BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62980.1 Length=634 Score E Sequences producing significant alignments: (Bits) Value Ahg332523 jgi|Araly1|332523|fgenesh1_pm.C_scaffold_8001866 599 8e-171 > Ahg332523 jgi|Araly1|332523|fgenesh1_pm.C_scaffold_8001866 Length=396 Score = 599 bits (324), Expect = 8e-171 Identities = 372/396 (94%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 56 ATGGAGAAAGACATGGCAATGATGGGAGACAAACTGATACTGAGAGGCTTGAAATTTTAT 115 |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGGAGAAAGACATGGCATTGATGGGAGACAAACTGATACTGAGAGGTTTGAAATTTTAC 60 Query 116 GGTTTCCATGGAGCTATTCCTGAAGAGAAGACGCTTGGCCAGATGTTTATGCTTGACATC 175 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 61 GGTTTCCATGGAGCTATTTCTGAAGAGAAGACGCTTGGCCAGATGTTTATGCTTGATATA 120 Query 176 GATGCTTGGATGTGTCTCAAAAAGGCTGGTCTATCAGACAACTTAGCTGATTCTGTCAGC 235 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 121 GATGCTTGGATGTGTCTCAAAAAGGCCGGTCTATCAGACAACTTAGCTGATTCAATCAGC 180 Query 236 TATGTCGACATTTACAACGTGGCAAAGGAAGTTGTAGAAGGGTCATCAAGAAACCTTCTG 295 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 181 TATGTCGACATTTACAACTTGGCAAAGGAAGTTGTAGAAGGATCATCAAGAAACCTTCTG 240 Query 296 GAGAGAGTTGCAGGACTTATAGCTTCCAAAACTCTGGAAATATCCCCTCGGATAACAGCT 355 |||||||||||||||||||||||||||||||||||||||| || ||||| ||| || ||| Sbjct 241 GAGAGAGTTGCAGGACTTATAGCTTCCAAAACTCTGGAAACATTCCCTCAGATTACCGCT 300 Query 356 GTTCGAGTGAAGCTATGGAAGCCAAATGTTGCGCTTATTCAAAGCACTATCGATTATTTA 415 |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| Sbjct 301 GTTCGAGTGAAGCTATGGAAGCCAAATGTTCCGCTTATTCAAAGCGGTCTCGATTATTTA 360 Query 416 GGTGTCGAGATTTTCAGAGATCGCGCAACTGAATAA 451 || || || ||||||||| ||||||||||||||||| Sbjct 361 GGGGTTGAAATTTTCAGAAATCGCGCAACTGAATAA 396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23216856453 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5