BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62940.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951089 jgi|Araly1|951089|scaffold_802976.1 1810 0.0
Ahg951049 jgi|Araly1|951049|scaffold_802936.1 93.5 4e-18
> Ahg951089 jgi|Araly1|951089|scaffold_802976.1
Length=1172
Score = 1810 bits (980), Expect = 0.0
Identities = 1102/1159 (95%), Gaps = 16/1159 (1%)
Strand=Plus/Plus
Query 172 CACAAAATGGGTCTCACTTCTCTTCAAGTTTGCATGGATTCTGATTGGCTCCAGGAATCC 231
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 18 CACCAAATGGGTCTCACTTCTCTTCAAGTTTGCATGGATTCTGATTGGCTCCAGGAAGCT 77
Query 232 GAGTCATCAGGAGGAAGCATGTTAGACTCTTCAACGAATTCTCCGTCAGCAGCCGACATA 291
||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct 78 GAGTCATCAGGAGGAAGCATGCTAGACTCTTCAACGACTTCTCCATCAGCAGCCGACATA 137
Query 292 CTAGCAGCTTGCAGCACTAGACCACAAGCCTCGGCCGTGGCTGTAGCCGCTGCAGCTCTG 351
||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 138 CTAGCTGCTTGTGGCACTAGACCACAAGCCTCGGCCGTGGCTGTAGCCGCTGCGGCGCTG 197
Query 352 ATGGACGGTGGAAGGAGGCTGCGTCCACCTCACGACCATCCTCAAAAGTGTCCTCGTTGC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 ATGGACGGTGGAAGGAGGCTGCGTCCACCTCACGACCATCCTCAAAAGTGTCCTCGTTGC 257
Query 412 GAGTCAACACATACTAAGTTCTGTTACTACAATAACTACAGCCTCTCTCAGCCTCGTTAC 471
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 258 GAGTCAACACACACTAAGTTCTGTTACTACAATAACTATAGCCTCTCTCAGCCTCGTTAC 317
Query 472 TTCTGCAAGACTTGTCGCCGTTACTGGACAAAAGGCGGAACTCTAAGGAATATTCCGGTT 531
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 318 TTCTGCAAGACTTGTCGCCGTTACTGGACCAAAGGCGGCACTCTAAGGAATATTCCGGTC 377
Query 532 GGTGGTGGATGCCGTAAAAACAAGAAACCATCTTCCTCTAATTCCTCCTCC-TCCACTTC 590
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 378 GGTGGTGGATGCCGTAAAAACAAGAAACCATCTTCCTCTAATTCCTCC-CCATCCACTTC 436
Query 591 TTCCGGCAAAAAACCATCCAACATCGTTACCGCCAATACCTCTGATCTTATGGCTTTAGC 650
||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct 437 TTCCGGCAAAAAACCATCCAACATCGTTACCACTAATACCACTGATCTTATGGCTTTAGC 496
Query 651 ACATTCTCATCAAAATTACC---A--A-C---ATTCTCCTCTAGGGTTTTCACATTTTGG 701
|||||||||||||||||||| | | | |||| |||||||||||||||||||||||
Sbjct 497 ACATTCTCATCAAAATTACCAAAACTACCAAAATTCCCCTCTAGGGTTTTCACATTTTGG 556
Query 702 TGGGATGATGGGGTCTTACTCAACTCCGGAGCATGGTAACGTTGGTTTCTTGGAGAGCAA 761
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TGGGATGATTGGGTCTTACTCAACTCCGGAGCATGGTAACGTTGGTTTCTTGGAGAGCAA 616
Query 762 GTATGGCGGTTTGCTTTCGCAGAGCCCTAGACCTATTGATTTCTTGGACAGTAAGTTTGA 821
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GTATGGGGGTTTGCTTTCGCAGAGCCCTAGACCTATTGATTTCTTGGACAGTAAGTTTGA 676
Query 822 TCTCATGGGAGTGAACAATGACAACCTGGTCATGGTTAATCATGGAAGTAACGGAGatca 881
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 677 TCTCATGGGAGTGAACAATGACAACCTGGTCATGGTTGATCATGGAAGTAACGGAGATCA 736
Query 882 tcatcatcatca-taatcatcaCATGGGTCTGAATCACGGTGT-AGGTCTTaacaacaac 939
|| ||||||| | ||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 737 TCGTCATCAT-AGTAATCATCACATGGGTCTGAATCACGG-GTTAGGTCTTAATAACAAC 794
Query 940 aacaacaaTGGTGGATTTAATGGGATTTCTACGGGAGGCAATGGAAATGGTGGTGGTCTC 999
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 795 AGCAACAATGGTGGATTTAATGGGATTTCTCCGGGAGGCAATGGAAATGGTGGTGGTCTC 854
Query 1000 ATGGATATATCGACATGCCAAAGACTTATGCTATCTAATTATGATCATCACCATTACAAT 1059
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 855 ATGGATATATCGACATGCCAAAGACTTATGCTATCTAATTATGACCATCATCATTATAAT 914
Query 1060 CATCAAGAAGATCATCAAAGGGTAGCAACAATAATGGATGTGAAGCCAAATCCGAAGTTG 1119
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 915 CATCAAGAAGATCATCAAAGGGTAGCAACAATAATGGGTGTGAAGCCAAATGCGAAGTTG 974
Query 1120 TTATCGCTTGATTGGCAGCAAGATCAATGCTACTCCAATGGTGGTGGTAGCGGAGGCGCA 1179
||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||| |
Sbjct 975 TTATCGCTTGATTGGCAGCAAGATCAAGGCTACTCAAATGGTGGTGGTAGTGGAAGCGTA 1034
Query 1180 GGAAAATCCGACGGTGGTGGATACGGCAATGGTGGTTATATCAACGGTTTAGGTTCGTCG 1239
|||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1035 GGAAAATCTGACGGTGGTGGATACGGCAGTGGTGGTTATATCAATGGTTTAGGTTCGTCG 1094
Query 1240 TGGAATGGTTTGATGAATGGCTATGGAACGTCCACTAAAACAAACTCCTTGGTTTGATAA 1299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1095 TGGAATGGTTTGATGAATGGCTATGGATCGTCCACTAAAACAAACTCCTTGGTTTGATAA 1154
Query 1300 GTTAATCAGAACTTCTTTT 1318
|||||||||||||| ||||
Sbjct 1155 GTTAATCAGAACTT-TTTT 1172
> Ahg951049 jgi|Araly1|951049|scaffold_802936.1
Length=637
Score = 93.5 bits (50), Expect = 4e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 170 AACACAAAATGGGTCTCACTTCTCTTCAAGTTTGCATGGATTCTGATTGGCTCCAG 225
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AACACCCAATGGGTCTCACTTCTCTTCAAGTTTGCATGGATTCTGATTGGCTCCAG 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5