BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62990.1
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496483 jgi|Araly1|496483|fgenesh2_kg.8__2299__AT5G62990.1 2241 0.0
> Ahg496483 jgi|Araly1|496483|fgenesh2_kg.8__2299__AT5G62990.1
Length=1597
Score = 2241 bits (1213), Expect = 0.0
Identities = 1456/1573 (93%), Gaps = 17/1573 (1%)
Strand=Plus/Plus
Query 54 CTTTTACTTTTGTCTTTGTAAGGTTC-ATCACCGCAATTACCAAAGGATCAAGAAGATGA 112
||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct 33 CTTTTACTTTTGTCTTTGTAAAATTCAATCACTGCAATTACCAAAGGATCAAGAATATGA 92
Query 113 ATTTCTGAGAGATTTTGCGGATGATGATGGCGCTTACTCAACTGGTTCCTTCTTCTCCAG 172
||| |||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 93 CTTTTTGAGGGATTTTGCGGATGATGATGGCGCTTACTCAACTGGTTCCTTCCTCACCAG 152
Query 173 AGAAGCTGTTCTGTTTCTCCAGCTTCTTCCTCCCTTCAATTCCTCTGGAGATTCGTAGAA 232
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 153 ACAAGCTTTTCTTTTTCTCCAGCTTCTTCCTCCCTTCAATTCCTCTGGAGATTCGTACAA 212
Query 233 GTAACGTAACTACGAAAACCAGTTCCAAGAAACTCGGAAGTCTGTCTTTGAACATCTCAT 292
||||| ||| ||| | |||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 213 GTAACCTAAGTACTAGAACCAGTTCCAAGAAACTCGGAAGTCTGTCCTTGAATATCTCAT 272
Query 293 GTTCAGCTCACAAGATTGTTCGGAGTCCATCTTTAGACAGACATGTAGTGAAGCAGAACA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GTTCAGCTCACAAGATTGTTCGGAGTCCATCTTTAGACAGACATGTAGTGAAGCAGAACA 332
Query 353 GAGTTCGCTTTGTGCAGAAGTTGAACACTTTGCTTCTCTCTAAACCAAAGCATTACATTC 412
||||||||||||||||||||||||| ||| | |||||||| ||||||||||||| ||| |
Sbjct 333 GAGTTCGCTTTGTGCAGAAGTTGAAAACTATACTTCTCTCGAAACCAAAGCATTTCATAC 392
Query 413 CAATTGAAATCCTCTATAAATGTCGTTCTTACCTCTGCATCGAAAATCCATTGG-CCATT 471
||||| ||||||| || ||||| || ||||||||||||||||||||||| | || |||||
Sbjct 393 CAATTCAAATCCTTTACAAATGCCGATCTTACCTCTGCATCGAAAATCC-TCGGGCCATT 451
Query 472 CTCTCAATGATCCGTCGGTATCCTACAATCTTTGAACTTTTTACGACACCTACGCCACAT 531
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 452 CTCTCCATGATTCGTCGGTATCCTACAATCTTTGAACTTTTTACAACACCTACGCCACAT 511
Query 532 TTGCCTATGAATGCCACTAAGCCGTTATCTCAACTCTGTGTTCGTTTGACATCGGCTGCA 591
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 512 TTGCCTATGAATGCCACAAAGCCGTTATCTCAACTCTGTGTCCGTTTGACATCTGCTGCA 571
Query 592 TCATCCCTTGCAATGCAAGAATTGAATCTGAAGTCTGAGATCTCTGATAAATTGGCTACT 651
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 572 TCATCCCTTGCCATGCAAGAATTGAATCTGAAGTCTGAGATCTCTGATCAATTGGCTACT 631
Query 652 AAGCTCCAGAAGCTACTAATGTTGTCATCTCACCGCAGGTTGCTTTTGTCTAAACTGGTT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AAGCTCCAGAAGCTACTAATGTTGTCATCTCACCGCAGGTTGCTTTTGTCTAAACTGGTT 691
Query 712 CACATTGCCCCAGATTTTGGCTTCCCTCCTAATTTCAGGTCTCGGCTCTGCAATGACTAT 771
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 692 CACATCGCCCCGGATTTTGGCTTCCCTCCTAATTTCAGGTCTCGCCTCTGCAATGACTAT 751
Query 772 CCGGACAAGTTCAAGACTGTGGATACTTCCTATGGAAGAGCACTGGAGCTTGTCTCGTCG 831
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct 752 CCTGACAAGTTCAAGACTGTGGATACTTCCTACGGAAGAGCACTTGAGCTTGTCTCGTGG 811
