BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G62980.1

Length=634
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332523 jgi|Araly1|332523|fgenesh1_pm.C_scaffold_8001866           599    8e-171


> Ahg332523 jgi|Araly1|332523|fgenesh1_pm.C_scaffold_8001866
Length=396

 Score =  599 bits (324),  Expect = 8e-171
 Identities = 372/396 (94%), Gaps = 0/396 (0%)
 Strand=Plus/Plus

Query  56   ATGGAGAAAGACATGGCAATGATGGGAGACAAACTGATACTGAGAGGCTTGAAATTTTAT  115
            |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| 
Sbjct  1    ATGGAGAAAGACATGGCATTGATGGGAGACAAACTGATACTGAGAGGTTTGAAATTTTAC  60

Query  116  GGTTTCCATGGAGCTATTCCTGAAGAGAAGACGCTTGGCCAGATGTTTATGCTTGACATC  175
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct  61   GGTTTCCATGGAGCTATTTCTGAAGAGAAGACGCTTGGCCAGATGTTTATGCTTGATATA  120

Query  176  GATGCTTGGATGTGTCTCAAAAAGGCTGGTCTATCAGACAACTTAGCTGATTCTGTCAGC  235
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||
Sbjct  121  GATGCTTGGATGTGTCTCAAAAAGGCCGGTCTATCAGACAACTTAGCTGATTCAATCAGC  180

Query  236  TATGTCGACATTTACAACGTGGCAAAGGAAGTTGTAGAAGGGTCATCAAGAAACCTTCTG  295
            |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  TATGTCGACATTTACAACTTGGCAAAGGAAGTTGTAGAAGGATCATCAAGAAACCTTCTG  240

Query  296  GAGAGAGTTGCAGGACTTATAGCTTCCAAAACTCTGGAAATATCCCCTCGGATAACAGCT  355
            |||||||||||||||||||||||||||||||||||||||| || ||||| ||| || |||
Sbjct  241  GAGAGAGTTGCAGGACTTATAGCTTCCAAAACTCTGGAAACATTCCCTCAGATTACCGCT  300

Query  356  GTTCGAGTGAAGCTATGGAAGCCAAATGTTGCGCTTATTCAAAGCACTATCGATTATTTA  415
            |||||||||||||||||||||||||||||| ||||||||||||||  | |||||||||||
Sbjct  301  GTTCGAGTGAAGCTATGGAAGCCAAATGTTCCGCTTATTCAAAGCGGTCTCGATTATTTA  360

Query  416  GGTGTCGAGATTTTCAGAGATCGCGCAACTGAATAA  451
            || || || ||||||||| |||||||||||||||||
Sbjct  361  GGGGTTGAAATTTTCAGAAATCGCGCAACTGAATAA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23216856453


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5