BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63000.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332525 jgi|Araly1|332525|fgenesh1_pm.C_scaffold_8001868 950 0.0
> Ahg332525 jgi|Araly1|332525|fgenesh1_pm.C_scaffold_8001868
Length=603
Score = 950 bits (514), Expect = 0.0
Identities = 576/606 (95%), Gaps = 3/606 (0%)
Strand=Plus/Plus
Query 75 ATGGAAGCGGTAGAAAAACCCGAAGAAACAATCCCAGGGAATTCTTCAAGATTAGCTGGA 134
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCGGTAGAAAAACCCGAAGAAACTATCCCAGGGAATTCTTCAAGATTAGCTGGA 60
Query 135 AATCCCAACTGGGGAACAGCAACTGTTGTTGGAGTATTTGCAGGATTGCTATATGGAGGG 194
|||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 61 AATCCCAACTGGGGAACAGCAACTGTTGTTGGGGTCTTTGCAGGATTGTTATATGGAGGT 120
Query 195 AGCAAAGAAGCTTCTGCTTCTGTGAGCAAAGATGCAGAAGTGATGTTGAAGATGGGTAGT 254
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 AGCAAAGAAGCTTCTGCTTCTGTGAGCAAGGATGCAGAAGTGATGTTGAAGATGGGTAGT 180
Query 255 ACACAGGATAAGCGTGAACAACACAGGTTGATGCGAGATGCAATGGAGAAAAGGTTCATC 314
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ACACAGGATAAGCGTGAACAACACAGATTGATGCGAGATGCAATGGAGAAAAGGTTCATC 240
Query 315 CGAGTAACTCGTGGCTCCCTCATTGGAGGGATGCGTCTTGGAATGTTCACTGCTTCCTTC 374
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||
Sbjct 241 CGAGTAACTCGTGGCTCTCTCATTGGAGGGATGCGCCTTGGAATGTTTACTGCCTCTTTC 300
Query 375 TTTAGTCTACAAAACTTTTTAGCTGAGACCCGAGGAGTGCATGATGTTTTCAATGTGGTT 434
|| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 301 TTCAGTCTACAAAACTTTTTAGCTGAGACGCGAGGAGTTCATGATGTTTTCAATGTTGTT 360
Query 435 GGAGCTGGTTCAGCTACTGCTGCAGTTTTTGGCCTAATCATGCCGGGGTCTCTTGCTTGG 494
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GGAGCTGGTTCAGCTACTGCTGCAGTTTTTGGGCTAATCATGCCGGGGTCTCTTGCTTGG 420
Query 495 CGTGCGCGGAATGTGTTGCTTGGTTCAGTTCTTGGAGCCACAGTGTGCTTCCCTCTTGGG 554
||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 421 CGTGCTCGGAATGTGTTGCTTGGTTCAGTTCTTGGAGCTACAGTCTGCTTCCCTCTTGGT 480
Query 555 TGGGTACAACTGAAGCTCATGAAGAAAGCAAACGAAGGCAATAACGTTGACACAGGCCAC 614
||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 481 TGGTTACAACTGAAGCTCATGAAGAAAGCAAACGAAGGAAATAACG---ACACAAGCCAC 537
Query 615 CACGGTGAGGTCACGAGTGGTGTTGGTGCAGCCATTGAGAGACTCGAACAACAGTTGAGA 674
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 CACGGCGAGGTCACAAGTGGTGTTGGCGCAGCCATTGAGAGACTCGAACAACAGTTGAGA 597
Query 675 AAATAA 680
||||||
Sbjct 598 AAATAA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5