BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62920.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496477 jgi|Araly1|496477|fgenesh2_kg.8__2293__AT5G62920.1 1155 0.0
> Ahg496477 jgi|Araly1|496477|fgenesh2_kg.8__2293__AT5G62920.1
Length=786
Score = 1155 bits (625), Expect = 0.0
Identities = 736/789 (93%), Gaps = 9/789 (1%)
Strand=Plus/Plus
Query 42 CATTCGTTGATCAATGGCTGAAGTTATGCTACCGAGGAAGATGGAGATTCTCAACCATTC 101
||||| ||||||||||||||||||| |||||| ||| ||||||||||||| |||| || |
Sbjct 1 CATTCTTTGATCAATGGCTGAAGTTTTGCTACTGAGAAAGATGGAGATTCCCAACGATCC 60
Query 102 TTCAAAGTTTGGATCACCGGATCCTCTTCATGTTCTTGCCGTCGACGACAGTCACGTTGA 161
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 61 TTCAAAGTTTGGATCACCGGATCTTCTTCATGTTCTTGCCGTCGATGACAGTCACGTTGA 120
Query 162 TCGTAAATTCATCGAGCGTTTGCTCAGAGTATCTTCTTGCAAAGTTACTGTTGTTGATAG 221
||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 121 TCGGAAATTCATTGAGCGTTTGCTCAGAGTCTCTTCTTGTAAAGTTACTGTTGTTGACAG 180
Query 222 TGCAACAAGAGCTCTCCAATACCTTGGTTTGGATGTTGAGGAAAAATCAGTCGGTTTTGA 281
||||||||||||||||||||| |||||||||| ||||||||||||||| || |||||| |
Sbjct 181 TGCAACAAGAGCTCTCCAATATCTTGGTTTGGGTGTTGAGGAAAAATCCGTTGGTTTTCA 240
Query 282 GGATTTGAAGGTTAATTTAATTATGACTGATTACTCAATGCCCGGTATGACTGGATATGA 341
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATTTGAAGGTTAACTTAATTATGACTGATTACTCAATGCCCGGTATGACTGGATATGA 300
Query 342 ACTCTTGAAGAAGATCAAAGAATCCTCAGCTTTTAGAGAAGTACCGGTGGTAATTATGTC 401
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 301 ACTCTTGAAGAAGATCAAAGAATCCTCAGCTTTTAGACAAGTACCGGTGGTGATTATGTC 360
Query 402 CTCCGAGAACATTTTGCCTCGTATTGATAGATGTCTTGAAGAAGGGGCTGAAGATTTCTT 461
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 CTCTGAGAACATTTTGCCTCGTATTGATAGATGTCTTGAAGAAGGAGCTGAAGATTTCTT 420
Query 462 ACTGAAGCCGGTAAAACTCTCGGATGTAAAAAGATTAAGAGATTCTCTAATGAAGGTTGA 521
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 421 ACTGAAGCCAGTAAAACTCTCTGATGTAAAAAGATTAAGAGATTCTCTAATGAAAGTTGA 480
Query 522 AGATTT-GTCTTTCACAAAGAGTATTCAGAAGAGAGAGCTAGAAACAGAGAATGTCTACC 580
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 AGATTTAG-CTTTCACAAAGAGTATTCAGAAGAGAGAGCTAGAAACAGAGAACGTCTACC 539
Query 581 CTGTTCACTCGCAGCTCAAACGCGCAAAGATCTGAGCTCTCCGATGCAAATTCCGTGACT 640
|||||||||| |||||||||||||| |||||||||||| ||| ||||||||||| |||||
Sbjct 540 CTGTTCACTCACAGCTCAAACGCGCGAAGATCTGAGCTTTCCAATGCAAATTCCATGACT 599
Query 641 GGATCTTAGAAAAAGCCTTTTCATATACAGA-A-GCTTCAAGACT-CAATGCACTTGAGC 697
|||||||||||||||| |||| ||||||||| | ||||||||||| || |||||||||||
Sbjct 600 GGATCTTAGAAAAAGCTTTTT-ATATACAGAGAAGCTTCAAGACTTCA-TGCACTTGAGC 657
Query 698 CTA-CACTGATGATTCTCGCCA-GCTTAATGACCTATACAATTTTCCAACCCCTATGGCC 755
||| |||||||||||||| | | | ||||||||||||||||||||||| |||||| |||
Sbjct 658 CTAACACTGATGATTCTCTCAAAGTTTAATGACCTATACAATTTTCCAGCCCCTACGGCT 717
Query 756 TTTTTCGCTGATTGAATTCAGTGGGTTTATTCATATAGTAGTAATGTAAATGGTATAGAG 815
||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 718 TTTTTTGCTGATTGAATTCAGCGGATTTATTCATATAGTAGTAATGTAAATGGCATAGAG 777
Query 816 ATGAGCAAA 824
|||||||||
Sbjct 778 ATGAGCAAA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5