BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62900.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496475 jgi|Araly1|496475|fgenesh2_kg.8__2291__AT5G62900.1 977 0.0
> Ahg496475 jgi|Araly1|496475|fgenesh2_kg.8__2291__AT5G62900.1
Length=711
Score = 977 bits (529), Expect = 0.0
Identities = 561/576 (97%), Gaps = 4/576 (1%)
Strand=Plus/Plus
Query 1 TATAGACCCCTCACCTACGCT-T-T-ACTCTTTCACTCCTCTCTCTCCTGCTTTGCTCCG 57
||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||
Sbjct 1 TATAGACCCCTCACCTACGCTCTATAACTCTTTGACTCCTCTCTCTCCTGCTTTGCTCCG 60
Query 58 CCGTGAGAGGAGAAACAAATGGGGAATTGTCAAGCGGCGGAGGCGGCAACGACGGTGATA 117
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGTGAGA-GAGAAACAAATGGGGAATTGTCAAGCGGCGGAGGCGGCAACGACGGTGATA 119
Query 118 CAACAACCAGACGGTAAATCGGTTAGATTTTACTGTACAGTAAACGCGAGCGAAGTGATT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAACAACCAGACGGTAAATCGGTTAGATTTTACTGTACAGTAAACGCGAGCGAAGTGATT 179
Query 178 AAGTCCCATCCCGGTCACCACGTGGCTCTCCTCCTCTCTTCCGCCGTACCTCACGGTGGC 237
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 AAGTCTCATCCCGGTCACCACGTGGCTCTCCTCCTCTCCTCCGCCGTACCTCACGGTGGC 239
Query 238 TCTCTCCGCGTCACTCGTATAAAGCTTCTTCGTCCTTCTGATAACCTCTTGCTCGGTCAT 297
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 240 TCTCTCCGCGTCACTCGTATAAAGCTTCTCCGTCCTTCTGATAACCTCTTGCTCGGCCAT 299
Query 298 GTTTATAGACTCATCTCCTCCGAAGAGGTGATGAAAGGAATAAGAGCCAAGAAATCTGGA 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTCTATAGACTCATCTCCTCCGAAGAGGTGATGAAAGGAATAAGAGCCAAGAAATCTGGA 359
Query 358 AAGATGAAGAAGATTCATGGAGAGTTTTCTGTTGCAGAAGAAGAGATTAACCCACTAACC 417
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 AAGATGAAGAAGATTCATGGAGAGTTTTCTGTTGCAGAAGAAGAGATTAACTCACTAACC 419
Query 418 CTAAGATCTGAATCTGCTTCTGACAAAGACACTCAGAGAAGGATACATGAAAAGCAGAGA 477
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 CTAAGATCTGAATCTGCTTCTGACAAAGACACTCAGAGAAAGATACATGAAAAGCAGAGA 479
Query 478 GGAATGATGAACACAGGAGGAGCTACCAATAAAGTTAGAGCTTGGCAGCCTTCTCTTCAA 537
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 GGGATGATGAACACAGGAGGAGCAACCAATAAAGTTAGAGCTTGGCAGCCTTCTCTTCAA 539
Query 538 AGCATCTCAGAATCTACAAGCTAAAACACTTCAATC 573
|||||||||||||||||||||||||||||||| |||
Sbjct 540 AGCATCTCAGAATCTACAAGCTAAAACACTTCGATC 575
Score = 222 bits (120), Expect = 3e-57
Identities = 133/139 (96%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 607 tcttttttttatcatttcatttctctttgtattgttgtttttCCCAATCAAATTTGTAAA 666
||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 574 TCTTTTTTTGATCATTTGATTTGTCTTTGTATTGTTGTTTTTCCCAATCAAATTTGTAAA 633
Query 667 GGAAGAAGACCCATTTGATTGTGGTTGAAGAAGAAGAAACTTTTGTCATTTTTTAACTTT 726
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 634 GGAAGAAAACCCATTTGATTGTGGTTGAAGAAGAAGAAACTTTTGTCATTTTGTAACTT- 692
Query 727 AATAATAATAACTGAAGAA 745
|||||||||||||||||||
Sbjct 693 AATAATAATAACTGAAGAA 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5