BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62960.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951091 jgi|Araly1|951091|scaffold_802978.1 1816 0.0
> Ahg951091 jgi|Araly1|951091|scaffold_802978.1
Length=1085
Score = 1816 bits (983), Expect = 0.0
Identities = 1052/1085 (97%), Gaps = 6/1085 (1%)
Strand=Plus/Plus
Query 142 AAAGACTGAAACTTTATCAAAATGGTC-TCATCGTCTTCATCATTGTTATCTCCATCTTC 200
||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACTGAAACTTTTTCAAAATGG-CTTCATCGTCTTCATCATTGTTATCTCCATCTTC 59
Query 201 ATATACAGAGTTAAAAGATGCTTGGCATCCATCAACAACAGCGAACACAACAGAATCAAG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATATACAGAGTTAAAAGATGCTTGGCATCCATCAACAACAGCGAACACAACAGAATCAAG 119
Query 261 CTACTGGTTTAATTGGAGGGTTATGATCTGCTGCATATGGATGGCTATAGCGACTGTGAT 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTACTGGTTTAATTGGAGGGTTATGATCTGCTGCATATGGATGGCTATAGCGACTGTGAT 179
Query 321 CACAGCTTTTCTTATATTCAAATACGAAGGTTTTCGTCGGAAACGAAGTGACGTTGGTGA 380
||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 180 CACAGCTTTTCTTATATTCAAATACGAGGGCTTTCGTCGGAAACGAAGTGACGGTGGTGA 239
Query 381 AGTTGACGGAGGAGAGAAAGAGTGGTCGGGAAATGTATATGAAGACGAGACATGGAGGCC 440
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGTCGACGGAGGAGAGAAAGAGTGGTCGGGAAATGTATATGAAGACGAGACATGGAGGCC 299
Query 441 TTGTCTTCGTAATATTCATCCAGCTTGGCTTCTTGC-TTTCCGAGTTGTTGCCTTCTTCG 499
|||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 300 TTGTCTTCGTAATATTCACCCAGCTTGGCTTCTTGCGTTTA-GAGTTGTTGCCTTCTTCG 358
Query 500 TTCTTCTTGTTATGTTGATTGTTATCGGCCTTGTTGATGGACCTACCATCTTCTTCTACT 559
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TTCTTCTTGTTATGTTGATTGTTATTGGCCTTGTTGATGGACCTACCATCTTCTTCTACT 418
Query 560 ACACACAGTGGACTTTTGGTCTGATCACTCTCTATTTCGGATTAGGCTCGCTTCTTTCTT 619
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACACACAGTGGACATTTGCTCTGATCACTCTCTATTTCGGATTAGGCTCGCTTCTTTCGC 478
Query 620 TGCACGGATGTTACCAATACAACAAAAGAGCAGCTGGCGATAGAGTAGATAGCATTGAAG 679
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 TGCACGGATGTTACCAATACAACAAAAGAGCAGCTGGTGATAGAGTAGATAGCATTGAAG 538
Query 680 CCATAGACTCAGAGAGAGCAAGATCCAAAGGAGCTGATAATACTATTCAACAGAGTCAAT 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 CCATAGACTCAGAGAGAGCAAGATCCAAAGGAGCTGATAATACTATTCAACAGAGCCAAT 598
Query 740 ACTCTAGTAATCCAGCTGGTTTTTGGGGATATGTTTTCCAGATTATCTTTCAGATGAATG 799
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 ACTCTAGTAATCCAGCTGGTTTTTGGGGATATGTTTTCCAGATAATCTTTCAGATGAATG 658
Query 800 CAGGTGCAGTTTTGCTTACTGACTGTGTCTTCTGGTTCATCATTGTTCCTTTCCTTGAGA 859
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAGGTGCAGTTTTGCTCACGGACTGTGTCTTCTGGTTCATCATTGTTCCTTTCCTTGAGA 718
Query 860 TCCATGATTATAGCCTCAATGTTCTGGTGATCAACATGCACTCTCTTAATGCGATTTTCT 919
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 TCCATGATTATAGCCTCAATGTTCTGGTGATCAACATGCACTCTCTTAACGCGATTTTCT 778
Query 920 TGCTTGGTGATGCTGCATTGAATTCTCTGAGCTTTCCATGCTTCAGAATTGCTTACTTCT 979
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 TGCTTGGTGATGCTGCATTGAATTCTCTGAGCTTTCCATGCTTTAGAATTGCTTACTTCT 838
Query 980 TCTTCTGGACTATAGCTTATGTTATATTCCAATGGGCCCTCCACTCCTTAGTCCATATAT 1039
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTTCTGGACAATAGCTTATGTTATATTCCAATGGGCCCTCCACTCCTTAGTCCATATAT 898
Query 1040 GGTGGCCTTACCCATTCTTGGACTTATCATCACACTATGCTCCACTATGGTACTTCTCAG 1099
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGTGGCCTTACCCATTCCTGGACTTATCATCACACTATGCTCCACTATGGTACTTCTCAG 958
Query 1100 TGGCAGTGATGCATTTGCCATGCTATGGAGCCTTTGCCTTATTGGTGAAGCTAAAACATC 1159
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 959 TGGCAGTGATGCATTTGCCATGCTATGGAGCCTTTGCTTTGTTGGTGAAGCTAAAACATC 1018
Query 1160 GGCTT-CTACAGAGATGGTTTCCTGAGTCGTACCAGAGTCCTCGGTAGTAGCTTGCAAAG 1218
|| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1019 GG-TTACTACAAAGATGGTTTCCTGAGTCTTACCAGAGTCCTCGGTAGTAGCTTGCAAAG 1077
Query 1219 CAAGC 1223
|||||
Sbjct 1078 CAAGC 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5