BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62930.1
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496478 jgi|Araly1|496478|fgenesh2_kg.8__2294__AT5G62930.1 1347 0.0
> Ahg496478 jgi|Araly1|496478|fgenesh2_kg.8__2294__AT5G62930.1
Length=947
Score = 1347 bits (729), Expect = 0.0
Identities = 827/873 (95%), Gaps = 12/873 (1%)
Strand=Plus/Plus
Query 1 AGTGAACCGGAGGGAGACAGCGAGATGAGGCCGGAGATAGTTCTGTTCGGCGACTCGATC 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTGAACCGGAGGGAGACAGAGAGATGAGGCCGGAGATAGTTCTGTTCGGCGACTCGATT 60
Query 61 ACGGCGCAGTCTTTTAGGTCCGGCGGTTGGGGATCTGCTCTTGCCGACGCTTACTCTCGC 120
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGGCTCAGTCGTTTAGATCCGGCGGTTGGGGATCTGCTCTTGCCGACGCTTACTCTCGC 120
Query 121 AAGGCTGATGTTGTGGTTCGAGGCTACGGCGGCTACAACACCCGATGGGCTCTCTTCTTG 180
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AAGGCTGATGTTGTAGTTCGTGGCTATGGCGGCTACAACACCCGATGGGCTCTCTTCTTG 180
Query 181 CTTCATCACATCTTCCCTCTCGGCTCTTCGTCTCCTCCTGTTGCTACGACGATATTCTTC 240
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CTTCATCACATTTTCCCTCTCGGCTCTTCGTCTCCTCCTGTTGCGACGACGATATTCTTC 240
Query 241 GGTGCAAACGATGCAGCTCTCAAAGGAAGAACCAGTGATAGACAACATGTGCCGGTGGAA 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTGCAAACGATGCAGCTCTTAAAGGAAGAACCAGTGATAGACAACATGTGCCGGTGGAA 300
Query 301 GAGTACACAGATAATGTCAGAAAGATTGTTCAGCATTTGAAGAAATGTTCACCTACAATG 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GAGTACAGAGATAATGTCAGAAAGATTGTTCAGCATTTGAAGAAATGTTCACCTACCATG 360
Query 361 CTAATTGTGCTTATAACTCCACCACCAATTGATGAAGCTGGACGTCAAAGTTATGCAGAA 420
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTAATCGTGCTTGTAACTCCACCACCAATTGATGAAGCTGGACGTCAAAGTTATGCAGAA 420
Query 421 TCAATCTACGGTGAGAAAGCTATGAAAGAGCCTGAGAGAACAAACGAAACAACAGGG-GT 479
|||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 421 TCAATCTATGGTGAGAAAGCTATGAAAGAGCCTGAGAGAACAAACCAAACAAC-GGGAAT 479
Query 480 ATATGCACAACATTGTGTTGCATTGGCCGAGGAACTCGGTCTGCGATGTGTCAACTTATG 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 ATATGCACAACATTGTGTTGCATTGGCCGAGGAACTTGGTCTGCGATGTGTCAACTTATG 539
Query 540 GTCTAAGATGCAGGAAACCAATGATTGGCAGAAAAAGTACCTAAGTGATGGGCTCCATCT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 GTCTAAGATGCAGGAAACCAATGATTGGCAGAAAAAGTACCTAAGTGATGGGCTACATCT 599
Query 600 CACGCCTGAAGGCAATGGGGTAGTTTTTGATGAAGTCTCGAGAGTTTTTAGAGAAGCTTG 659
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 CACGCCTGAAGGCAATGGAGTAGTTTTTGATCAAGTCTCGAGAGTTTTTAGAGAAGCTTG 659
Query 660 GCTCTCTCCCGAAGAAATGCCGTTTGATTTCCCCCATCATTCGCATATCGATGGTAAAAA 719
||||||||| ||||||||||| ||||||||||| |||||||| || ||||| ||| ||||
Sbjct 660 GCTCTCTCCTGAAGAAATGCCATTTGATTTCCCTCATCATTCACAGATCGACGGTGAAAA 719
Query 720 CCCATCGAAAGCTTTTGAAGAGCGTTGCTTATAACGATCATCCCCAAATTCATGAGCAGG 779
||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 720 CCCATCGAAAGCTTTCGAAGAACGTTGCTTATAACGATCATCCC-AAATTCATGAG---- 774
Query 780 TTTGTTTTGATTTAAATTCATGAACACGTTTCAATGTTGTGATTTAGAAAACTCTCGGAT 839
||| | |||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 775 TTT-T---GATTTAAATTCATGAACACGTTTCAATGTTGTCATTTAGAAAACTCTCC-AT 829
Query 840 GTGAATAAATACCTAAAAAGTGCATCATCACTA 872
||||||||||| |||||||||||||||||||||
Sbjct 830 GTGAATAAATATCTAAAAAGTGCATCATCACTA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37665441996
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5