGCG 1297
Query 1306 ATTCTGATATCAGGATTGTTTGGTACTGGTGCTGGTTCCTCTGTCTCTGTAGAAAATGCC 1365
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1298 ATTCTGATATCAGGGTTGTTTGGTACTGGAGCTGGTTCCTCTGTCTCTGTAGAAAATGCG 1357
Query 1366 GGACTATTGGCCTTGACACGAGTTGGTAGTCGAAGGGTTGTCCAGATAGCTGCAGGCTTC 1425
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 GGATTATTGGCCTTGACACGAGTTGGTAGTCGAAGGGTTGTCCAGATAGCTGCAGGCTTC 1417
Query 1426 ATGATATTCTTCTCTATTCTCGGAAAATTTGGAGCTGTGTTTGCTTCAATTCCTGCGCCC 1485
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1418 ATGATATTCTTCTCCATTCTCGGAAAATTCGGAGCTGTGTTTGCTTCAATTCCTGCACCC 1477
Query 1486 ATCATTGCTGCTTTATACTGTCTCTTCTTCGCATACGTGGGAGCTGGAGGTTTGAGTTTC 1545
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1478 ATCATTGCTGCTTTATACTGTCTCTTCTTCGCGTACGTGGGAGCTGGAGGTTTGAGTTTC 1537
Query 1546 CTTCAATTCTGCAACTTAAACAGCTTCAGGACCAAGTTCATCTTAGGTTTCTCTGTCTTC 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 CTTCAATTCTGCAACTTAAACAGCTTCAGGACCAAGTTCATCTTAGGTTTCTCTGTCTTC 1597
Query 1606 CTGGGCTTGTCCATCCCTCAATACTTCAATGAGTACACCGCAATCAAAGGATATGGTCCG 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 CTGGGCTTGTCCATCCCTCAATACTTCAATGAGTACACCGCAATCAAAGGATATGGTCCG 1657
Query 1666 GTCCACACTGGGGCTCGTTGGTTCAACGATATGGTAAATGTCCCGTTCTCCTCAGAGCCT 1725
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1658 GTCCACACTGGGGCTCGTTGGTTCAATGATATGGTGAATGTCCCGTTCTCCTCAGAGCCT 1717
Query 1726 TTTGTTGCTGGAAGCGTCGCCTTCTTCTTGGACAACACACTGCACAAGAAAGACTCTTCG 1785
||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1718 TTTGTTGCTGGCAGCGTCGCTTTCTTCTTGGACAACACATTGCACAAGAAAGACTCTTCG 1777
Query 1786 ATAAGGAAAGACAGAGGGAAGCATTGGTGGGACAAGTTTAGATCTTTCAAAGGTGACACA 1845
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 ATAAGGAAAGACCGAGGGAAGCATTGGTGGGACAAGTTTAGATCTTTCAAAGGTGACACA 1837
Query 1846 AGAAGTGAAGAATTCTACTCTCTACCTTTCAATCTCAACAAGTACTTCCCATCTGTCTaa 1905
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1838 AGAAGTGAAGAATTCTACTCTCTTCCTTTCAATCTCAACAAGTATTTCCCATCTGTCTAA 1897
Query 1906 aagggaagagaagagcaaaaaagataactggaaaacaaagaaaatggtgaaaaCTCGAGT 1965
||||||||||||||||||| | |||||| ||||| |||| | ||||||||| |
Sbjct 1898 AAGGGAAGAGAAGAGCAAAGA-GATAACCGGAAA-CAAA-A---TGGTGAAAA---G--- 1945
Query 1966 TTCGCCATTGTTGACTTGGCCTCTGTGTCGTGGTTCGTTTGTTCAGTTCCTTTCACAACT 2025
| | | || | | || |||||||| ||||||||||||||| || ||||
Sbjct 1946 --C-C--T------CT-G---T--GT--CGTGGTTCTTTTGTTCAGTTCCTT-CATAACT 1985
Query 2026 TTGGAAACTTTAAATATCTCATCACATTCTATAGTCTTATTTACAAGAATGATGAATCTT 2085
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1986 TTGGAAACTTAAAATATCTC-TCACATTCTATAGTCTTATTTACAAGAATGATGAATCTT 2044
Query 2086 CTTAAAGAGCATTGTTGTTTACTCTCTCTCTAATGCTTTTGTCTTTGTAAATCCGAGGGA 2145
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2045 CTTAA-GAGCATTGTTGTTTACTCTCTCTCTAATGCTTTTGTCTTTGTAAATCCGAGGGA 2103
Query 2146 ACAGAAACACTACTTT-GTGATTTTGATTAGTTTCTAAACAAATCTTTAGCTTAATTTT 2203
||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2104 ACA----C--TACTTTTGTGATTTTGATTAGTTTCTAAACAAATCTTTAGCTTAATTTT 2156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83074824345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5