Query 832 GATCCCGAATTGGCGAACCAAATGCCATCTCCTGAAGTTG---ATAGGGGTTTGATTGTT 888
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 812 GATCCCGAATTGGCAAACCAAATGCCATCTCCTGAAGTTGTTGATAGGGGTTTGATTGTT 871
Query 889 GATCGTCCTTTGAAGTTCAAGCGCTTGAATCTTCGGAGAGGTTTAAATTTGAAGAGACGG 948
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct 872 GATCGTCCTTTGAAGTTCAAGCGTTTGAATCTTCGGAAAGGTTTAAATTTGAAGAGGCGA 931
Query 949 CACCAAGGTTTCTTGATAAAGTTCAGAGAATCACCTGACGTGTGTCCTTACAAAATGTCA 1008
|||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 932 CACCAAAACTTCTTGATAAAATTTAGAGAATCACCTGATGTGTGTCCTTACAAAATGTCA 991
Query 1009 TCTGACTATCTGGCAAGTGAGTCAATTGAGGCGGAGAAGCGAGCTTGCGCAGTTGTAAGA 1068
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 992 TCTGAAGATCTGGCAAGTGAGTCAATTGAGGCGGAGAAGCGAGCGTGCGCAGTTGTAAGA 1051
Query 1069 GAGGTGTTGGGGTTAACGGTTGAGAAAAGGACCTTGATTGATCATTTGACACATTTCAGG 1128
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1052 GAGGTGTTGGGGTTAACGGTTGAGAAAAGGACGTTGATTGATCATTTGACACATTTCAGG 1111
Query 1129 AAGGAGTTTTCTTTACCAAATAAGTTAAGAG-ACTTGATTGTGAGACATCCAGAGCTATT 1187
||||||||| |||||||||| |||||||||| | ||||| || |||||||||||||||||
Sbjct 1112 AAGGAGTTTGCTTTACCAAACAAGTTAAGAGCA-TTGATAGTCAGACATCCAGAGCTATT 1170
Query 1188 CTATGTGAGTATAAAAGGCATGAGAGACTCTGTGTTTCTCGTTGAAGCATACAATGACAA 1247
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1171 CTATGTGAGTATAAAAGGCACGAGAGACTCTGTGTTTCTCGTTGAAGCATACAACGACAA 1230
Query 1248 TGGTGATCTTCTAGATAAAGATGAGAGATTGGTGATAAGAGAACGTTTGATAGATCTTAT 1307
||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1231 TGGTGATCTTCTAGAGAAAGATGAGACATTGGTGATAAGAGAACGATTGATAGATCTTAT 1290
Query 1308 TCAAGAAGGAAAGAGAATTAGACGTGAACGAAGAAGAAAAGGCGCCACACTTGGTGATAA 1367
|||||||||||||||||||||||||||||| |||| |||||||| | | | || ||
Sbjct 1291 TCAAGAAGGAAAGAGAATTAGACGTGAACGGAGAAAAAAAGGCGATAAAAGAG-TGG-AA 1348
Query 1368 AAGCGTGG-AA-GA-GAAAAGGAAAgatgatgaaacaattgatgattatgatagtgatct 1424
|| | | || | || || | || |||||||| ||||||||||| || ||||||||
Sbjct 1349 GAGTATAGCAATGGTGATAAC-A--GA-GATGAAACCATTGATGATTACGAAAGTGATCT 1404
Query 1425 ggatgatgaatatgaagatgGGTTTGAGAATTTGTTTGACTCAGAAGATTTAGGTGTGGA 1484
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1405 GGATGATGAATATGAAGATGGCTTTGAGAATTTGTTTGACTCAGAAGATTCAGGTGTGGA 1464
Query 1485 ATATCATTTCGACGAAGAAGATGATGATGATGAGGCAGGGGTTAATGGTGAAAGTGTAGA 1544
||||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||
Sbjct 1465 ATATCATTTCGACGAAGAAGAAGATGATGACGAGGCACTGGTTAATGGTGAAAGTATAGA 1524
Query 1545 GTATTGGAGTAGAAAGCTTTCGTCTTCAGGTAGTAGCAGTGATGAAGCAAATAGTGCTGT 1604
||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||
Sbjct 1525 GTATTGGAGTAGAAAGCTTTCTTCTTCTGGTAGTAACAGTGATGAAGCAAAGAGTGCTGT 1584
Query 1605 GGAATCATGGTGA 1617
|||||||||||||
Sbjct 1585 GGAATCATGGTGA 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60601579795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5